Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 H 1.09001 * 109.47215 * 305.54754 * 3 2 1 5 5 C 1.50698 * 109.47065 * 185.54420 * 3 2 1 6 6 H 1.07994 * 119.99871 * 240.00212 * 5 3 2 7 7 C 1.37879 * 119.99905 * 60.00479 * 5 3 2 8 8 N 1.31510 * 119.99728 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47182 * 59.99722 * 9 7 5 11 11 H 1.48502 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46904 * 299.99977 * 9 7 5 13 13 N 1.46897 * 109.46909 * 65.54510 * 3 2 1 14 14 C 1.46902 * 111.00250 * 206.70418 * 13 3 2 15 15 C 1.52997 * 109.47387 * 185.83127 * 14 13 3 16 16 H 1.08999 * 109.47397 * 64.59434 * 15 14 13 17 17 C 1.53001 * 109.47288 * 184.59535 * 15 14 13 18 18 N 1.46904 * 109.47295 * 304.59722 * 15 14 13 19 19 C 1.46898 * 110.99846 * 293.33707 * 18 15 14 20 20 C 1.46894 * 111.00124 * 169.37999 * 18 15 14 21 21 C 1.52996 * 117.50357 * 248.74722 * 20 18 15 22 22 C 1.53008 * 117.49897 * 180.08554 * 20 18 15 23 23 H 1.08998 * 109.46862 * 298.93160 * 1 2 3 24 24 H 1.08997 * 109.47191 * 58.93063 * 1 2 3 25 25 H 1.08998 * 109.46945 * 178.93227 * 1 2 3 26 26 H 1.09003 * 109.46748 * 240.00650 * 2 1 3 27 27 H 1.09002 * 109.47289 * 120.00450 * 2 1 3 28 28 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00040 * 330.66103 * 13 3 2 30 30 H 1.09003 * 109.46989 * 65.83045 * 14 13 3 31 31 H 1.08995 * 109.46850 * 305.83171 * 14 13 3 32 32 H 1.08996 * 109.47039 * 299.99923 * 17 15 14 33 33 H 1.08997 * 109.46808 * 179.97438 * 17 15 14 34 34 H 1.09003 * 109.46669 * 60.00027 * 17 15 14 35 35 H 1.08997 * 109.47220 * 53.75876 * 19 18 15 36 36 H 1.09004 * 109.47203 * 173.76325 * 19 18 15 37 37 H 1.09004 * 109.47027 * 293.75725 * 19 18 15 38 38 H 1.09003 * 115.55066 * 34.42120 * 20 18 15 39 39 H 1.09010 * 117.49544 * 359.97438 * 21 20 18 40 40 H 1.08996 * 117.50642 * 145.02046 * 21 20 18 41 41 H 1.09002 * 117.49724 * 214.98166 * 22 20 18 42 42 H 1.08997 * 117.49401 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8361 5 6 3.5408 1.4447 -0.1373 6 1 4.1529 1.8868 0.6348 7 6 4.1322 0.8824 -1.2486 8 7 3.3866 0.3437 -2.1885 9 14 5.9924 0.8858 -1.4191 10 1 6.5952 0.1482 -0.2799 11 1 6.3739 0.2253 -2.6932 12 1 6.4868 2.2861 -1.4193 13 7 1.6627 2.0952 1.2607 14 6 1.5429 3.5489 1.0858 15 6 1.2930 4.2072 2.4440 16 1 2.1617 4.0584 3.0853 17 6 1.0544 5.7058 2.2483 18 7 0.1113 3.6012 3.0720 19 6 -1.1074 3.9173 2.3152 20 6 -0.0148 4.0230 4.4734 21 6 0.2164 2.9644 5.5535 22 6 -1.1991 3.4750 5.2723 23 1 -0.3633 0.4971 0.8994 24 1 -0.3633 0.5303 -0.8802 25 1 -0.3633 -1.0275 -0.0191 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8027 -0.0516 -2.9705 29 1 0.8088 1.7038 1.6291 30 1 0.7098 3.7670 0.4175 31 1 2.4651 3.9403 0.6565 32 1 1.9312 6.1555 1.7825 33 1 0.8759 6.1747 3.2160 34 1 0.1856 5.8546 1.6070 35 1 -0.9719 3.6315 1.2722 36 1 -1.9494 3.3677 2.7362 37 1 -1.3054 4.9875 2.3759 38 1 0.3096 5.0411 4.6889 39 1 0.4617 1.9547 5.2242 40 1 0.6926 3.2859 6.4797 41 1 -1.6534 4.1323 6.0137 42 1 -1.8847 2.8017 4.7579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = 9.849880 kcal Electronic energy + Delta-G solvation = -18264.957530 eV Core-core repulsion = 15665.996490 eV Total energy + Delta-G solvation = -2598.961041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05395 -37.96950 -36.16410 -34.06802 -32.59150 -30.86937 -28.65699 -27.03192 -26.08053 -24.24699 -23.06080 -22.16960 -21.31900 -20.22109 -18.35791 -17.71182 -16.73521 -16.62098 -15.83948 -15.68672 -15.31704 -14.91585 -14.66263 -14.18478 -13.92578 -13.69124 -13.58247 -13.13351 -13.01286 -12.87116 -12.72117 -12.58786 -12.49388 -12.29003 -12.09853 -11.91853 -11.85844 -11.49615 -11.33335 -11.12168 -10.98475 -10.94374 -10.39816 -9.09867 -8.80217 -8.03022 -6.15350 1.42284 1.44234 1.51900 2.46038 2.91348 2.99207 3.20945 3.66560 4.08414 4.14362 4.16978 4.28860 4.34676 4.40219 4.48136 4.51276 4.59150 4.68572 4.72455 4.73035 4.82728 4.85781 4.91498 4.93953 5.07190 5.12958 5.15493 5.23296 5.25026 5.33912 5.41150 5.41565 5.63127 5.78458 5.94799 6.20631 6.32813 6.42099 6.63785 7.00088 7.18022 7.54222 8.99554 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.006086 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.267728 B = 4599.689854 C = 4954.951844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.037 1.037 5 C -0.510 4.510 6 H 0.048 0.952 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.084 3.916 15 C 0.097 3.903 16 H 0.073 0.927 17 C -0.175 4.175 18 N -0.514 5.514 19 C 0.024 3.976 20 C -0.005 4.005 21 C -0.169 4.169 22 C -0.160 4.160 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.010 0.990 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 8.117 11.871 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.116 3.884 4 H -0.020 1.020 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.562 5.562 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.047 4.047 15 C -0.011 4.011 16 H 0.092 0.908 17 C -0.234 4.234 18 N -0.237 5.237 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.207 4.207 22 C -0.198 4.198 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.538 7.538 11.913 16.481 hybrid contribution 0.245 0.717 -1.140 1.369 sum -8.293 8.254 10.772 15.904 Atomic orbital electron populations 1.21716 0.96378 1.01029 1.00215 1.21578 0.94149 0.99174 1.00932 1.18912 0.93879 0.90572 0.85057 1.01986 1.21469 0.92945 1.36389 1.04052 0.93392 1.25691 1.02277 0.95385 0.95595 1.70002 1.36265 1.40023 1.09886 0.85654 0.80815 0.78203 0.77160 1.19930 1.20894 1.19970 1.60425 1.38619 1.02664 1.29250 1.21786 0.98137 0.89773 0.94990 1.21566 0.93126 0.91783 0.94667 0.90836 1.22344 1.02531 0.96166 1.02376 1.61827 1.02655 1.58379 1.00847 1.22384 0.92417 0.99634 0.97885 1.22477 1.05387 0.96660 0.86826 1.23066 0.99360 0.99120 0.99114 1.23085 0.91027 1.03495 1.02164 0.92707 0.94626 0.92394 0.91488 0.94797 0.93144 0.84506 0.97187 0.93279 0.91952 0.91198 0.92138 0.93044 0.90677 0.94304 0.88724 0.89867 0.87696 0.87012 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.74 71.98 0.70 -4.67 16 2 C -0.12 -5.90 5.35 30.60 0.16 -5.74 16 3 C 0.22 11.73 2.02 44.17 0.09 11.82 16 4 H -0.04 -2.18 7.83 -2.39 -0.02 -2.19 16 5 C -0.51 -29.35 8.62 25.60 0.22 -29.13 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.47 5.29 84.66 0.45 0.92 16 8 N -0.92 -54.33 11.29 21.45 0.24 -54.09 16 9 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.68 -29.95 6.24 -495.46 -3.09 -33.03 16 14 C 0.08 3.24 4.70 86.30 0.41 3.65 16 15 C 0.10 2.95 2.60 44.91 0.12 3.07 16 16 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 17 C -0.17 -4.22 8.47 71.98 0.61 -3.61 16 18 N -0.51 -13.94 4.06 -871.79 -3.54 -17.48 16 19 C 0.02 0.59 8.40 127.69 1.07 1.66 16 20 C 0.00 -0.11 5.02 44.92 0.23 0.11 16 21 C -0.17 -3.62 10.46 30.62 0.32 -3.30 16 22 C -0.16 -2.93 9.79 30.62 0.30 -2.63 16 23 H 0.05 1.96 6.49 -2.39 -0.02 1.95 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 3.73 5.94 -2.39 -0.01 3.71 16 27 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.34 13.83 5.84 -89.69 -0.52 13.30 16 30 H 0.01 0.39 6.66 -2.39 -0.02 0.38 16 31 H 0.05 2.12 7.97 -2.39 -0.02 2.11 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.43 6.66 -2.39 -0.02 1.42 16 34 H 0.06 1.42 6.46 -2.39 -0.02 1.40 16 35 H 0.05 1.43 6.33 -2.39 -0.02 1.41 16 36 H 0.07 1.62 6.99 -2.39 -0.02 1.61 16 37 H 0.04 0.83 6.60 -2.39 -0.02 0.82 16 38 H 0.10 1.95 6.63 -2.39 -0.02 1.94 16 39 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.79 7.29 -2.39 -0.02 1.77 16 Total: -1.00 -61.60 321.81 0.77 -60.83 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.45 Total: 24.38 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.67 Total: -27.86 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -6.38 Total: -104.60 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -61.60 0.77 -60.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.680 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds