Wall clock time and date at job start Mon Mar 30 2020 03:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 N 1.46895 * 109.47668 * 179.97438 * 3 2 1 5 5 C 1.46959 * 110.99894 * 293.80235 * 4 3 2 6 6 C 1.53060 * 109.36260 * 176.80922 * 5 4 3 7 7 H 1.09002 * 109.50642 * 298.42207 * 6 5 4 8 8 C 1.50693 * 109.48742 * 178.36663 * 6 5 4 9 9 H 1.08008 * 119.99926 * 275.12632 * 8 6 5 10 10 C 1.37876 * 120.00274 * 95.12702 * 8 6 5 11 11 N 1.31514 * 120.00342 * 184.87246 * 10 8 6 12 12 Si 1.86806 * 119.99653 * 4.86837 * 10 8 6 13 13 H 1.48489 * 109.47085 * 84.75157 * 12 10 8 14 14 H 1.48501 * 109.46951 * 204.74997 * 12 10 8 15 15 H 1.48501 * 109.47121 * 324.74856 * 12 10 8 16 16 N 1.46959 * 109.36401 * 58.39658 * 6 5 4 17 17 C 1.46900 * 110.99789 * 176.80746 * 16 6 5 18 18 C 1.46951 * 110.88099 * 300.67992 * 16 6 5 19 19 C 1.46954 * 111.00358 * 169.99859 * 4 3 2 20 20 C 1.53001 * 109.48712 * 303.15659 * 19 4 3 21 21 C 1.52998 * 109.48871 * 63.22322 * 19 4 3 22 22 H 1.08997 * 109.47392 * 59.99765 * 1 2 3 23 23 H 1.08995 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46502 * 300.00052 * 1 2 3 25 25 H 1.09003 * 109.47227 * 239.99778 * 2 1 3 26 26 H 1.09000 * 109.47117 * 119.99796 * 2 1 3 27 27 H 1.09003 * 109.47082 * 59.99689 * 3 2 1 28 28 H 1.09006 * 109.47075 * 300.00637 * 3 2 1 29 29 H 1.08993 * 109.48804 * 296.77223 * 5 4 3 30 30 H 1.08995 * 109.49190 * 56.84282 * 5 4 3 31 31 H 0.96999 * 120.00080 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47091 * 182.43822 * 17 16 6 33 33 H 1.08997 * 109.47208 * 302.44105 * 17 16 6 34 34 H 1.09003 * 109.46350 * 62.44167 * 17 16 6 35 35 H 1.08993 * 109.49021 * 299.35488 * 18 16 6 36 36 H 1.09008 * 109.48983 * 179.28569 * 18 16 6 37 37 H 1.09004 * 109.47336 * 60.00002 * 20 19 4 38 38 H 1.09006 * 109.46833 * 179.97438 * 20 19 4 39 39 H 1.09000 * 109.47656 * 299.99695 * 20 19 4 40 40 H 1.08995 * 109.47113 * 59.99936 * 21 19 4 41 41 H 1.08997 * 109.47340 * 180.02562 * 21 19 4 42 42 H 1.09006 * 109.47076 * 299.99971 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0352 0.8890 1.2562 6 6 5.5631 0.8328 1.1852 7 1 5.8656 0.1756 0.3699 8 6 6.1077 0.3031 2.4866 9 1 6.2725 0.9747 3.3163 10 6 6.3957 -1.0388 2.6182 11 7 6.7796 -1.5181 3.7811 12 14 6.2403 -2.1762 1.1445 13 1 7.4916 -2.1263 0.3466 14 1 6.0078 -3.5657 1.6141 15 1 5.0979 -1.7409 0.3015 16 7 6.0898 2.1839 0.9469 17 6 7.5588 2.1839 0.9476 18 6 5.5637 2.7373 -0.3087 19 6 4.0358 2.7936 -0.2376 20 6 3.4828 3.3313 -1.5590 21 6 3.6116 3.7160 0.9069 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.7330 1.5245 2.0886 30 1 3.6408 -0.1163 1.4040 31 1 6.9825 -2.4621 3.8736 32 1 7.9222 3.2026 0.8123 33 1 7.9217 1.7919 1.8976 34 1 7.9224 1.5573 0.1331 35 1 5.8658 2.1018 -1.1410 36 1 5.9580 3.7428 -0.4565 37 1 2.3946 3.3694 -1.5088 38 1 3.8734 4.3337 -1.7352 39 1 3.7862 2.6744 -2.3741 40 1 4.0067 3.3328 1.8478 41 1 4.0021 4.7181 0.7298 42 1 2.5235 3.7543 0.9585 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220415421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:33 Heat of formation + Delta-G solvation = -13.043850 kcal Electronic energy + Delta-G solvation = -19157.706539 eV Core-core repulsion = 16557.752752 eV Total energy + Delta-G solvation = -2599.953787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02995 -37.28019 -35.39837 -34.33533 -33.01475 -30.12555 -28.69882 -28.06288 -26.26792 -25.51261 -24.45265 -21.98258 -21.56370 -19.38481 -18.93890 -17.09344 -16.69697 -16.18047 -16.04310 -15.81420 -15.23822 -14.91068 -14.77352 -14.58037 -14.01358 -13.89124 -13.62371 -13.37092 -13.03366 -12.82180 -12.80700 -12.61749 -12.55644 -12.33523 -12.12391 -12.00366 -11.90074 -11.80381 -11.72978 -11.54545 -11.17118 -10.90817 -10.74630 -9.14796 -8.92307 -8.32799 -6.35811 1.27573 1.31299 1.43528 2.29487 2.89881 3.11252 3.34265 3.89030 4.01412 4.13708 4.24945 4.25837 4.47304 4.50174 4.52151 4.58952 4.65374 4.71865 4.72680 4.81378 4.83131 4.86317 4.90668 4.98231 5.01599 5.05915 5.14665 5.19068 5.22069 5.29518 5.32583 5.36502 5.45205 5.58713 5.59769 6.06695 6.24245 6.26953 6.49513 6.68385 6.76757 7.31573 8.83562 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.010854 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.368319 B = 2579.030576 C = 3508.357687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.053 3.947 4 N -0.545 5.545 5 C 0.080 3.920 6 C 0.196 3.804 7 H -0.005 1.005 8 C -0.499 4.499 9 H 0.037 0.963 10 C 0.024 3.976 11 N -0.940 5.940 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.251 1.251 16 N -0.546 5.546 17 C 0.045 3.955 18 C 0.065 3.935 19 C 0.103 3.897 20 C -0.130 4.130 21 C -0.160 4.160 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.008 0.992 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 8.253 -12.101 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.074 4.074 4 N -0.269 5.269 5 C -0.049 4.049 6 C 0.088 3.912 7 H 0.013 0.987 8 C -0.539 4.539 9 H 0.055 0.945 10 C -0.174 4.174 11 N -0.580 5.580 12 Si 0.754 3.246 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.175 1.175 16 N -0.270 5.270 17 C -0.104 4.104 18 C -0.063 4.063 19 C 0.014 3.986 20 C -0.188 4.188 21 C -0.219 4.219 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.564 8.097 -12.013 17.359 hybrid contribution 0.487 -1.071 0.211 1.196 sum -9.077 7.025 -11.802 16.463 Atomic orbital electron populations 1.21666 0.93587 1.02194 1.02355 1.21560 0.96970 0.96521 1.01274 1.22268 0.86799 0.97108 1.01211 1.62476 1.08216 1.21723 1.34531 1.22172 0.95594 0.97660 0.89432 1.19516 0.91717 0.86243 0.93707 0.98713 1.20978 1.41942 0.93125 0.97809 0.94471 1.25710 0.94335 0.99436 0.97940 1.70022 1.47810 1.14779 1.25377 0.85994 0.79818 0.78192 0.80553 1.19820 1.20969 1.17476 1.62129 1.07896 1.23633 1.33337 1.22092 0.87704 1.00411 1.00151 1.22257 0.94396 0.99710 0.89972 1.21202 0.93661 0.87374 0.96394 1.21841 1.01362 1.01146 0.94409 1.22218 1.00462 1.00055 0.99122 0.91214 0.92201 0.92719 0.92145 0.94312 0.95352 0.88547 0.95886 0.93036 0.92419 0.90327 0.93001 0.97365 0.96038 0.89133 0.91138 0.90377 0.92378 0.94021 0.91157 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.13 -3.54 5.87 30.59 0.18 -3.36 16 3 C 0.05 1.52 4.11 86.30 0.35 1.87 16 4 N -0.54 -19.16 4.48 -846.23 -3.79 -22.95 16 5 C 0.08 3.50 4.29 86.31 0.37 3.88 16 6 C 0.20 9.49 1.61 44.18 0.07 9.57 16 7 H 0.00 -0.24 5.30 -2.39 -0.01 -0.25 16 8 C -0.50 -28.70 7.46 25.60 0.19 -28.51 16 9 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 10 C 0.02 1.42 5.47 84.65 0.46 1.89 16 11 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 12 Si 0.93 45.51 26.99 68.60 1.85 47.36 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 15 H -0.25 -11.88 6.82 99.48 0.68 -11.20 16 16 N -0.55 -23.03 4.09 -900.97 -3.69 -26.72 16 17 C 0.04 1.80 9.32 127.69 1.19 2.99 16 18 C 0.06 2.19 4.33 86.31 0.37 2.57 16 19 C 0.10 3.14 0.68 3.53 0.00 3.14 16 20 C -0.13 -2.88 8.18 71.98 0.59 -2.29 16 21 C -0.16 -4.74 7.65 71.98 0.55 -4.19 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.29 6.49 -2.39 -0.02 1.27 16 27 H 0.03 0.83 6.90 -2.39 -0.02 0.81 16 28 H 0.10 2.26 5.73 -2.38 -0.01 2.24 16 29 H 0.02 1.07 6.35 -2.39 -0.02 1.05 16 30 H 0.05 2.40 6.34 -2.39 -0.02 2.38 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.05 2.40 6.91 -2.39 -0.02 2.38 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.07 1.37 6.15 -2.39 -0.01 1.35 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.54 5.94 -2.39 -0.01 1.53 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.50 6.71 -2.38 -0.02 1.49 16 Total: -1.00 -65.01 308.18 0.66 -64.35 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.93 Total: 10.88 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.05 Total: -14.68 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -7.17 Total: -107.90 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.85 Total: 47.36 kcal Total: -65.01 0.66 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.307 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds