Wall clock time and date at job start Mon Mar 30 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 N 1.46895 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.46957 * 111.00200 * 66.04732 * 4 3 2 6 6 C 1.53049 * 109.36583 * 183.18788 * 5 4 3 7 7 H 1.09002 * 109.48861 * 61.59329 * 6 5 4 8 8 C 1.50702 * 109.48821 * 181.62786 * 6 5 4 9 9 H 1.08005 * 119.99284 * 84.82034 * 8 6 5 10 10 C 1.37872 * 120.00522 * 264.81996 * 8 6 5 11 11 N 1.31513 * 119.99673 * 5.23405 * 10 8 6 12 12 Si 1.86795 * 120.00096 * 185.23623 * 10 8 6 13 13 H 1.48495 * 109.47215 * 90.00227 * 12 10 8 14 14 H 1.48503 * 109.46905 * 210.00042 * 12 10 8 15 15 H 1.48495 * 109.47188 * 329.99597 * 12 10 8 16 16 N 1.46951 * 109.36590 * 301.59888 * 6 5 4 17 17 C 1.46905 * 111.00062 * 183.18872 * 16 6 5 18 18 C 1.46953 * 110.88109 * 59.32203 * 16 6 5 19 19 C 1.46960 * 111.00354 * 189.85048 * 4 3 2 20 20 C 1.52998 * 109.48398 * 296.78055 * 19 4 3 21 21 C 1.52997 * 109.48797 * 56.84154 * 19 4 3 22 22 H 1.08993 * 109.47508 * 59.99681 * 1 2 3 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46925 * 299.99653 * 1 2 3 25 25 H 1.08999 * 109.47597 * 240.00289 * 2 1 3 26 26 H 1.09001 * 109.47905 * 119.99872 * 2 1 3 27 27 H 1.09005 * 109.46937 * 60.00354 * 3 2 1 28 28 H 1.08993 * 109.47189 * 300.00514 * 3 2 1 29 29 H 1.09002 * 109.48728 * 303.15733 * 5 4 3 30 30 H 1.09000 * 109.48668 * 63.19997 * 5 4 3 31 31 H 0.97004 * 119.99710 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46799 * 65.43244 * 17 16 6 33 33 H 1.08996 * 109.47228 * 185.43654 * 17 16 6 34 34 H 1.09007 * 109.46940 * 305.43336 * 17 16 6 35 35 H 1.09004 * 109.48855 * 60.64611 * 18 16 6 36 36 H 1.09002 * 109.48926 * 180.71172 * 18 16 6 37 37 H 1.09003 * 109.47818 * 59.99810 * 20 19 4 38 38 H 1.09002 * 109.47094 * 180.02562 * 20 19 4 39 39 H 1.09003 * 109.47019 * 299.99470 * 20 19 4 40 40 H 1.08998 * 109.47373 * 60.00440 * 21 19 4 41 41 H 1.09001 * 109.47295 * 180.02562 * 21 19 4 42 42 H 1.09004 * 109.47321 * 300.00277 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0351 0.8858 -1.2547 6 6 5.5629 0.8299 -1.1836 7 1 5.8652 0.1746 -0.3667 8 6 6.1076 0.2967 -2.4836 9 1 6.2715 0.9659 -3.3153 10 6 6.3966 -1.0454 -2.6112 11 7 6.1016 -1.8771 -1.6362 12 14 7.2073 -1.6821 -4.1690 13 1 8.6834 -1.6332 -4.0144 14 1 6.7812 -3.0839 -4.4112 15 1 6.8017 -0.8357 -5.3196 16 7 6.0896 2.1816 -0.9490 17 6 7.5586 2.1817 -0.9496 18 6 5.5635 2.7384 0.3051 19 6 4.0357 2.7943 0.2341 20 6 3.6114 3.7137 -0.9129 21 6 3.4827 3.3356 1.5539 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.6407 -0.1199 -1.3998 30 1 3.7325 1.5189 -2.0888 31 1 6.3047 -2.8214 -1.7261 32 1 7.9215 1.9207 -1.9437 33 1 7.9220 3.1729 -0.6787 34 1 7.9223 1.4513 -0.2267 35 1 5.8658 2.1051 1.1392 36 1 5.9579 3.7442 0.4502 37 1 2.5232 3.7518 -0.9646 38 1 4.0026 4.7161 -0.7389 39 1 4.0065 3.3280 -1.8528 40 1 3.7861 2.6808 2.3708 41 1 3.8732 4.3383 1.7275 42 1 2.3945 3.3735 1.5037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220415484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:36 Heat of formation + Delta-G solvation = 4.169152 kcal Electronic energy + Delta-G solvation = -19060.074931 eV Core-core repulsion = 16460.867555 eV Total energy + Delta-G solvation = -2599.207376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33991 -35.53475 -33.81889 -32.44664 -31.16420 -28.09349 -27.02997 -26.61063 -24.70308 -23.90994 -22.72411 -20.52486 -19.99489 -17.52542 -16.47114 -15.28879 -15.09819 -14.74459 -14.42008 -13.89922 -13.65506 -13.41471 -13.14521 -12.62922 -12.51764 -12.26372 -11.90561 -11.80266 -11.53716 -11.22099 -11.20255 -11.06454 -10.95135 -10.80354 -10.70038 -10.47407 -10.41034 -10.13309 -9.95732 -9.69902 -9.43893 -8.97050 -8.46517 -7.46271 -7.02504 -6.03400 -4.08504 3.29398 3.36663 3.40145 4.39205 4.57290 5.04326 5.28504 5.30551 5.40092 5.45784 5.62112 5.70051 5.75496 5.85505 5.93568 5.98456 6.11352 6.14157 6.21656 6.24394 6.27735 6.28310 6.36849 6.47181 6.51717 6.58893 6.63703 6.66378 6.76077 6.83783 6.95949 7.04847 7.32407 7.64856 7.84398 7.87436 7.99738 8.15284 8.32111 8.68798 9.08289 9.58000 11.03872 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.009254 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.584973 B = 3024.904139 C = 3987.033481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.053 3.947 4 N -0.533 5.533 5 C 0.075 3.925 6 C 0.210 3.790 7 H 0.036 0.964 8 C -0.506 4.506 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.544 5.544 17 C 0.049 3.951 18 C 0.070 3.930 19 C 0.111 3.889 20 C -0.167 4.167 21 C -0.139 4.139 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 7.211 4.285 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.075 4.075 4 N -0.257 5.257 5 C -0.053 4.053 6 C 0.104 3.896 7 H 0.054 0.946 8 C -0.545 4.545 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 N -0.269 5.269 17 C -0.100 4.100 18 C -0.059 4.059 19 C 0.021 3.979 20 C -0.226 4.226 21 C -0.197 4.197 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.259 6.998 4.336 10.341 hybrid contribution 0.426 -0.473 -0.819 1.038 sum -5.832 6.525 3.517 9.432 Atomic orbital electron populations 1.21727 0.96526 1.01172 1.01072 1.21532 0.94261 0.97093 1.03155 1.22148 0.89234 0.96483 0.99643 1.62515 1.05823 1.19586 1.37764 1.22475 0.97781 0.98154 0.86869 1.19409 0.89298 0.83432 0.97475 0.94613 1.21001 1.42771 0.92751 0.98022 0.92178 1.25009 0.95318 0.97065 0.96427 1.69982 1.46744 1.03482 1.32189 0.86597 0.79755 0.78037 0.83634 1.20658 1.21323 1.19805 1.62330 1.06980 1.26858 1.30763 1.22005 0.88652 0.97571 1.01737 1.22027 0.93027 0.98367 0.92521 1.20972 0.94687 0.88374 0.93916 1.22315 0.99517 0.99401 1.01343 1.21901 1.00405 1.00089 0.97270 0.93223 0.92961 0.93248 0.91460 0.91479 0.91557 0.95685 0.90773 0.95864 0.92896 0.90946 0.94447 0.96872 0.95464 0.92392 0.94042 0.93300 0.90553 0.92232 0.92843 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.97 5.86 -26.73 -0.16 -2.13 16 3 C 0.05 0.88 4.12 -3.82 -0.02 0.87 16 4 N -0.53 -10.46 4.48 -218.83 -0.98 -11.44 16 5 C 0.07 1.72 4.29 -3.77 -0.02 1.70 16 6 C 0.21 5.29 2.02 -68.81 -0.14 5.15 16 7 H 0.04 1.05 7.38 -51.93 -0.38 0.66 16 8 C -0.51 -13.72 7.05 -34.44 -0.24 -13.96 16 9 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 10 C 0.06 1.78 5.45 -17.82 -0.10 1.68 16 11 N -0.89 -25.38 12.84 55.43 0.71 -24.67 16 12 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 16 N -0.54 -12.04 4.09 -236.13 -0.97 -13.01 16 17 C 0.05 1.02 9.19 60.07 0.55 1.57 16 18 C 0.07 1.34 4.32 -3.77 -0.02 1.33 16 19 C 0.11 1.96 0.68 -131.55 -0.09 1.87 16 20 C -0.17 -2.83 7.65 37.16 0.28 -2.54 16 21 C -0.14 -2.01 8.18 37.16 0.30 -1.71 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.22 6.49 -51.93 -0.34 0.88 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.00 5.74 -51.93 -0.30 0.70 16 28 H 0.02 0.42 6.90 -51.93 -0.36 0.06 16 29 H 0.07 1.85 6.33 -51.93 -0.33 1.53 16 30 H 0.02 0.55 6.35 -51.93 -0.33 0.22 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.07 1.58 7.22 -51.93 -0.37 1.21 16 33 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 34 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.04 0.65 6.71 -51.93 -0.35 0.30 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.50 5.94 -51.93 -0.31 1.19 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.73 6.15 -51.93 -0.32 0.41 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -27.89 311.71 -8.39 -36.28 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.57 Total: -0.31 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 0.73 Total: -7.69 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -1.23 Total: -49.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.89 -8.39 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds