Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 H 1.08996 * 109.47508 * 55.00183 * 3 2 1 5 5 C 1.53009 * 109.47055 * 175.00077 * 3 2 1 6 6 N 1.46905 * 109.47041 * 294.99961 * 3 2 1 7 7 C 1.46953 * 110.99893 * 279.33506 * 6 3 2 8 8 C 1.53049 * 109.36512 * 176.81400 * 7 6 3 9 9 H 1.09007 * 109.50613 * 298.42417 * 8 7 6 10 10 C 1.50699 * 109.49319 * 178.36969 * 8 7 6 11 11 H 1.08004 * 119.99814 * 354.89935 * 10 8 7 12 12 C 1.37875 * 120.00250 * 174.89865 * 10 8 7 13 13 N 1.31513 * 120.00416 * 160.99646 * 12 10 8 14 14 Si 1.86802 * 120.00087 * 340.99122 * 12 10 8 15 15 H 1.48499 * 109.47519 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.47131 * 59.99689 * 14 12 10 17 17 H 1.48503 * 109.47220 * 300.00284 * 14 12 10 18 18 N 1.46955 * 109.36842 * 58.39987 * 8 7 6 19 19 C 1.46958 * 110.87779 * 300.68528 * 18 8 7 20 20 C 1.46961 * 110.99837 * 155.54033 * 6 3 2 21 21 C 1.52994 * 109.49380 * 63.21833 * 20 6 3 22 22 C 1.53006 * 109.50069 * 303.16351 * 20 6 3 23 23 H 1.09000 * 109.47224 * 59.99946 * 1 2 3 24 24 H 1.09002 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47165 * 299.99932 * 1 2 3 26 26 H 1.09001 * 109.47165 * 240.00068 * 2 1 3 27 27 H 1.09000 * 109.47224 * 120.00054 * 2 1 3 28 28 H 1.08997 * 109.47039 * 181.76059 * 5 3 2 29 29 H 1.08997 * 109.46672 * 301.76233 * 5 3 2 30 30 H 1.09002 * 109.46906 * 61.76045 * 5 3 2 31 31 H 1.08997 * 109.49208 * 56.84219 * 7 6 3 32 32 H 1.09000 * 109.49051 * 296.78072 * 7 6 3 33 33 H 0.97006 * 119.99621 * 354.91044 * 13 12 10 34 34 H 1.00896 * 111.00792 * 176.81733 * 18 8 7 35 35 H 1.09005 * 109.48635 * 179.28336 * 19 18 8 36 36 H 1.09002 * 109.48903 * 299.32292 * 19 18 8 37 37 H 1.09003 * 109.47144 * 163.87417 * 21 20 6 38 38 H 1.09004 * 109.47398 * 283.88083 * 21 20 6 39 39 H 1.09004 * 109.46890 * 43.87495 * 21 20 6 40 40 H 1.08999 * 109.47190 * 308.54146 * 22 20 6 41 41 H 1.08997 * 109.47265 * 68.54813 * 22 20 6 42 42 H 1.09008 * 109.46506 * 188.54560 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6514 2.0992 -1.2553 7 6 2.5693 1.7383 -2.3446 8 6 2.0856 2.3772 -3.6485 9 1 1.0956 1.9941 -3.8962 10 6 3.0469 2.0419 -4.7596 11 1 3.9579 1.5044 -4.5417 12 6 2.7634 2.4214 -6.0545 13 7 3.7255 2.4761 -6.9494 14 14 1.0125 2.8578 -6.5378 15 1 0.9736 3.2290 -7.9751 16 1 0.5434 4.0032 -5.7173 17 1 0.1285 1.6875 -6.3052 18 7 2.0191 3.8357 -3.4812 19 6 1.1012 4.1966 -2.3918 20 6 1.5850 3.5578 -1.0879 21 6 2.9746 4.0956 -0.7408 22 6 0.6092 3.8985 0.0403 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9256 2.4723 0.1572 29 1 3.8545 0.9293 1.0417 30 1 4.0008 0.9323 -0.7322 31 1 2.5918 0.6544 -2.4572 32 1 3.5705 2.1008 -2.1116 33 1 4.6453 2.3216 -6.6826 34 1 1.7521 4.2868 -4.3433 35 1 1.0788 5.2806 -2.2793 36 1 0.0998 3.8345 -2.6250 37 1 2.9959 5.1743 -0.8962 38 1 3.1998 3.8741 0.3025 39 1 3.7181 3.6214 -1.3815 40 1 -0.3388 3.3893 -0.1331 41 1 1.0274 3.5735 0.9929 42 1 0.4440 4.9757 0.0646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220413761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = 11.248866 kcal Electronic energy + Delta-G solvation = -19380.265789 eV Core-core repulsion = 16781.365413 eV Total energy + Delta-G solvation = -2598.900376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90419 -35.62113 -33.86102 -31.89491 -31.43119 -29.13474 -27.67185 -27.07231 -24.55729 -23.51307 -23.04207 -20.44116 -19.83991 -17.54009 -17.38894 -15.98139 -15.27582 -14.65716 -14.13749 -14.11359 -13.59948 -13.50844 -13.20141 -13.02947 -12.82164 -12.58040 -12.41000 -11.84211 -11.59441 -11.38926 -11.29953 -11.14339 -10.96638 -10.76591 -10.70474 -10.54741 -10.31578 -10.14899 -9.99710 -9.77467 -9.50777 -8.99327 -8.31992 -7.69280 -7.21356 -6.45851 -4.08866 3.29761 3.41545 3.57561 4.36856 4.45485 5.02537 5.04016 5.17051 5.33315 5.39231 5.47656 5.54911 5.65429 5.73465 5.75911 5.87404 5.90283 5.92951 6.05798 6.10117 6.14843 6.19426 6.21994 6.25011 6.28976 6.32967 6.41030 6.48013 6.51530 6.63122 6.64849 6.78320 6.87500 7.15993 7.66027 7.73608 7.94152 8.35609 8.45725 8.54393 8.89588 9.58741 10.90760 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.008684 C = 0.008270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.995362 B = 3223.492804 C = 3385.120602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.075 3.925 4 H 0.076 0.924 5 C -0.202 4.202 6 N -0.524 5.524 7 C 0.074 3.926 8 C 0.193 3.807 9 H -0.004 1.004 10 C -0.585 4.585 11 H 0.058 0.942 12 C 0.036 3.964 13 N -0.899 5.899 14 Si 1.045 2.955 15 H -0.284 1.284 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.688 5.688 19 C 0.065 3.935 20 C 0.112 3.888 21 C -0.167 4.167 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.270 0.730 34 H 0.334 0.666 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 0.409 14.392 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.034 4.034 4 H 0.094 0.906 5 C -0.260 4.260 6 N -0.248 5.248 7 C -0.053 4.053 8 C 0.085 3.915 9 H 0.014 0.986 10 C -0.625 4.625 11 H 0.076 0.924 12 C -0.170 4.170 13 N -0.533 5.533 14 Si 0.874 3.126 15 H -0.210 1.210 16 H -0.212 1.212 17 H -0.210 1.210 18 N -0.323 5.323 19 C -0.066 4.066 20 C 0.022 3.978 21 C -0.226 4.226 22 C -0.196 4.196 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.400 0.679 13.344 14.815 hybrid contribution 1.012 -0.316 1.131 1.550 sum -5.388 0.363 14.475 15.450 Atomic orbital electron populations 1.21630 0.95698 1.00306 1.02149 1.21499 0.96403 0.95836 1.01109 1.21764 0.93169 0.95265 0.93171 0.90551 1.22930 0.98047 1.03349 1.01649 1.62590 1.50942 1.06494 1.04758 1.22217 0.94018 0.99002 0.90071 1.19378 0.95424 0.83777 0.92896 0.98625 1.21901 1.07959 1.40143 0.92457 0.92401 1.25695 1.04762 0.93522 0.93064 1.70814 1.01306 1.43763 1.37399 0.83966 0.75778 0.76630 0.76182 1.20962 1.21240 1.21046 1.61259 1.50780 1.12047 1.08251 1.21944 0.94446 0.97878 0.92291 1.20987 0.94215 0.87882 0.94760 1.22584 0.98887 1.01364 0.99726 1.21920 0.99567 1.00795 0.97308 0.91330 0.93968 0.93811 0.91938 0.92782 0.90921 0.93377 0.91861 0.91819 0.93848 0.92036 0.84555 0.92256 0.96016 0.93041 0.93539 0.90711 0.92081 0.92885 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.80 37.16 0.36 -1.47 16 2 C -0.11 -1.51 5.50 -26.73 -0.15 -1.66 16 3 C 0.07 1.09 1.91 -67.71 -0.13 0.96 16 4 H 0.08 1.04 5.46 -51.93 -0.28 0.76 16 5 C -0.20 -2.89 7.80 37.16 0.29 -2.60 16 6 N -0.52 -9.08 3.83 -210.95 -0.81 -9.89 16 7 C 0.07 1.54 3.25 -3.77 -0.01 1.53 16 8 C 0.19 4.62 2.07 -68.81 -0.14 4.48 16 9 H 0.00 -0.09 6.80 -51.92 -0.35 -0.45 16 10 C -0.59 -16.34 9.04 -34.44 -0.31 -16.65 16 11 H 0.06 1.74 7.99 -52.48 -0.42 1.32 16 12 C 0.04 1.03 5.32 -17.82 -0.09 0.93 16 13 N -0.90 -27.30 13.70 55.43 0.76 -26.54 16 14 Si 1.05 25.13 26.49 -169.99 -4.50 20.63 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.32 5.90 56.52 0.33 -5.99 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 N -0.69 -15.41 6.14 -107.81 -0.66 -16.08 16 19 C 0.06 1.21 5.36 -3.77 -0.02 1.19 16 20 C 0.11 1.84 0.68 -131.54 -0.09 1.75 16 21 C -0.17 -2.70 6.48 37.15 0.24 -2.46 16 22 C -0.14 -1.84 7.99 37.16 0.30 -1.54 16 23 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.95 7.03 -51.93 -0.36 0.59 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.06 4.11 -51.93 -0.21 0.85 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 31 H 0.06 1.35 6.98 -51.93 -0.36 0.99 16 32 H 0.04 0.94 4.50 -51.93 -0.23 0.71 16 33 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 34 H 0.33 7.80 5.67 -39.29 -0.22 7.57 16 35 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.05 0.66 6.05 -51.93 -0.31 0.35 16 39 H 0.07 1.41 5.24 -51.93 -0.27 1.14 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.65 6.21 -51.93 -0.32 0.32 16 42 H 0.05 0.67 8.13 -51.92 -0.42 0.25 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -28.59 297.46 -7.60 -36.19 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.11 Total: 6.76 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 0.24 Total: -15.55 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.71 Total: -52.51 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.50 Total: 20.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.59 -7.60 -36.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220413761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.439 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds