Wall clock time and date at job start Mon Mar 30 2020 03:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 N 1.46895 * 109.47668 * 179.97438 * 3 2 1 5 5 C 1.46959 * 110.99894 * 293.80235 * 4 3 2 6 6 C 1.53060 * 109.36260 * 176.80922 * 5 4 3 7 7 H 1.09002 * 109.50642 * 298.42207 * 6 5 4 8 8 C 1.50693 * 109.48742 * 178.36663 * 6 5 4 9 9 H 1.08008 * 119.99926 * 275.12632 * 8 6 5 10 10 C 1.37876 * 120.00274 * 95.12702 * 8 6 5 11 11 N 1.31514 * 120.00342 * 184.87246 * 10 8 6 12 12 Si 1.86806 * 119.99653 * 4.86837 * 10 8 6 13 13 H 1.48489 * 109.47085 * 84.75157 * 12 10 8 14 14 H 1.48501 * 109.46951 * 204.74997 * 12 10 8 15 15 H 1.48501 * 109.47121 * 324.74856 * 12 10 8 16 16 N 1.46959 * 109.36401 * 58.39658 * 6 5 4 17 17 C 1.46900 * 110.99789 * 176.80746 * 16 6 5 18 18 C 1.46951 * 110.88099 * 300.67992 * 16 6 5 19 19 C 1.46954 * 111.00358 * 169.99859 * 4 3 2 20 20 C 1.53001 * 109.48712 * 303.15659 * 19 4 3 21 21 C 1.52998 * 109.48871 * 63.22322 * 19 4 3 22 22 H 1.08997 * 109.47392 * 59.99765 * 1 2 3 23 23 H 1.08995 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46502 * 300.00052 * 1 2 3 25 25 H 1.09003 * 109.47227 * 239.99778 * 2 1 3 26 26 H 1.09000 * 109.47117 * 119.99796 * 2 1 3 27 27 H 1.09003 * 109.47082 * 59.99689 * 3 2 1 28 28 H 1.09006 * 109.47075 * 300.00637 * 3 2 1 29 29 H 1.08993 * 109.48804 * 296.77223 * 5 4 3 30 30 H 1.08995 * 109.49190 * 56.84282 * 5 4 3 31 31 H 0.96999 * 120.00080 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47091 * 182.43822 * 17 16 6 33 33 H 1.08997 * 109.47208 * 302.44105 * 17 16 6 34 34 H 1.09003 * 109.46350 * 62.44167 * 17 16 6 35 35 H 1.08993 * 109.49021 * 299.35488 * 18 16 6 36 36 H 1.09008 * 109.48983 * 179.28569 * 18 16 6 37 37 H 1.09004 * 109.47336 * 60.00002 * 20 19 4 38 38 H 1.09006 * 109.46833 * 179.97438 * 20 19 4 39 39 H 1.09000 * 109.47656 * 299.99695 * 20 19 4 40 40 H 1.08995 * 109.47113 * 59.99936 * 21 19 4 41 41 H 1.08997 * 109.47340 * 180.02562 * 21 19 4 42 42 H 1.09006 * 109.47076 * 299.99971 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0352 0.8890 1.2562 6 6 5.5631 0.8328 1.1852 7 1 5.8656 0.1756 0.3699 8 6 6.1077 0.3031 2.4866 9 1 6.2725 0.9747 3.3163 10 6 6.3957 -1.0388 2.6182 11 7 6.7796 -1.5181 3.7811 12 14 6.2403 -2.1762 1.1445 13 1 7.4916 -2.1263 0.3466 14 1 6.0078 -3.5657 1.6141 15 1 5.0979 -1.7409 0.3015 16 7 6.0898 2.1839 0.9469 17 6 7.5588 2.1839 0.9476 18 6 5.5637 2.7373 -0.3087 19 6 4.0358 2.7936 -0.2376 20 6 3.4828 3.3313 -1.5590 21 6 3.6116 3.7160 0.9069 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.7330 1.5245 2.0886 30 1 3.6408 -0.1163 1.4040 31 1 6.9825 -2.4621 3.8736 32 1 7.9222 3.2026 0.8123 33 1 7.9217 1.7919 1.8976 34 1 7.9224 1.5573 0.1331 35 1 5.8658 2.1018 -1.1410 36 1 5.9580 3.7428 -0.4565 37 1 2.3946 3.3694 -1.5088 38 1 3.8734 4.3337 -1.7352 39 1 3.7862 2.6744 -2.3741 40 1 4.0067 3.3328 1.8478 41 1 4.0021 4.7181 0.7298 42 1 2.5235 3.7543 0.9585 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220415421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:34 Heat of formation + Delta-G solvation = 6.929088 kcal Electronic energy + Delta-G solvation = -19156.840448 eV Core-core repulsion = 16557.752752 eV Total energy + Delta-G solvation = -2599.087696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54891 -35.72659 -33.94230 -32.48311 -31.44404 -28.50255 -27.27295 -26.72434 -24.84602 -23.82369 -22.90214 -20.67465 -19.91705 -17.74189 -16.94703 -15.54540 -15.25467 -14.85612 -14.27162 -14.14657 -13.81814 -13.52289 -13.08493 -12.87582 -12.66541 -12.40595 -12.23122 -12.02942 -11.66123 -11.42434 -11.33321 -11.24028 -11.04550 -10.88433 -10.71404 -10.58772 -10.31108 -10.25023 -9.99557 -9.81238 -9.63787 -9.09108 -8.58098 -7.66877 -7.22653 -6.11212 -4.11151 3.28057 3.36816 3.43970 4.37152 4.40748 4.85384 5.14944 5.17608 5.26759 5.33217 5.48986 5.54483 5.62326 5.72481 5.81173 5.87777 5.98511 6.01173 6.10140 6.12927 6.15654 6.18710 6.20956 6.33421 6.35353 6.38078 6.45379 6.51331 6.56800 6.57744 6.77784 6.88650 7.04145 7.20932 7.49883 7.72542 7.81757 8.03322 8.16497 8.66185 8.99630 9.53010 11.01100 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.010854 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.368319 B = 2579.030576 C = 3508.357687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.052 3.948 4 N -0.537 5.537 5 C 0.065 3.935 6 C 0.190 3.810 7 H 0.009 0.991 8 C -0.504 4.504 9 H 0.080 0.920 10 C 0.076 3.924 11 N -0.895 5.895 12 Si 0.867 3.133 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.258 1.258 16 N -0.534 5.534 17 C 0.041 3.959 18 C 0.067 3.933 19 C 0.110 3.890 20 C -0.139 4.139 21 C -0.168 4.168 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.008 0.992 35 H 0.027 0.973 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 6.910 -9.252 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.076 4.076 4 N -0.262 5.262 5 C -0.062 4.062 6 C 0.083 3.917 7 H 0.027 0.973 8 C -0.543 4.543 9 H 0.098 0.902 10 C -0.127 4.127 11 N -0.532 5.532 12 Si 0.694 3.306 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.183 1.183 16 N -0.259 5.259 17 C -0.107 4.107 18 C -0.062 4.062 19 C 0.020 3.980 20 C -0.197 4.197 21 C -0.227 4.227 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.989 6.730 -9.146 13.884 hybrid contribution -0.019 -0.769 -0.718 1.052 sum -8.008 5.962 -9.864 14.035 Atomic orbital electron populations 1.21722 0.96201 1.01307 1.01294 1.21559 0.94671 0.97148 1.02877 1.22169 0.88857 0.96507 1.00094 1.62515 1.06241 1.20248 1.37177 1.22606 0.97144 0.98495 0.87973 1.19725 0.90361 0.85108 0.96540 0.97308 1.20866 1.42494 0.93628 0.97315 0.90153 1.24998 0.94374 0.97879 0.95474 1.69893 1.45812 1.14259 1.23242 0.86989 0.79601 0.80127 0.83836 1.20381 1.21537 1.18253 1.62208 1.07394 1.25452 1.30837 1.22134 0.88048 0.98508 1.02025 1.22087 0.93108 0.98833 0.92177 1.20990 0.94590 0.88184 0.94224 1.21902 1.00516 1.00229 0.97018 1.22318 0.99676 0.99458 1.01205 0.93113 0.92892 0.93010 0.91614 0.91615 0.95221 0.91247 0.94314 0.91328 0.92568 0.93808 0.89683 0.97329 0.95454 0.91845 0.92618 0.92637 0.92272 0.90383 0.93076 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.86 5.87 -26.73 -0.16 -2.02 16 3 C 0.05 0.80 4.11 -3.83 -0.02 0.78 16 4 N -0.54 -9.89 4.48 -218.82 -0.98 -10.87 16 5 C 0.07 1.42 4.29 -3.76 -0.02 1.40 16 6 C 0.19 4.52 1.61 -68.80 -0.11 4.41 16 7 H 0.01 0.24 5.30 -51.93 -0.27 -0.04 16 8 C -0.50 -13.84 7.46 -34.44 -0.26 -14.10 16 9 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 10 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 12 Si 0.87 21.55 26.99 -169.99 -4.59 16.96 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.26 -6.29 6.82 56.52 0.39 -5.90 16 16 N -0.53 -11.36 4.09 -236.13 -0.97 -12.32 16 17 C 0.04 0.83 9.32 60.06 0.56 1.39 16 18 C 0.07 1.21 4.33 -3.77 -0.02 1.20 16 19 C 0.11 1.83 0.68 -131.55 -0.09 1.74 16 20 C -0.14 -1.86 8.18 37.16 0.30 -1.56 16 21 C -0.17 -2.69 7.65 37.16 0.28 -2.41 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.09 6.49 -51.93 -0.34 0.76 16 27 H 0.03 0.46 6.90 -51.93 -0.36 0.11 16 28 H 0.07 0.96 5.73 -51.93 -0.30 0.66 16 29 H 0.04 0.87 6.35 -51.93 -0.33 0.54 16 30 H 0.07 1.56 6.34 -51.93 -0.33 1.23 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.90 6.91 -51.93 -0.36 1.54 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.05 0.69 6.15 -51.93 -0.32 0.37 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.48 5.94 -51.93 -0.31 1.17 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.63 6.71 -51.93 -0.35 0.29 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -28.87 308.18 -7.84 -36.72 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.49 Total: -0.63 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.76 Total: -8.50 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.17 Total: -49.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.87 -7.84 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds