Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47477 * 2 1 4 4 H 1.08996 * 109.46826 * 305.60922 * 3 2 1 5 5 C 1.50697 * 109.47145 * 185.61145 * 3 2 1 6 6 H 1.08007 * 119.99795 * 245.40605 * 5 3 2 7 7 C 1.37873 * 120.00201 * 65.40055 * 5 3 2 8 8 N 1.31511 * 120.00148 * 197.21624 * 7 5 3 9 9 Si 1.86801 * 119.99968 * 17.22752 * 7 5 3 10 10 H 1.48499 * 109.47406 * 86.79624 * 9 7 5 11 11 H 1.48501 * 109.46765 * 206.80026 * 9 7 5 12 12 H 1.48502 * 109.46795 * 326.79580 * 9 7 5 13 13 N 1.46898 * 109.46826 * 65.60978 * 3 2 1 14 14 C 1.46897 * 110.99834 * 251.62203 * 13 3 2 15 15 C 1.53004 * 109.47008 * 183.52070 * 14 13 3 16 16 H 1.09005 * 109.47012 * 294.99732 * 15 14 13 17 17 C 1.53004 * 109.47079 * 175.00250 * 15 14 13 18 18 N 1.46898 * 109.47212 * 54.99897 * 15 14 13 19 19 C 1.46899 * 111.00023 * 66.04879 * 18 15 14 20 20 C 1.46900 * 110.99931 * 190.00080 * 18 15 14 21 21 C 1.52998 * 117.49805 * 243.62311 * 20 18 15 22 22 C 1.52996 * 117.49850 * 175.00192 * 20 18 15 23 23 H 1.09007 * 109.46766 * 305.15955 * 1 2 3 24 24 H 1.08995 * 109.47337 * 185.15913 * 1 2 3 25 25 H 1.08998 * 109.46893 * 65.15420 * 1 2 3 26 26 H 1.09003 * 109.47041 * 120.00538 * 2 1 3 27 27 H 1.09007 * 109.47114 * 239.99935 * 2 1 3 28 28 H 0.97006 * 120.00534 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00564 * 15.57550 * 13 3 2 30 30 H 1.09004 * 109.47363 * 303.51993 * 14 13 3 31 31 H 1.08996 * 109.47169 * 63.51951 * 14 13 3 32 32 H 1.09005 * 109.46776 * 299.99627 * 17 15 14 33 33 H 1.08998 * 109.47489 * 59.99399 * 17 15 14 34 34 H 1.08997 * 109.47210 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46964 * 59.99700 * 19 18 15 36 36 H 1.08999 * 109.47125 * 180.02562 * 19 18 15 37 37 H 1.09001 * 109.46934 * 300.00166 * 19 18 15 38 38 H 1.08997 * 115.55195 * 29.32833 * 20 18 15 39 39 H 1.09001 * 117.50263 * 359.97438 * 21 20 18 40 40 H 1.09002 * 117.50048 * 145.02253 * 21 20 18 41 41 H 1.09003 * 117.50164 * 214.97839 * 22 20 18 42 42 H 1.08999 * 117.49945 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9844 -0.8355 5 6 3.5406 1.4446 -0.1389 6 1 4.1573 1.8068 0.6704 7 6 4.1262 0.9843 -1.2991 8 7 5.4020 0.6653 -1.3100 9 14 3.1075 0.8138 -2.8556 10 1 3.0997 2.1066 -3.5862 11 1 3.6972 -0.2398 -3.7201 12 1 1.7159 0.4390 -2.4977 13 7 1.6641 2.0947 1.2614 14 6 0.6039 3.0881 1.0447 15 6 0.3012 3.8064 2.3613 16 1 -0.1119 3.0952 3.0766 17 6 -0.7125 4.9248 2.1108 18 7 1.5405 4.3808 2.9019 19 6 2.0499 5.4482 2.0306 20 6 1.3398 4.8707 4.2721 21 6 1.5045 6.3720 4.5169 22 6 2.5665 5.3934 5.0223 23 1 -0.3633 0.5918 0.8402 24 1 -0.3634 -1.0234 0.0924 25 1 -0.3633 0.4318 -0.9325 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 5.8142 0.3418 -2.1264 29 1 1.3857 1.4136 1.9518 30 1 0.9330 3.8147 0.3017 31 1 -0.2963 2.5870 0.6889 32 1 -0.2994 5.6360 1.3955 33 1 -1.6320 4.4986 1.7097 34 1 -0.9277 5.4368 3.0487 35 1 1.3039 6.2389 1.9506 36 1 2.9680 5.8556 2.4539 37 1 2.2559 5.0416 1.0404 38 1 0.5807 4.3462 4.8525 39 1 1.7623 6.9961 3.6613 40 1 0.8537 6.8355 5.2583 41 1 2.6143 5.2131 6.0963 42 1 3.5226 5.3734 4.4992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = 39.167950 kcal Electronic energy + Delta-G solvation = -18337.155181 eV Core-core repulsion = 15739.465468 eV Total energy + Delta-G solvation = -2597.689714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17868 -36.75309 -34.76566 -32.11053 -30.97861 -29.58255 -27.42557 -26.28459 -24.39900 -22.31911 -22.20783 -20.89100 -19.77275 -19.07669 -16.79275 -16.61376 -15.27748 -14.89219 -14.79236 -14.24793 -13.92419 -13.46824 -13.32478 -12.76603 -12.52779 -12.31651 -12.07820 -11.87157 -11.73899 -11.53853 -11.47946 -11.37204 -11.10543 -10.79293 -10.64195 -10.51325 -10.41277 -10.28240 -10.04854 -9.84200 -9.39514 -9.21923 -8.27347 -7.68639 -7.06921 -5.96700 -3.85532 3.33079 3.41994 3.44004 3.85547 4.21413 4.51651 4.87965 5.00638 5.08409 5.15045 5.28546 5.30060 5.32527 5.59928 5.64037 5.69511 5.74727 5.79201 5.87756 5.90350 5.93055 5.99381 6.05142 6.07663 6.12350 6.19647 6.25877 6.40487 6.46370 6.54970 6.66139 6.84383 6.96790 7.28085 7.42212 7.47209 7.90173 8.12379 8.53844 8.87242 9.25789 9.72010 11.17089 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.006569 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.714637 B = 4261.149522 C = 4726.253316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.193 3.807 4 H 0.015 0.985 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.258 1.258 13 N -0.652 5.652 14 C 0.067 3.933 15 C 0.086 3.914 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.473 5.473 19 C 0.022 3.978 20 C 0.028 3.972 21 C -0.227 4.227 22 C -0.172 4.172 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.324 0.676 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 7.914 8.235 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.084 3.916 4 H 0.033 0.967 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.183 1.183 13 N -0.281 5.281 14 C -0.063 4.063 15 C -0.023 4.023 16 H 0.093 0.907 17 C -0.243 4.243 18 N -0.193 5.193 19 C -0.125 4.125 20 C -0.082 4.082 21 C -0.266 4.266 22 C -0.210 4.210 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.105 7.904 8.070 15.840 hybrid contribution -1.799 -0.033 -1.181 2.153 sum -12.904 7.871 6.889 16.611 Atomic orbital electron populations 1.21940 0.98725 1.00061 1.00468 1.22552 0.92478 1.01703 1.01938 1.19555 0.96622 0.88188 0.87237 0.96738 1.21042 0.89310 1.40526 1.02022 0.90041 1.24908 0.94667 0.94983 0.98580 1.69995 1.11919 1.43971 1.27559 0.87321 0.81860 0.77761 0.84698 1.20812 1.21696 1.18289 1.60450 1.38677 1.18161 1.10843 1.22073 0.93334 0.95878 0.95022 1.21786 0.87990 0.95242 0.97249 0.90693 1.22472 0.99965 1.00081 1.01811 1.61882 1.27426 1.30719 0.99233 1.22496 0.98615 0.92687 0.98726 1.22649 0.99826 0.93134 0.92542 1.23543 1.04403 0.94679 1.03972 1.23014 0.94958 1.03256 0.99752 0.93564 0.94044 0.93869 0.92323 0.92229 0.92986 0.85842 0.91635 0.96205 0.92138 0.92474 0.92705 0.95775 0.91939 0.90110 0.87243 0.88458 0.89621 0.89038 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.45 37.16 0.35 -2.33 16 2 C -0.15 -3.14 4.56 -26.73 -0.12 -3.27 16 3 C 0.19 4.47 1.73 -68.87 -0.12 4.36 16 4 H 0.01 0.36 6.15 -51.93 -0.32 0.04 16 5 C -0.49 -13.89 9.25 -34.44 -0.32 -14.21 16 6 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 7 C 0.07 2.01 5.30 -17.82 -0.09 1.92 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.86 21.36 25.86 -169.99 -4.40 16.96 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.05 5.65 56.52 0.32 -5.73 16 13 N -0.65 -13.07 5.76 -107.96 -0.62 -13.70 16 14 C 0.07 1.12 4.25 -3.82 -0.02 1.11 16 15 C 0.09 1.20 2.55 -67.71 -0.17 1.03 16 16 H 0.07 1.01 7.96 -51.93 -0.41 0.59 16 17 C -0.18 -2.14 8.49 37.16 0.32 -1.82 16 18 N -0.47 -7.04 4.64 -226.91 -1.05 -8.09 16 19 C 0.02 0.33 7.41 60.06 0.45 0.77 16 20 C 0.03 0.36 5.20 -67.72 -0.35 0.01 16 21 C -0.23 -2.51 9.50 -26.73 -0.25 -2.76 16 22 C -0.17 -2.07 9.98 -26.74 -0.27 -2.33 16 23 H 0.05 0.73 5.97 -51.92 -0.31 0.42 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.24 8.06 -51.93 -0.42 0.83 16 27 H 0.06 1.37 5.17 -51.92 -0.27 1.10 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.32 6.19 7.71 -39.29 -0.30 5.88 16 30 H 0.07 1.17 6.72 -51.93 -0.35 0.82 16 31 H 0.02 0.32 6.61 -51.93 -0.34 -0.02 16 32 H 0.06 0.72 6.33 -51.93 -0.33 0.39 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.59 7.52 -51.93 -0.39 0.20 16 35 H 0.02 0.31 5.31 -51.93 -0.28 0.03 16 36 H 0.06 0.90 6.63 -51.93 -0.34 0.56 16 37 H 0.08 1.37 6.58 -51.93 -0.34 1.03 16 38 H 0.11 1.27 7.93 -51.93 -0.41 0.86 16 39 H 0.10 1.11 5.89 -51.93 -0.31 0.80 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.31 7.57 -51.93 -0.39 0.92 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -29.80 312.94 -8.46 -38.26 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.27 Total: 6.30 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -0.61 Total: -17.53 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.90 Total: -48.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.40 Total: 16.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.80 -8.46 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.423 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds