Wall clock time and date at job start Mon Mar 30 2020 03:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47286 * 2 1 4 4 H 1.09003 * 109.47155 * 55.00389 * 3 2 1 5 5 C 1.53008 * 109.47125 * 175.00025 * 3 2 1 6 6 N 1.46897 * 109.47236 * 295.00057 * 3 2 1 7 7 C 1.46956 * 111.00025 * 298.95577 * 6 3 2 8 8 C 1.53052 * 109.36017 * 176.81183 * 7 6 3 9 9 H 1.08994 * 109.49115 * 298.40535 * 8 7 6 10 10 C 1.50703 * 109.48624 * 178.36802 * 8 7 6 11 11 H 1.08006 * 120.00159 * 0.04100 * 10 8 7 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 N 1.46956 * 109.38639 * 58.39045 * 8 7 6 19 19 C 1.46954 * 110.87985 * 300.71391 * 18 8 7 20 20 C 1.53005 * 109.46976 * 299.31907 * 19 18 8 21 21 C 1.52996 * 109.49018 * 179.26595 * 19 18 8 22 22 C 1.46962 * 110.99871 * 175.15505 * 6 3 2 23 23 H 1.09004 * 109.46715 * 300.00109 * 1 2 3 24 24 H 1.08996 * 109.47111 * 59.99275 * 1 2 3 25 25 H 1.09000 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46715 * 239.99891 * 2 1 3 27 27 H 1.09006 * 109.47123 * 120.00584 * 2 1 3 28 28 H 1.09003 * 109.46806 * 60.00151 * 5 3 2 29 29 H 1.08993 * 109.47033 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.47207 * 300.00256 * 5 3 2 31 31 H 1.08997 * 109.49279 * 56.84371 * 7 6 3 32 32 H 1.08997 * 109.50621 * 296.78511 * 7 6 3 33 33 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 34 34 H 1.00906 * 110.99584 * 64.55512 * 18 8 7 35 35 H 1.08992 * 109.47323 * 179.90633 * 20 19 18 36 36 H 1.09002 * 109.46926 * 299.90308 * 20 19 18 37 37 H 1.08999 * 109.47081 * 59.89628 * 20 19 18 38 38 H 1.09006 * 109.47215 * 300.07991 * 21 19 18 39 39 H 1.08995 * 109.47673 * 60.08277 * 21 19 18 40 40 H 1.09001 * 109.47352 * 180.08549 * 21 19 18 41 41 H 1.09000 * 109.49001 * 303.15755 * 22 6 3 42 42 H 1.08995 * 109.48835 * 63.19723 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 1.6514 2.0992 -1.2552 7 6 2.2409 1.4128 -2.4132 8 6 1.7492 2.0774 -3.7013 9 1 0.6651 1.9860 -3.7667 10 6 2.3833 1.4013 -4.8895 11 1 3.0680 0.5792 -4.7413 12 6 2.0892 1.8318 -6.1659 13 7 1.2548 2.8323 -6.3464 14 14 2.8746 0.9933 -7.6387 15 1 4.1527 1.6723 -7.9716 16 1 1.9547 1.0718 -8.8018 17 1 3.1409 -0.4311 -7.3136 18 7 2.1217 3.4989 -3.6896 19 6 1.5327 4.1852 -2.5313 20 6 0.0073 4.0911 -2.6041 21 6 1.9549 5.6558 -2.5403 22 6 2.0243 3.5207 -1.2432 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9995 0.9052 -0.7161 29 1 3.9282 2.4718 0.1262 30 1 3.8533 0.9569 1.0570 31 1 1.9401 0.3652 -2.4068 32 1 3.3276 1.4796 -2.3615 33 1 0.8467 3.2674 -5.5816 34 1 3.1245 3.6101 -3.7040 35 1 -0.4295 4.5986 -1.7441 36 1 -0.3425 4.5644 -3.5216 37 1 -0.2927 3.0432 -2.5987 38 1 3.0417 5.7221 -2.4893 39 1 1.6047 6.1288 -3.4577 40 1 1.5191 6.1642 -1.6802 41 1 1.5657 4.0098 -0.3838 42 1 3.1085 3.6116 -1.1775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220414576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:25 Heat of formation + Delta-G solvation = -6.367601 kcal Electronic energy + Delta-G solvation = -19214.192444 eV Core-core repulsion = 16614.528161 eV Total energy + Delta-G solvation = -2599.664283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50046 -36.28090 -33.47792 -31.98532 -30.55181 -29.05287 -26.98815 -26.61304 -25.02102 -24.01366 -22.61831 -21.10979 -19.13259 -18.12388 -16.88187 -15.56461 -14.88334 -14.53226 -14.26391 -13.71942 -13.59320 -13.52896 -13.34108 -13.14384 -12.87160 -12.02627 -11.91270 -11.61952 -11.55052 -11.42363 -11.24529 -11.04751 -10.93320 -10.87346 -10.69694 -10.39998 -10.34432 -10.27451 -10.03503 -9.93881 -9.70605 -8.41036 -8.22990 -7.75898 -7.05749 -6.10533 -3.93653 3.50167 3.53159 3.68574 4.36157 4.65568 4.97385 5.12719 5.25864 5.38356 5.51861 5.56761 5.58639 5.67696 5.73859 5.77883 5.81666 5.93283 5.97053 6.07383 6.08440 6.13603 6.20112 6.22586 6.36488 6.37673 6.48172 6.49853 6.55141 6.61729 6.64420 6.81111 6.91166 7.05303 7.30653 7.66816 7.71170 8.11759 8.37717 8.71707 8.81531 9.12751 9.89733 11.29337 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.008977 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.626791 B = 3118.355441 C = 3775.337212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.186 4.186 6 N -0.523 5.523 7 C 0.033 3.967 8 C 0.210 3.790 9 H 0.042 0.958 10 C -0.617 4.617 11 H 0.043 0.957 12 C 0.039 3.961 13 N -0.892 5.892 14 Si 1.064 2.936 15 H -0.291 1.291 16 H -0.286 1.286 17 H -0.292 1.292 18 N -0.659 5.659 19 C 0.104 3.896 20 C -0.121 4.121 21 C -0.134 4.134 22 C 0.033 3.967 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.293 0.707 34 H 0.323 0.677 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -0.137 12.016 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.030 4.030 4 H 0.089 0.911 5 C -0.244 4.244 6 N -0.247 5.247 7 C -0.096 4.096 8 C 0.103 3.897 9 H 0.059 0.941 10 C -0.656 4.656 11 H 0.062 0.938 12 C -0.171 4.171 13 N -0.526 5.526 14 Si 0.893 3.107 15 H -0.218 1.218 16 H -0.212 1.212 17 H -0.219 1.219 18 N -0.289 5.289 19 C 0.012 3.988 20 C -0.179 4.179 21 C -0.192 4.192 22 C -0.097 4.097 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.089 0.055 9.882 9.882 hybrid contribution 1.652 -0.338 2.652 3.143 sum 1.563 -0.283 12.534 12.634 Atomic orbital electron populations 1.21630 0.95326 1.00483 1.02417 1.21589 0.96795 0.95509 1.01454 1.21729 0.92589 0.95413 0.93293 0.91060 1.22459 0.98552 1.01642 1.01793 1.62396 1.58756 1.01656 1.01889 1.22990 0.95889 0.98925 0.91800 1.19355 0.96997 0.83221 0.90168 0.94057 1.21789 1.32302 1.19503 0.91996 0.93831 1.25529 0.95746 0.96035 0.99826 1.70509 1.25406 1.19685 1.36975 0.83649 0.75940 0.75158 0.75916 1.21802 1.21216 1.21874 1.61347 1.14305 1.15509 1.37778 1.20997 0.95969 0.92955 0.88868 1.21656 0.93892 1.02536 0.99821 1.21775 1.00241 0.95765 1.01409 1.22840 0.97344 0.89617 0.99879 0.93642 0.91183 0.93796 0.91519 0.92621 0.92135 0.92931 0.92845 0.91385 0.96038 0.89445 0.85910 0.94342 0.92873 0.91508 0.93657 0.91776 0.93405 0.92169 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.80 37.16 0.36 -1.58 16 2 C -0.12 -1.62 5.22 -26.73 -0.14 -1.76 16 3 C 0.08 1.17 2.35 -67.71 -0.16 1.01 16 4 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 5 C -0.19 -2.62 8.49 37.16 0.32 -2.30 16 6 N -0.52 -9.18 3.47 -226.49 -0.79 -9.96 16 7 C 0.03 0.68 4.04 -3.77 -0.02 0.66 16 8 C 0.21 5.09 1.69 -68.81 -0.12 4.97 16 9 H 0.04 1.12 6.21 -51.93 -0.32 0.80 16 10 C -0.62 -16.93 8.69 -34.44 -0.30 -17.23 16 11 H 0.04 1.21 7.74 -52.48 -0.41 0.80 16 12 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 13 N -0.89 -26.60 13.51 55.43 0.75 -25.85 16 14 Si 1.06 25.23 29.90 -169.99 -5.08 20.15 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 N -0.66 -14.87 4.57 -94.12 -0.43 -15.30 16 19 C 0.10 1.94 0.95 -131.55 -0.12 1.82 16 20 C -0.12 -2.28 8.13 37.16 0.30 -1.98 16 21 C -0.13 -2.18 8.73 37.16 0.32 -1.85 16 22 C 0.03 0.57 3.95 -3.76 -0.01 0.56 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.04 6.11 -51.93 -0.32 0.72 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.94 6.46 -51.93 -0.34 0.61 16 29 H 0.05 0.75 6.59 -51.93 -0.34 0.41 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.44 6.07 -51.93 -0.32 1.12 16 32 H 0.02 0.46 6.47 -51.93 -0.34 0.12 16 33 H 0.29 8.71 6.40 -40.82 -0.26 8.45 16 34 H 0.32 7.48 8.70 -39.29 -0.34 7.14 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.38 5.94 -51.93 -0.31 1.07 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -28.03 310.73 -8.00 -36.03 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.47 Total: 6.94 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 0.34 Total: -16.69 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.47 Total: -51.11 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.03 -8.00 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220414576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.660 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds