Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 H 1.08996 * 109.47508 * 55.00183 * 3 2 1 5 5 C 1.53009 * 109.47055 * 175.00077 * 3 2 1 6 6 N 1.46905 * 109.47041 * 294.99961 * 3 2 1 7 7 C 1.46953 * 110.99893 * 279.33506 * 6 3 2 8 8 C 1.53049 * 109.36512 * 176.81400 * 7 6 3 9 9 H 1.09007 * 109.50613 * 298.42417 * 8 7 6 10 10 C 1.50699 * 109.49319 * 178.36969 * 8 7 6 11 11 H 1.08004 * 119.99814 * 354.89935 * 10 8 7 12 12 C 1.37875 * 120.00250 * 174.89865 * 10 8 7 13 13 N 1.31513 * 120.00416 * 160.99646 * 12 10 8 14 14 Si 1.86802 * 120.00087 * 340.99122 * 12 10 8 15 15 H 1.48499 * 109.47519 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.47131 * 59.99689 * 14 12 10 17 17 H 1.48503 * 109.47220 * 300.00284 * 14 12 10 18 18 N 1.46955 * 109.36842 * 58.39987 * 8 7 6 19 19 C 1.46958 * 110.87779 * 300.68528 * 18 8 7 20 20 C 1.46961 * 110.99837 * 155.54033 * 6 3 2 21 21 C 1.52994 * 109.49380 * 63.21833 * 20 6 3 22 22 C 1.53006 * 109.50069 * 303.16351 * 20 6 3 23 23 H 1.09000 * 109.47224 * 59.99946 * 1 2 3 24 24 H 1.09002 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47165 * 299.99932 * 1 2 3 26 26 H 1.09001 * 109.47165 * 240.00068 * 2 1 3 27 27 H 1.09000 * 109.47224 * 120.00054 * 2 1 3 28 28 H 1.08997 * 109.47039 * 181.76059 * 5 3 2 29 29 H 1.08997 * 109.46672 * 301.76233 * 5 3 2 30 30 H 1.09002 * 109.46906 * 61.76045 * 5 3 2 31 31 H 1.08997 * 109.49208 * 56.84219 * 7 6 3 32 32 H 1.09000 * 109.49051 * 296.78072 * 7 6 3 33 33 H 0.97006 * 119.99621 * 354.91044 * 13 12 10 34 34 H 1.00896 * 111.00792 * 176.81733 * 18 8 7 35 35 H 1.09005 * 109.48635 * 179.28336 * 19 18 8 36 36 H 1.09002 * 109.48903 * 299.32292 * 19 18 8 37 37 H 1.09003 * 109.47144 * 163.87417 * 21 20 6 38 38 H 1.09004 * 109.47398 * 283.88083 * 21 20 6 39 39 H 1.09004 * 109.46890 * 43.87495 * 21 20 6 40 40 H 1.08999 * 109.47190 * 308.54146 * 22 20 6 41 41 H 1.08997 * 109.47265 * 68.54813 * 22 20 6 42 42 H 1.09008 * 109.46506 * 188.54560 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6514 2.0992 -1.2553 7 6 2.5693 1.7383 -2.3446 8 6 2.0856 2.3772 -3.6485 9 1 1.0956 1.9941 -3.8962 10 6 3.0469 2.0419 -4.7596 11 1 3.9579 1.5044 -4.5417 12 6 2.7634 2.4214 -6.0545 13 7 3.7255 2.4761 -6.9494 14 14 1.0125 2.8578 -6.5378 15 1 0.9736 3.2290 -7.9751 16 1 0.5434 4.0032 -5.7173 17 1 0.1285 1.6875 -6.3052 18 7 2.0191 3.8357 -3.4812 19 6 1.1012 4.1966 -2.3918 20 6 1.5850 3.5578 -1.0879 21 6 2.9746 4.0956 -0.7408 22 6 0.6092 3.8985 0.0403 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9256 2.4723 0.1572 29 1 3.8545 0.9293 1.0417 30 1 4.0008 0.9323 -0.7322 31 1 2.5918 0.6544 -2.4572 32 1 3.5705 2.1008 -2.1116 33 1 4.6453 2.3216 -6.6826 34 1 1.7521 4.2868 -4.3433 35 1 1.0788 5.2806 -2.2793 36 1 0.0998 3.8345 -2.6250 37 1 2.9959 5.1743 -0.8962 38 1 3.1998 3.8741 0.3025 39 1 3.7181 3.6214 -1.3815 40 1 -0.3388 3.3893 -0.1331 41 1 1.0274 3.5735 0.9929 42 1 0.4440 4.9757 0.0646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220413761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = -9.081348 kcal Electronic energy + Delta-G solvation = -19381.147373 eV Core-core repulsion = 16781.365413 eV Total energy + Delta-G solvation = -2599.781960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31023 -37.15223 -35.48375 -33.85137 -32.77925 -30.39853 -29.31384 -28.32709 -26.13095 -25.24189 -24.19675 -22.13014 -21.17944 -19.66426 -18.90145 -17.42921 -16.73818 -16.12543 -15.75768 -15.45075 -15.32821 -15.09466 -14.53995 -14.47745 -14.20235 -13.98573 -13.78165 -13.23778 -12.84505 -12.82873 -12.66155 -12.59354 -12.41829 -12.27017 -11.95850 -11.93243 -11.89858 -11.59573 -11.56091 -11.23617 -11.03006 -10.95830 -10.50607 -9.16822 -8.93691 -8.74920 -6.39360 1.36334 1.46561 1.66922 2.42645 2.96910 3.02940 3.68236 3.84781 3.94029 4.19246 4.24707 4.27586 4.38455 4.48712 4.55910 4.56254 4.63462 4.74565 4.79860 4.81866 4.83095 4.84231 4.94908 4.97626 5.05201 5.11756 5.15261 5.18569 5.22587 5.30172 5.35411 5.48647 5.57583 5.61710 5.87564 5.99638 6.28173 6.39892 6.47736 6.64533 6.77526 7.37133 8.59594 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.008684 C = 0.008270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.995362 B = 3223.492804 C = 3385.120602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.075 3.925 4 H 0.100 0.900 5 C -0.197 4.197 6 N -0.525 5.525 7 C 0.090 3.910 8 C 0.198 3.802 9 H -0.014 1.014 10 C -0.592 4.592 11 H 0.018 0.982 12 C -0.011 4.011 13 N -0.930 5.930 14 Si 1.089 2.911 15 H -0.284 1.284 16 H -0.254 1.254 17 H -0.274 1.274 18 N -0.697 5.697 19 C 0.060 3.940 20 C 0.106 3.894 21 C -0.160 4.160 22 C -0.129 4.129 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.254 0.746 34 H 0.326 0.674 35 H 0.082 0.918 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 1.374 17.202 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C -0.033 4.033 4 H 0.118 0.882 5 C -0.255 4.255 6 N -0.249 5.249 7 C -0.038 4.038 8 C 0.090 3.910 9 H 0.003 0.997 10 C -0.631 4.631 11 H 0.036 0.964 12 C -0.210 4.210 13 N -0.565 5.565 14 Si 0.911 3.089 15 H -0.210 1.210 16 H -0.180 1.180 17 H -0.200 1.200 18 N -0.331 5.331 19 C -0.069 4.069 20 C 0.016 3.984 21 C -0.218 4.218 22 C -0.187 4.187 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.605 1.644 16.197 18.414 hybrid contribution 1.775 -0.653 0.323 1.919 sum -6.830 0.991 16.520 17.903 Atomic orbital electron populations 1.21574 0.94926 1.00936 1.01824 1.21518 0.97044 0.95207 1.01060 1.21907 0.93355 0.95806 0.92218 0.88203 1.22865 0.97821 1.03155 1.01675 1.62551 1.49615 1.07590 1.05139 1.21830 0.93992 0.97648 0.90316 1.19178 0.93537 0.85159 0.93135 0.99694 1.22083 1.07174 1.39477 0.94384 0.96396 1.27076 1.07796 0.92964 0.93208 1.70940 1.00957 1.46528 1.38084 0.83416 0.71293 0.77888 0.76306 1.20965 1.17954 1.19957 1.61072 1.52591 1.10463 1.08992 1.22158 0.93435 0.99535 0.91799 1.21157 0.95294 0.86945 0.94963 1.22494 0.97708 1.01223 1.00365 1.21857 0.98453 1.02108 0.96293 0.93667 0.93002 0.91952 0.94404 0.90436 0.91162 0.90937 0.94525 0.93296 0.95260 0.93741 0.85426 0.89976 0.96131 0.92559 0.91200 0.94167 0.91997 0.91111 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.80 71.98 0.71 -2.46 16 2 C -0.11 -2.78 5.50 30.59 0.17 -2.62 16 3 C 0.08 1.99 1.91 44.92 0.09 2.08 16 4 H 0.10 2.25 5.46 -2.39 -0.01 2.24 16 5 C -0.20 -5.33 7.80 71.99 0.56 -4.76 16 6 N -0.53 -17.41 3.83 -821.30 -3.15 -20.55 16 7 C 0.09 3.83 3.25 86.31 0.28 4.11 16 8 C 0.20 9.65 2.07 44.17 0.09 9.74 16 9 H -0.01 -0.72 6.80 -2.38 -0.02 -0.74 16 10 C -0.59 -34.51 9.04 25.60 0.23 -34.28 16 11 H 0.02 1.14 7.99 -2.91 -0.02 1.12 16 12 C -0.01 -0.62 5.32 84.65 0.45 -0.17 16 13 N -0.93 -58.66 13.70 21.45 0.29 -58.37 16 14 Si 1.09 50.94 26.49 68.60 1.82 52.76 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.25 -10.55 5.90 99.48 0.59 -9.96 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 N -0.70 -30.82 6.14 -495.00 -3.04 -33.86 16 19 C 0.06 2.11 5.36 86.31 0.46 2.57 16 20 C 0.11 3.20 0.68 3.53 0.00 3.21 16 21 C -0.16 -4.79 6.48 71.98 0.47 -4.32 16 22 C -0.13 -2.85 7.99 71.98 0.58 -2.28 16 23 H 0.04 1.27 7.75 -2.39 -0.02 1.25 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.13 7.03 -2.39 -0.02 1.12 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.92 4.11 -2.39 -0.01 1.91 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.17 6.33 -2.39 -0.02 1.16 16 31 H 0.05 2.17 6.98 -2.39 -0.02 2.15 16 32 H 0.03 1.32 4.50 -2.39 -0.01 1.31 16 33 H 0.25 16.32 8.73 -92.70 -0.81 15.51 16 34 H 0.33 14.93 5.67 -89.70 -0.51 14.42 16 35 H 0.08 2.50 8.12 -2.38 -0.02 2.48 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 38 H 0.07 1.75 6.05 -2.38 -0.01 1.74 16 39 H 0.04 1.49 5.24 -2.39 -0.01 1.48 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.33 6.21 -2.39 -0.01 1.32 16 42 H 0.07 1.40 8.13 -2.38 -0.02 1.38 16 Total: -1.00 -64.69 297.46 0.34 -64.35 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.33 Total: 24.86 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.08 Total: -29.19 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.89 Total: -112.78 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.82 Total: 52.76 kcal Total: -64.69 0.34 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220413761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds