Wall clock time and date at job start Mon Mar 30 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 N 1.46895 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.46957 * 111.00200 * 66.04732 * 4 3 2 6 6 C 1.53049 * 109.36583 * 183.18788 * 5 4 3 7 7 H 1.09002 * 109.48861 * 61.59329 * 6 5 4 8 8 C 1.50702 * 109.48821 * 181.62786 * 6 5 4 9 9 H 1.08005 * 119.99284 * 84.82034 * 8 6 5 10 10 C 1.37872 * 120.00522 * 264.81996 * 8 6 5 11 11 N 1.31513 * 119.99673 * 5.23405 * 10 8 6 12 12 Si 1.86795 * 120.00096 * 185.23623 * 10 8 6 13 13 H 1.48495 * 109.47215 * 90.00227 * 12 10 8 14 14 H 1.48503 * 109.46905 * 210.00042 * 12 10 8 15 15 H 1.48495 * 109.47188 * 329.99597 * 12 10 8 16 16 N 1.46951 * 109.36590 * 301.59888 * 6 5 4 17 17 C 1.46905 * 111.00062 * 183.18872 * 16 6 5 18 18 C 1.46953 * 110.88109 * 59.32203 * 16 6 5 19 19 C 1.46960 * 111.00354 * 189.85048 * 4 3 2 20 20 C 1.52998 * 109.48398 * 296.78055 * 19 4 3 21 21 C 1.52997 * 109.48797 * 56.84154 * 19 4 3 22 22 H 1.08993 * 109.47508 * 59.99681 * 1 2 3 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46925 * 299.99653 * 1 2 3 25 25 H 1.08999 * 109.47597 * 240.00289 * 2 1 3 26 26 H 1.09001 * 109.47905 * 119.99872 * 2 1 3 27 27 H 1.09005 * 109.46937 * 60.00354 * 3 2 1 28 28 H 1.08993 * 109.47189 * 300.00514 * 3 2 1 29 29 H 1.09002 * 109.48728 * 303.15733 * 5 4 3 30 30 H 1.09000 * 109.48668 * 63.19997 * 5 4 3 31 31 H 0.97004 * 119.99710 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46799 * 65.43244 * 17 16 6 33 33 H 1.08996 * 109.47228 * 185.43654 * 17 16 6 34 34 H 1.09007 * 109.46940 * 305.43336 * 17 16 6 35 35 H 1.09004 * 109.48855 * 60.64611 * 18 16 6 36 36 H 1.09002 * 109.48926 * 180.71172 * 18 16 6 37 37 H 1.09003 * 109.47818 * 59.99810 * 20 19 4 38 38 H 1.09002 * 109.47094 * 180.02562 * 20 19 4 39 39 H 1.09003 * 109.47019 * 299.99470 * 20 19 4 40 40 H 1.08998 * 109.47373 * 60.00440 * 21 19 4 41 41 H 1.09001 * 109.47295 * 180.02562 * 21 19 4 42 42 H 1.09004 * 109.47321 * 300.00277 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0351 0.8858 -1.2547 6 6 5.5629 0.8299 -1.1836 7 1 5.8652 0.1746 -0.3667 8 6 6.1076 0.2967 -2.4836 9 1 6.2715 0.9659 -3.3153 10 6 6.3966 -1.0454 -2.6112 11 7 6.1016 -1.8771 -1.6362 12 14 7.2073 -1.6821 -4.1690 13 1 8.6834 -1.6332 -4.0144 14 1 6.7812 -3.0839 -4.4112 15 1 6.8017 -0.8357 -5.3196 16 7 6.0896 2.1816 -0.9490 17 6 7.5586 2.1817 -0.9496 18 6 5.5635 2.7384 0.3051 19 6 4.0357 2.7943 0.2341 20 6 3.6114 3.7137 -0.9129 21 6 3.4827 3.3356 1.5539 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.6407 -0.1199 -1.3998 30 1 3.7325 1.5189 -2.0888 31 1 6.3047 -2.8214 -1.7261 32 1 7.9215 1.9207 -1.9437 33 1 7.9220 3.1729 -0.6787 34 1 7.9223 1.4513 -0.2267 35 1 5.8658 2.1051 1.1392 36 1 5.9579 3.7442 0.4502 37 1 2.5232 3.7518 -0.9646 38 1 4.0026 4.7161 -0.7389 39 1 4.0065 3.3280 -1.8528 40 1 3.7861 2.6808 2.3708 41 1 3.8732 4.3383 1.7275 42 1 2.3945 3.3735 1.5037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220415484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:36 Heat of formation + Delta-G solvation = -14.175085 kcal Electronic energy + Delta-G solvation = -19060.870397 eV Core-core repulsion = 16460.867555 eV Total energy + Delta-G solvation = -2600.002841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91650 -37.17973 -35.38165 -34.25958 -32.77667 -29.76783 -28.57379 -28.03642 -26.26501 -25.63684 -24.36757 -22.00329 -21.64706 -19.12305 -18.54885 -16.96732 -16.68306 -16.24046 -16.03938 -15.62012 -15.22691 -14.99421 -14.68930 -14.21408 -13.87257 -13.66073 -13.58995 -13.31175 -12.90960 -12.80797 -12.70218 -12.63696 -12.56705 -12.31738 -12.23818 -12.07032 -11.92673 -11.71332 -11.59470 -11.45552 -11.07832 -10.87388 -10.53283 -9.05242 -8.85265 -8.14788 -6.26937 1.39441 1.40107 1.50997 2.39748 3.01521 3.20221 3.48422 3.94285 4.05646 4.16529 4.28858 4.30034 4.53054 4.56829 4.62612 4.65443 4.71154 4.75552 4.78587 4.84320 4.88668 4.91522 4.96587 5.02733 5.06192 5.15199 5.18534 5.24872 5.29872 5.34172 5.38026 5.48362 5.59577 5.62680 5.73375 6.10573 6.31240 6.36849 6.55470 6.79763 6.96339 7.43482 8.92274 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.009254 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.584973 B = 3024.904139 C = 3987.033481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.547 5.547 5 C 0.095 3.905 6 C 0.218 3.782 7 H -0.013 1.013 8 C -0.517 4.517 9 H 0.052 0.948 10 C 0.016 3.984 11 N -0.920 5.920 12 Si 0.956 3.044 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.267 1.267 16 N -0.548 5.548 17 C 0.052 3.948 18 C 0.067 3.933 19 C 0.104 3.896 20 C -0.158 4.158 21 C -0.130 4.130 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.075 0.925 34 H -0.006 1.006 35 H 0.009 0.991 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 9.232 4.653 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.271 5.271 5 C -0.033 4.033 6 C 0.111 3.889 7 H 0.005 0.995 8 C -0.556 4.556 9 H 0.071 0.929 10 C -0.183 4.183 11 N -0.559 5.559 12 Si 0.781 3.219 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.191 1.191 16 N -0.272 5.272 17 C -0.096 4.096 18 C -0.061 4.061 19 C 0.014 3.986 20 C -0.216 4.216 21 C -0.188 4.188 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.013 0.987 35 H 0.027 0.973 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.241 9.044 4.710 12.506 hybrid contribution 0.744 -1.050 -0.880 1.559 sum -6.497 7.994 3.830 10.991 Atomic orbital electron populations 1.21658 0.93444 1.02137 1.02363 1.21508 0.96921 0.96538 1.00982 1.22228 0.87141 0.96901 1.00865 1.62440 1.07903 1.21369 1.35434 1.21972 0.96316 0.96596 0.88446 1.19137 0.90719 0.84142 0.94880 0.99518 1.21219 1.42834 0.92993 0.98564 0.92930 1.25764 0.95867 0.97251 0.99459 1.70117 1.47978 1.03653 1.34187 0.85587 0.78868 0.77420 0.79983 1.19980 1.20963 1.19136 1.62292 1.07615 1.24603 1.32718 1.22006 0.88109 0.99173 1.00355 1.22198 0.94568 0.99108 0.90276 1.21178 0.93591 0.87508 0.96313 1.22201 1.00369 0.99963 0.99110 1.21841 1.01337 1.01024 0.94590 0.92555 0.92280 0.91220 0.94633 0.92733 0.88894 0.95457 0.93914 0.96688 0.92940 0.92511 0.90613 0.98730 0.97262 0.89390 0.92605 0.91103 0.93837 0.92851 0.90298 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.91 5.86 30.59 0.18 -3.74 16 3 C 0.06 1.79 4.12 86.31 0.36 2.14 16 4 N -0.55 -21.45 4.48 -846.24 -3.79 -25.24 16 5 C 0.10 4.55 4.29 86.31 0.37 4.92 16 6 C 0.22 11.46 2.02 44.18 0.09 11.55 16 7 H -0.01 -0.81 7.38 -2.39 -0.02 -0.82 16 8 C -0.52 -29.04 7.05 25.60 0.18 -28.86 16 9 H 0.05 2.97 7.82 -2.91 -0.02 2.95 16 10 C 0.02 0.92 5.45 84.65 0.46 1.38 16 11 N -0.92 -54.98 12.84 21.45 0.28 -54.70 16 12 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 N -0.55 -24.41 4.09 -900.97 -3.69 -28.10 16 17 C 0.05 2.18 9.19 127.69 1.17 3.35 16 18 C 0.07 2.51 4.32 86.31 0.37 2.88 16 19 C 0.10 3.48 0.68 3.53 0.00 3.48 16 20 C -0.16 -4.94 7.65 71.98 0.55 -4.39 16 21 C -0.13 -3.30 8.18 71.98 0.59 -2.71 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.03 1.35 6.49 -2.39 -0.02 1.33 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.09 2.49 5.74 -2.38 -0.01 2.48 16 28 H 0.03 0.87 6.90 -2.39 -0.02 0.85 16 29 H 0.04 2.27 6.33 -2.39 -0.02 2.26 16 30 H 0.02 0.73 6.35 -2.39 -0.02 0.72 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.06 2.51 7.22 -2.39 -0.02 2.50 16 33 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 34 H -0.01 -0.27 8.13 -2.38 -0.02 -0.29 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 2.75 8.08 -2.39 -0.02 2.74 16 37 H 0.05 1.57 6.71 -2.39 -0.02 1.56 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.04 1.65 5.94 -2.39 -0.01 1.64 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.57 6.15 -2.38 -0.01 1.56 16 Total: -1.00 -63.19 311.71 0.83 -62.36 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.96 Total: 11.85 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.04 Total: -12.55 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -7.20 Total: -108.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.19 0.83 -62.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.186 kcal (2) G-P(sol) polarization free energy of solvation -63.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds