Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47477 * 2 1 4 4 H 1.08996 * 109.46826 * 305.60922 * 3 2 1 5 5 C 1.50697 * 109.47145 * 185.61145 * 3 2 1 6 6 H 1.08007 * 119.99795 * 245.40605 * 5 3 2 7 7 C 1.37873 * 120.00201 * 65.40055 * 5 3 2 8 8 N 1.31511 * 120.00148 * 197.21624 * 7 5 3 9 9 Si 1.86801 * 119.99968 * 17.22752 * 7 5 3 10 10 H 1.48499 * 109.47406 * 86.79624 * 9 7 5 11 11 H 1.48501 * 109.46765 * 206.80026 * 9 7 5 12 12 H 1.48502 * 109.46795 * 326.79580 * 9 7 5 13 13 N 1.46898 * 109.46826 * 65.60978 * 3 2 1 14 14 C 1.46897 * 110.99834 * 251.62203 * 13 3 2 15 15 C 1.53004 * 109.47008 * 183.52070 * 14 13 3 16 16 H 1.09005 * 109.47012 * 294.99732 * 15 14 13 17 17 C 1.53004 * 109.47079 * 175.00250 * 15 14 13 18 18 N 1.46898 * 109.47212 * 54.99897 * 15 14 13 19 19 C 1.46899 * 111.00023 * 66.04879 * 18 15 14 20 20 C 1.46900 * 110.99931 * 190.00080 * 18 15 14 21 21 C 1.52998 * 117.49805 * 243.62311 * 20 18 15 22 22 C 1.52996 * 117.49850 * 175.00192 * 20 18 15 23 23 H 1.09007 * 109.46766 * 305.15955 * 1 2 3 24 24 H 1.08995 * 109.47337 * 185.15913 * 1 2 3 25 25 H 1.08998 * 109.46893 * 65.15420 * 1 2 3 26 26 H 1.09003 * 109.47041 * 120.00538 * 2 1 3 27 27 H 1.09007 * 109.47114 * 239.99935 * 2 1 3 28 28 H 0.97006 * 120.00534 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00564 * 15.57550 * 13 3 2 30 30 H 1.09004 * 109.47363 * 303.51993 * 14 13 3 31 31 H 1.08996 * 109.47169 * 63.51951 * 14 13 3 32 32 H 1.09005 * 109.46776 * 299.99627 * 17 15 14 33 33 H 1.08998 * 109.47489 * 59.99399 * 17 15 14 34 34 H 1.08997 * 109.47210 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46964 * 59.99700 * 19 18 15 36 36 H 1.08999 * 109.47125 * 180.02562 * 19 18 15 37 37 H 1.09001 * 109.46934 * 300.00166 * 19 18 15 38 38 H 1.08997 * 115.55195 * 29.32833 * 20 18 15 39 39 H 1.09001 * 117.50263 * 359.97438 * 21 20 18 40 40 H 1.09002 * 117.50048 * 145.02253 * 21 20 18 41 41 H 1.09003 * 117.50164 * 214.97839 * 22 20 18 42 42 H 1.08999 * 117.49945 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9844 -0.8355 5 6 3.5406 1.4446 -0.1389 6 1 4.1573 1.8068 0.6704 7 6 4.1262 0.9843 -1.2991 8 7 5.4020 0.6653 -1.3100 9 14 3.1075 0.8138 -2.8556 10 1 3.0997 2.1066 -3.5862 11 1 3.6972 -0.2398 -3.7201 12 1 1.7159 0.4390 -2.4977 13 7 1.6641 2.0947 1.2614 14 6 0.6039 3.0881 1.0447 15 6 0.3012 3.8064 2.3613 16 1 -0.1119 3.0952 3.0766 17 6 -0.7125 4.9248 2.1108 18 7 1.5405 4.3808 2.9019 19 6 2.0499 5.4482 2.0306 20 6 1.3398 4.8707 4.2721 21 6 1.5045 6.3720 4.5169 22 6 2.5665 5.3934 5.0223 23 1 -0.3633 0.5918 0.8402 24 1 -0.3634 -1.0234 0.0924 25 1 -0.3633 0.4318 -0.9325 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 5.8142 0.3418 -2.1264 29 1 1.3857 1.4136 1.9518 30 1 0.9330 3.8147 0.3017 31 1 -0.2963 2.5870 0.6889 32 1 -0.2994 5.6360 1.3955 33 1 -1.6320 4.4986 1.7097 34 1 -0.9277 5.4368 3.0487 35 1 1.3039 6.2389 1.9506 36 1 2.9680 5.8556 2.4539 37 1 2.2559 5.0416 1.0404 38 1 0.5807 4.3462 4.8525 39 1 1.7623 6.9961 3.6613 40 1 0.8537 6.8355 5.2583 41 1 2.6143 5.2131 6.0963 42 1 3.5226 5.3734 4.4992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = 17.968068 kcal Electronic energy + Delta-G solvation = -18338.074477 eV Core-core repulsion = 15739.465468 eV Total energy + Delta-G solvation = -2598.609010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26955 -38.30070 -35.99703 -34.21422 -32.43445 -30.75924 -29.19828 -27.39521 -25.92850 -23.98836 -23.12664 -22.07432 -21.49722 -20.23531 -18.72138 -17.88370 -16.73673 -16.50347 -15.91548 -15.76304 -15.43414 -14.80507 -14.62104 -14.50915 -13.83186 -13.75700 -13.41181 -13.31854 -12.98696 -12.87531 -12.76459 -12.56471 -12.52196 -12.25442 -12.19118 -12.06331 -11.65034 -11.51237 -11.48023 -11.31208 -11.25530 -11.01680 -10.46881 -8.75841 -8.67212 -8.22059 -6.15437 1.34227 1.37169 1.46132 2.39411 2.85661 3.10180 3.21493 3.62172 4.01212 4.09729 4.13692 4.20466 4.29443 4.34087 4.39931 4.46432 4.52031 4.55547 4.66610 4.71924 4.80114 4.83588 4.88566 4.90932 4.99507 5.11003 5.11862 5.17286 5.19987 5.24160 5.29401 5.32505 5.36097 5.57045 5.82037 6.18190 6.31924 6.43200 6.86297 6.91452 7.02074 7.46944 8.95938 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.006569 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.714637 B = 4261.149522 C = 4726.253316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.200 3.800 4 H 0.013 0.987 5 C -0.496 4.496 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.948 5.948 9 Si 0.926 3.074 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.230 1.230 13 N -0.665 5.665 14 C 0.070 3.930 15 C 0.091 3.909 16 H 0.085 0.915 17 C -0.174 4.174 18 N -0.500 5.500 19 C 0.031 3.969 20 C 0.019 3.981 21 C -0.207 4.207 22 C -0.182 4.182 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 8.293 8.587 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.185 4.185 3 C 0.091 3.909 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.046 0.954 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.750 3.250 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.153 1.153 13 N -0.295 5.295 14 C -0.060 4.060 15 C -0.018 4.018 16 H 0.103 0.897 17 C -0.234 4.234 18 N -0.221 5.221 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.246 4.246 22 C -0.220 4.220 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.588 8.295 8.444 18.786 hybrid contribution -0.632 -0.114 -1.168 1.333 sum -15.220 8.181 7.276 18.748 Atomic orbital electron populations 1.21830 0.94942 1.02010 1.01393 1.22392 0.95783 0.99465 1.00826 1.19307 0.93080 0.89919 0.88624 0.96964 1.21330 0.92078 1.39517 1.00505 0.95388 1.25751 0.95813 0.94807 1.02177 1.70153 1.14253 1.45963 1.28549 0.86197 0.81459 0.77660 0.79681 1.20563 1.21662 1.15250 1.60231 1.41079 1.18594 1.09611 1.22105 0.92608 0.94756 0.96528 1.21732 0.88228 0.96010 0.95784 0.89660 1.22364 0.99549 0.99043 1.02396 1.61797 1.28546 1.31318 1.00414 1.22334 0.99084 0.93145 0.97101 1.22726 1.00437 0.94541 0.91338 1.23535 1.03506 0.93627 1.03961 1.23043 0.94123 1.04348 1.00457 0.91915 0.91772 0.93511 0.92960 0.94004 0.92976 0.85105 0.93384 0.94453 0.92774 0.91093 0.91393 0.93702 0.92589 0.93239 0.85752 0.88929 0.87461 0.87420 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.45 71.98 0.68 -3.80 16 2 C -0.15 -5.98 4.56 30.59 0.14 -5.84 16 3 C 0.20 9.25 1.73 44.17 0.08 9.33 16 4 H 0.01 0.59 6.15 -2.39 -0.01 0.57 16 5 C -0.50 -29.13 9.25 25.60 0.24 -28.89 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.65 5.30 84.65 0.45 1.10 16 8 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 9 Si 0.93 44.54 25.86 68.60 1.77 46.32 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.23 -9.90 5.65 99.48 0.56 -9.34 16 13 N -0.66 -26.47 5.76 -495.46 -2.85 -29.32 16 14 C 0.07 2.22 4.25 86.31 0.37 2.59 16 15 C 0.09 2.34 2.55 44.92 0.11 2.45 16 16 H 0.09 2.03 7.96 -2.38 -0.02 2.01 16 17 C -0.17 -3.51 8.49 71.98 0.61 -2.89 16 18 N -0.50 -14.47 4.64 -871.80 -4.05 -18.52 16 19 C 0.03 0.92 7.41 127.69 0.95 1.87 16 20 C 0.02 0.44 5.20 44.91 0.23 0.68 16 21 C -0.21 -4.10 9.50 30.59 0.29 -3.81 16 22 C -0.18 -4.18 9.98 30.59 0.31 -3.88 16 23 H 0.06 1.73 5.97 -2.38 -0.01 1.72 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 27 H 0.04 1.85 5.17 -2.38 -0.01 1.83 16 28 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.33 12.30 7.71 -89.69 -0.69 11.61 16 30 H 0.05 1.69 6.72 -2.39 -0.02 1.68 16 31 H 0.04 1.07 6.61 -2.39 -0.02 1.05 16 32 H 0.05 1.16 6.33 -2.38 -0.02 1.14 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.21 7.52 -2.39 -0.02 1.19 16 35 H 0.04 1.10 5.31 -2.39 -0.01 1.09 16 36 H 0.06 1.67 6.63 -2.39 -0.02 1.65 16 37 H 0.05 1.74 6.58 -2.39 -0.02 1.73 16 38 H 0.12 2.52 7.93 -2.39 -0.02 2.50 16 39 H 0.09 1.93 5.89 -2.39 -0.01 1.92 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 2.07 7.57 -2.39 -0.02 2.05 16 Total: -1.00 -67.30 312.94 -0.23 -67.53 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.15 Total: 25.78 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.45 Total: -31.10 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -6.60 Total: -108.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.77 Total: 46.32 kcal Total: -67.30 -0.23 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.495 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds