Wall clock time and date at job start Mon Mar 30 2020 03:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47286 * 2 1 4 4 H 1.09003 * 109.47155 * 55.00389 * 3 2 1 5 5 C 1.53008 * 109.47125 * 175.00025 * 3 2 1 6 6 N 1.46897 * 109.47236 * 295.00057 * 3 2 1 7 7 C 1.46956 * 111.00025 * 298.95577 * 6 3 2 8 8 C 1.53052 * 109.36017 * 176.81183 * 7 6 3 9 9 H 1.08994 * 109.49115 * 298.40535 * 8 7 6 10 10 C 1.50703 * 109.48624 * 178.36802 * 8 7 6 11 11 H 1.08006 * 120.00159 * 0.04100 * 10 8 7 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 N 1.46956 * 109.38639 * 58.39045 * 8 7 6 19 19 C 1.46954 * 110.87985 * 300.71391 * 18 8 7 20 20 C 1.53005 * 109.46976 * 299.31907 * 19 18 8 21 21 C 1.52996 * 109.49018 * 179.26595 * 19 18 8 22 22 C 1.46962 * 110.99871 * 175.15505 * 6 3 2 23 23 H 1.09004 * 109.46715 * 300.00109 * 1 2 3 24 24 H 1.08996 * 109.47111 * 59.99275 * 1 2 3 25 25 H 1.09000 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46715 * 239.99891 * 2 1 3 27 27 H 1.09006 * 109.47123 * 120.00584 * 2 1 3 28 28 H 1.09003 * 109.46806 * 60.00151 * 5 3 2 29 29 H 1.08993 * 109.47033 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.47207 * 300.00256 * 5 3 2 31 31 H 1.08997 * 109.49279 * 56.84371 * 7 6 3 32 32 H 1.08997 * 109.50621 * 296.78511 * 7 6 3 33 33 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 34 34 H 1.00906 * 110.99584 * 64.55512 * 18 8 7 35 35 H 1.08992 * 109.47323 * 179.90633 * 20 19 18 36 36 H 1.09002 * 109.46926 * 299.90308 * 20 19 18 37 37 H 1.08999 * 109.47081 * 59.89628 * 20 19 18 38 38 H 1.09006 * 109.47215 * 300.07991 * 21 19 18 39 39 H 1.08995 * 109.47673 * 60.08277 * 21 19 18 40 40 H 1.09001 * 109.47352 * 180.08549 * 21 19 18 41 41 H 1.09000 * 109.49001 * 303.15755 * 22 6 3 42 42 H 1.08995 * 109.48835 * 63.19723 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 1.6514 2.0992 -1.2552 7 6 2.2409 1.4128 -2.4132 8 6 1.7492 2.0774 -3.7013 9 1 0.6651 1.9860 -3.7667 10 6 2.3833 1.4013 -4.8895 11 1 3.0680 0.5792 -4.7413 12 6 2.0892 1.8318 -6.1659 13 7 1.2548 2.8323 -6.3464 14 14 2.8746 0.9933 -7.6387 15 1 4.1527 1.6723 -7.9716 16 1 1.9547 1.0718 -8.8018 17 1 3.1409 -0.4311 -7.3136 18 7 2.1217 3.4989 -3.6896 19 6 1.5327 4.1852 -2.5313 20 6 0.0073 4.0911 -2.6041 21 6 1.9549 5.6558 -2.5403 22 6 2.0243 3.5207 -1.2432 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9995 0.9052 -0.7161 29 1 3.9282 2.4718 0.1262 30 1 3.8533 0.9569 1.0570 31 1 1.9401 0.3652 -2.4068 32 1 3.3276 1.4796 -2.3615 33 1 0.8467 3.2674 -5.5816 34 1 3.1245 3.6101 -3.7040 35 1 -0.4295 4.5986 -1.7441 36 1 -0.3425 4.5644 -3.5216 37 1 -0.2927 3.0432 -2.5987 38 1 3.0417 5.7221 -2.4893 39 1 1.6047 6.1288 -3.4577 40 1 1.5191 6.1642 -1.6802 41 1 1.5657 4.0098 -0.3838 42 1 3.1085 3.6116 -1.1775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220414576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:25 Heat of formation + Delta-G solvation = -23.986319 kcal Electronic energy + Delta-G solvation = -19214.956449 eV Core-core repulsion = 16614.528161 eV Total energy + Delta-G solvation = -2600.428288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01291 -37.68707 -35.40349 -33.34585 -32.35387 -30.31874 -28.63860 -28.07232 -26.77685 -25.54410 -23.88946 -22.92701 -20.45869 -19.73722 -18.87607 -16.98625 -16.39165 -16.04873 -15.82032 -15.56857 -15.25097 -14.89020 -14.69426 -14.43691 -14.19963 -13.74883 -13.33227 -13.25365 -12.91393 -12.76355 -12.71884 -12.57469 -12.42332 -12.38784 -12.16246 -12.02927 -11.90326 -11.68291 -11.58437 -11.49824 -11.29944 -10.44932 -10.37874 -9.23885 -8.81096 -8.27760 -6.18045 1.56237 1.64550 1.81365 2.64624 3.00290 3.30361 3.71283 3.79887 4.05708 4.11858 4.15188 4.25180 4.28870 4.39149 4.47864 4.50720 4.65088 4.65333 4.73163 4.77126 4.83919 4.85655 4.89871 4.97412 5.02622 5.12329 5.13148 5.14936 5.23537 5.32261 5.39653 5.45642 5.50835 5.53378 5.96798 6.20950 6.30789 6.33461 6.77076 6.86795 7.01963 7.73201 9.04485 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.008977 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.626791 B = 3118.355441 C = 3775.337212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.091 0.909 5 C -0.179 4.179 6 N -0.527 5.527 7 C 0.054 3.946 8 C 0.215 3.785 9 H 0.007 0.993 10 C -0.629 4.629 11 H 0.034 0.966 12 C -0.008 4.008 13 N -0.919 5.919 14 Si 1.109 2.891 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.673 5.673 19 C 0.098 3.902 20 C -0.113 4.113 21 C -0.126 4.126 22 C 0.039 3.961 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.281 0.719 34 H 0.318 0.682 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 0.046 14.123 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.032 4.032 4 H 0.109 0.891 5 C -0.237 4.237 6 N -0.251 5.251 7 C -0.075 4.075 8 C 0.107 3.893 9 H 0.024 0.976 10 C -0.668 4.668 11 H 0.053 0.947 12 C -0.212 4.212 13 N -0.554 5.554 14 Si 0.934 3.066 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.204 1.204 18 N -0.303 5.303 19 C 0.006 3.994 20 C -0.170 4.170 21 C -0.184 4.184 22 C -0.090 4.090 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.554 0.238 12.018 12.033 hybrid contribution 1.407 -0.402 2.083 2.546 sum 1.962 -0.164 14.101 14.238 Atomic orbital electron populations 1.21574 0.95170 1.00999 1.01650 1.21592 0.96883 0.95058 1.01632 1.21874 0.93396 0.95818 0.92064 0.89108 1.22385 0.97582 1.01584 1.02199 1.62340 1.58658 1.02010 1.02061 1.22540 0.95011 0.98185 0.91808 1.19043 0.94559 0.84631 0.91067 0.97553 1.22150 1.31740 1.19353 0.93554 0.94724 1.26829 0.95571 0.95961 1.02878 1.70618 1.27147 1.21182 1.36473 0.83033 0.75514 0.75087 0.72989 1.20528 1.21271 1.20379 1.61098 1.13865 1.14615 1.40707 1.21168 0.95504 0.94302 0.88379 1.21564 0.94315 1.01014 1.00133 1.21699 1.00804 0.93833 1.02042 1.22773 0.97507 0.89152 0.99607 0.91995 0.94206 0.92764 0.93750 0.89950 0.94237 0.92987 0.90308 0.92496 0.96979 0.90673 0.86550 0.91197 0.94945 0.93981 0.93034 0.93301 0.90290 0.89539 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.80 71.98 0.71 -2.83 16 2 C -0.11 -2.97 5.22 30.59 0.16 -2.81 16 3 C 0.08 2.09 2.35 44.92 0.11 2.20 16 4 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 5 C -0.18 -4.60 8.49 71.98 0.61 -3.99 16 6 N -0.53 -17.97 3.47 -870.47 -3.02 -20.99 16 7 C 0.05 2.28 4.04 86.31 0.35 2.63 16 8 C 0.21 10.79 1.69 44.18 0.07 10.87 16 9 H 0.01 0.38 6.21 -2.39 -0.01 0.36 16 10 C -0.63 -35.57 8.69 25.60 0.22 -35.35 16 11 H 0.03 1.97 7.74 -2.91 -0.02 1.94 16 12 C -0.01 -0.47 5.39 84.65 0.46 -0.01 16 13 N -0.92 -56.42 13.51 21.45 0.29 -56.13 16 14 Si 1.11 51.45 29.90 68.60 2.05 53.50 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 N -0.67 -31.02 4.57 -451.69 -2.06 -33.09 16 19 C 0.10 3.58 0.95 3.53 0.00 3.58 16 20 C -0.11 -4.21 8.13 71.98 0.58 -3.63 16 21 C -0.13 -3.87 8.73 71.98 0.63 -3.24 16 22 C 0.04 1.26 3.95 86.31 0.34 1.60 16 23 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.04 1.26 7.75 -2.39 -0.02 1.24 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.36 6.11 -2.38 -0.01 1.34 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.04 1.18 6.46 -2.39 -0.02 1.16 16 29 H 0.05 1.34 6.59 -2.39 -0.02 1.32 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.49 6.07 -2.39 -0.01 2.47 16 32 H 0.01 0.53 6.47 -2.39 -0.02 0.51 16 33 H 0.28 17.48 6.40 -92.71 -0.59 16.88 16 34 H 0.32 14.97 8.70 -89.69 -0.78 14.19 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.77 5.94 -2.39 -0.01 1.75 16 38 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 42 H 0.02 0.80 6.59 -2.39 -0.02 0.79 16 Total: -1.00 -62.30 310.73 1.87 -60.43 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.37 Total: 27.25 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 4.24 Total: -30.98 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.80 Total: -110.20 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -62.30 1.87 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220414576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.444 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds