Wall clock time and date at job start Mon Mar 30 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 N 1.46902 * 109.47441 * 239.99999 * 2 1 3 5 5 C 1.46952 * 110.99972 * 38.12077 * 4 2 1 6 6 C 1.53049 * 109.36653 * 176.81042 * 5 4 2 7 7 H 1.08996 * 109.49173 * 298.41728 * 6 5 4 8 8 C 1.50699 * 109.49352 * 178.36619 * 6 5 4 9 9 H 1.08002 * 120.00326 * 274.94720 * 8 6 5 10 10 C 1.37883 * 119.99485 * 94.94328 * 8 6 5 11 11 N 1.31512 * 119.99926 * 354.68524 * 10 8 6 12 12 Si 1.86801 * 119.99812 * 174.68410 * 10 8 6 13 13 H 1.48495 * 109.47212 * 89.99720 * 12 10 8 14 14 H 1.48493 * 109.47007 * 210.00114 * 12 10 8 15 15 H 1.48503 * 109.46769 * 330.00011 * 12 10 8 16 16 N 1.46965 * 109.36351 * 58.40226 * 6 5 4 17 17 C 1.46890 * 111.00392 * 176.81238 * 16 6 5 18 18 C 1.46958 * 110.87882 * 300.68568 * 16 6 5 19 19 C 1.46959 * 110.99810 * 274.32166 * 4 2 1 20 20 C 1.52997 * 109.49142 * 303.15781 * 19 4 2 21 21 C 1.53003 * 109.48587 * 63.22155 * 19 4 2 22 22 H 1.09006 * 109.47305 * 52.57401 * 1 2 3 23 23 H 1.09004 * 109.46957 * 172.57016 * 1 2 3 24 24 H 1.08995 * 109.47451 * 292.57455 * 1 2 3 25 25 H 1.09003 * 109.46989 * 119.99674 * 2 1 3 26 26 H 1.08996 * 109.47458 * 59.99830 * 3 2 1 27 27 H 1.09005 * 109.47290 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47153 * 299.99356 * 3 2 1 29 29 H 1.09001 * 109.49156 * 296.78218 * 5 4 2 30 30 H 1.09002 * 109.48731 * 56.84750 * 5 4 2 31 31 H 0.97003 * 119.99858 * 179.97438 * 11 10 8 32 32 H 1.08996 * 109.47307 * 63.75426 * 17 16 6 33 33 H 1.09001 * 109.47448 * 183.76213 * 17 16 6 34 34 H 1.09011 * 109.47354 * 303.75762 * 17 16 6 35 35 H 1.09002 * 109.48719 * 179.28411 * 18 16 6 36 36 H 1.09001 * 109.48740 * 299.34680 * 18 16 6 37 37 H 1.09000 * 109.47588 * 67.17795 * 20 19 4 38 38 H 1.08999 * 109.47179 * 187.18571 * 20 19 4 39 39 H 1.08998 * 109.46878 * 307.18274 * 20 19 4 40 40 H 1.08994 * 109.47023 * 47.75500 * 21 19 4 41 41 H 1.09006 * 109.47029 * 167.75487 * 21 19 4 42 42 H 1.09000 * 109.46947 * 287.75369 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.1777 -0.3872 -2.3645 6 6 1.7656 -1.0617 -3.6062 7 1 2.7644 -0.6684 -3.7953 8 6 0.8823 -0.7836 -4.7952 9 1 0.0246 -1.4106 -4.9891 10 6 1.1693 0.2713 -5.6354 11 7 2.1500 1.0971 -5.3426 12 14 0.1651 0.5274 -7.1895 13 1 -0.9950 1.4047 -6.8904 14 1 1.0137 1.1656 -8.2276 15 1 -0.3217 -0.7848 -7.6861 16 7 1.8437 -2.5120 -3.3821 17 6 2.3333 -3.2045 -4.5814 18 6 2.6856 -2.8173 -2.2169 19 6 2.0978 -2.1428 -0.9752 20 6 2.9944 -2.4252 0.2319 21 6 0.6955 -2.6945 -0.7102 22 1 -0.3634 0.6246 -0.8161 23 1 -0.3633 -1.0191 -0.1329 24 1 -0.3634 0.3945 0.9489 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 0.1682 -0.7603 -2.1915 30 1 1.1458 0.6916 -2.5174 31 1 2.3521 1.8391 -5.9339 32 1 3.3533 -2.8846 -4.7946 33 1 2.3182 -4.2810 -4.4110 34 1 1.6918 -2.9617 -5.4286 35 1 2.7175 -3.8961 -2.0640 36 1 3.6950 -2.4442 -2.3899 37 1 2.5136 -2.0533 1.1367 38 1 3.1557 -3.4994 0.3214 39 1 3.9529 -1.9239 0.0977 40 1 0.0060 -2.3107 -1.4620 41 1 0.7180 -3.7832 -0.7598 42 1 0.3636 -2.3827 0.2802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220415574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:39 Heat of formation + Delta-G solvation = 19.697773 kcal Electronic energy + Delta-G solvation = -19443.895330 eV Core-core repulsion = 16845.361326 eV Total energy + Delta-G solvation = -2598.534004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70262 -35.77370 -33.60489 -32.16062 -30.41638 -27.91504 -27.26864 -26.52936 -25.74776 -24.06390 -22.86908 -20.41175 -19.67876 -17.31916 -16.52905 -15.64704 -15.04802 -14.55260 -14.09698 -13.74562 -13.63824 -13.34727 -13.11539 -12.53645 -12.42157 -11.98911 -11.82947 -11.82329 -11.64405 -11.31774 -11.26252 -11.00597 -10.92318 -10.84834 -10.73880 -10.31835 -10.25000 -10.09964 -9.91915 -9.66773 -9.41129 -8.95751 -8.45272 -7.43506 -7.01870 -6.03135 -4.07936 3.29185 3.36540 3.40309 4.39258 4.59136 5.04649 5.27137 5.30013 5.44842 5.59023 5.67785 5.72265 5.79141 5.94025 6.01528 6.06256 6.15688 6.18285 6.27515 6.28586 6.32315 6.33610 6.41783 6.46011 6.53403 6.56415 6.62804 6.76488 6.79012 6.85007 6.98336 7.07347 7.35284 7.66769 7.85339 7.89998 8.03022 8.17834 8.32976 8.69522 9.08636 9.58186 11.04078 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.009333 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.457231 B = 2999.369665 C = 3605.073900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.071 3.929 3 C -0.136 4.136 4 N -0.527 5.527 5 C 0.076 3.924 6 C 0.208 3.792 7 H 0.035 0.965 8 C -0.506 4.506 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.543 5.543 17 C 0.045 3.955 18 C 0.070 3.930 19 C 0.111 3.889 20 C -0.138 4.138 21 C -0.169 4.169 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.261 0.739 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -4.438 9.546 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.037 4.037 3 C -0.194 4.194 4 N -0.251 5.251 5 C -0.052 4.052 6 C 0.102 3.898 7 H 0.052 0.948 8 C -0.545 4.545 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.524 5.524 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 N -0.268 5.268 17 C -0.103 4.103 18 C -0.059 4.059 19 C 0.020 3.980 20 C -0.196 4.196 21 C -0.227 4.227 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.055 -4.254 9.462 10.374 hybrid contribution -0.502 0.316 -0.878 1.060 sum -0.558 -3.938 8.583 9.460 Atomic orbital electron populations 1.22900 0.97992 1.03438 1.01258 1.21697 0.92619 0.95408 0.94005 1.21741 1.01248 0.95541 1.00848 1.62677 1.52412 1.06088 1.03904 1.22473 0.93823 1.00404 0.88460 1.19426 0.97455 0.81121 0.91783 0.94754 1.20987 1.11568 1.12996 1.08933 0.92183 1.25011 0.95109 0.95881 0.97828 1.69982 1.29680 1.15296 1.37397 0.86613 0.79991 0.78369 0.83145 1.20693 1.21282 1.19793 1.62311 1.48718 1.13148 1.02645 1.22052 0.97878 0.95773 0.94625 1.22041 0.94873 0.97674 0.91329 1.20983 0.94088 0.88555 0.94342 1.21914 1.00063 1.00678 0.96978 1.22580 0.98865 1.00653 1.00615 0.92064 0.90875 0.93687 0.90992 0.93591 0.92551 0.92378 0.95059 0.91146 0.92910 0.97279 0.94376 0.90405 0.92449 0.95501 0.92833 0.92797 0.92117 0.90631 0.93345 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 7.57 37.15 0.28 -2.82 16 2 C 0.07 1.17 2.47 -67.71 -0.17 1.00 16 3 C -0.14 -2.17 9.37 37.16 0.35 -1.82 16 4 N -0.53 -10.18 4.37 -210.95 -0.92 -11.11 16 5 C 0.08 1.72 3.31 -3.77 -0.01 1.70 16 6 C 0.21 5.22 2.03 -68.80 -0.14 5.08 16 7 H 0.03 1.00 7.39 -51.93 -0.38 0.62 16 8 C -0.51 -13.63 6.88 -34.44 -0.24 -13.86 16 9 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 10 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 11 N -0.89 -25.37 12.85 55.43 0.71 -24.66 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 16 N -0.54 -11.95 4.32 -236.13 -1.02 -12.97 16 17 C 0.05 0.94 9.34 60.06 0.56 1.51 16 18 C 0.07 1.34 4.30 -3.77 -0.02 1.32 16 19 C 0.11 1.92 0.68 -131.54 -0.09 1.83 16 20 C -0.14 -1.98 8.04 37.16 0.30 -1.68 16 21 C -0.17 -2.78 6.46 37.16 0.24 -2.54 16 22 H 0.06 1.06 6.96 -51.93 -0.36 0.70 16 23 H 0.07 1.16 3.86 -51.93 -0.20 0.96 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.08 5.41 -51.93 -0.28 0.80 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.04 7.21 -51.93 -0.37 0.66 16 29 H 0.03 0.71 4.67 -51.93 -0.24 0.47 16 30 H 0.07 1.77 7.11 -51.93 -0.37 1.40 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.73 6.86 -51.92 -0.36 1.38 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.70 6.18 -51.93 -0.32 0.38 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.44 5.27 -51.93 -0.27 1.16 16 41 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.05 0.70 6.08 -51.93 -0.32 0.39 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -27.72 302.80 -7.97 -35.69 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.25 Total: 1.01 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 0.97 Total: -8.61 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.23 Total: -48.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.72 -7.97 -35.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.385 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds