Wall clock time and date at job start Mon Mar 30 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 N 1.46898 * 109.47071 * 120.00488 * 2 1 3 5 5 C 1.46960 * 111.00173 * 30.08707 * 4 2 1 6 6 C 1.53053 * 109.36045 * 183.18874 * 5 4 2 7 7 H 1.08996 * 109.48745 * 61.57210 * 6 5 4 8 8 C 1.50705 * 109.48196 * 181.63203 * 6 5 4 9 9 H 1.08007 * 119.99726 * 90.18114 * 8 6 5 10 10 C 1.37871 * 120.00140 * 270.17320 * 8 6 5 11 11 N 1.31517 * 120.00072 * 5.44449 * 10 8 6 12 12 Si 1.86799 * 120.00340 * 185.44338 * 10 8 6 13 13 H 1.48501 * 109.46982 * 90.00214 * 12 10 8 14 14 H 1.48499 * 109.47190 * 210.00418 * 12 10 8 15 15 H 1.48503 * 109.47094 * 330.00372 * 12 10 8 16 16 N 1.46957 * 109.36387 * 301.59670 * 6 5 4 17 17 C 1.46906 * 110.99492 * 183.19199 * 16 6 5 18 18 C 1.46955 * 110.87708 * 59.32918 * 16 6 5 19 19 C 1.46956 * 111.00018 * 153.88800 * 4 2 1 20 20 C 1.52997 * 109.48663 * 56.84275 * 19 4 2 21 21 C 1.53000 * 109.50797 * 296.79044 * 19 4 2 22 22 H 1.09000 * 109.47585 * 299.99455 * 1 2 3 23 23 H 1.08997 * 109.47667 * 59.99833 * 1 2 3 24 24 H 1.09007 * 109.47627 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46710 * 240.00566 * 2 1 3 26 26 H 1.09002 * 109.46940 * 188.20094 * 3 2 1 27 27 H 1.08992 * 109.47283 * 308.20146 * 3 2 1 28 28 H 1.09004 * 109.46530 * 68.20457 * 3 2 1 29 29 H 1.09000 * 109.48776 * 303.15578 * 5 4 2 30 30 H 1.08997 * 109.48473 * 63.20268 * 5 4 2 31 31 H 0.96993 * 119.99995 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47101 * 302.14326 * 17 16 6 33 33 H 1.08997 * 109.47170 * 62.14744 * 17 16 6 34 34 H 1.09003 * 109.46920 * 182.14741 * 17 16 6 35 35 H 1.08996 * 109.49353 * 60.64145 * 18 16 6 36 36 H 1.09000 * 109.48372 * 180.70933 * 18 16 6 37 37 H 1.09001 * 109.47178 * 166.94007 * 20 19 4 38 38 H 1.09004 * 109.47280 * 286.93716 * 20 19 4 39 39 H 1.08996 * 109.47464 * 46.93954 * 20 19 4 40 40 H 1.09006 * 109.46702 * 300.09676 * 21 19 4 41 41 H 1.09000 * 109.47312 * 60.09365 * 21 19 4 42 42 H 1.08994 * 109.47429 * 180.09812 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.0760 -1.7344 1.6281 6 6 1.5824 -2.3764 2.9219 7 1 1.6357 -1.6211 3.7060 8 6 0.6374 -3.4724 3.3425 9 1 0.7944 -4.4833 2.9959 10 6 -0.4273 -3.1849 4.1699 11 7 -0.6815 -1.9389 4.5056 12 14 -1.5089 -4.5649 4.8141 13 1 -0.9625 -5.0617 6.1025 14 1 -2.8880 -4.0558 5.0247 15 1 -1.5362 -5.6743 3.8273 16 7 2.9194 -2.9422 2.6943 17 6 3.4090 -3.6348 3.8937 18 6 3.8630 -1.9004 2.2656 19 6 3.3566 -1.2585 0.9718 20 6 4.3159 -0.1457 0.5448 21 6 3.2822 -2.3185 -0.1290 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1200 1.4460 -0.1466 27 1 1.5619 1.9969 -0.8075 28 1 1.8012 1.9122 0.9543 29 1 0.0967 -1.2886 1.8024 30 1 0.9964 -2.4949 0.8513 31 1 -1.4308 -1.7366 5.0873 32 1 3.4284 -2.9391 4.7326 33 1 2.7466 -4.4681 4.1280 34 1 4.4155 -4.0111 3.7105 35 1 3.9423 -1.1397 3.0422 36 1 4.8422 -2.3462 2.0914 37 1 5.3420 -0.5093 0.6002 38 1 4.0917 0.1544 -0.4789 39 1 4.1976 0.7107 1.2086 40 1 2.5981 -3.1107 0.1753 41 1 2.9216 -1.8610 -1.0502 42 1 4.2738 -2.7390 -0.2961 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220415639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:41 Heat of formation + Delta-G solvation = 19.485973 kcal Electronic energy + Delta-G solvation = -19396.267678 eV Core-core repulsion = 16797.724490 eV Total energy + Delta-G solvation = -2598.543188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58583 -35.78558 -33.61854 -32.16698 -30.84156 -27.65783 -27.18866 -26.45830 -25.92501 -24.08048 -22.59219 -20.48008 -19.67771 -17.45719 -16.47868 -15.64183 -15.15006 -14.49995 -14.04790 -13.93206 -13.67112 -13.37725 -12.85979 -12.69050 -12.32807 -12.05284 -11.88975 -11.75309 -11.52008 -11.35327 -11.10356 -11.02821 -10.91852 -10.75043 -10.69336 -10.42088 -10.28232 -10.14028 -9.97771 -9.73140 -9.39824 -8.95456 -8.45130 -7.40838 -7.02835 -6.03235 -4.07760 3.29564 3.36851 3.40203 4.39517 4.58557 5.06096 5.29728 5.32168 5.45077 5.54543 5.65270 5.71152 5.83723 5.95134 6.02884 6.06234 6.10582 6.17500 6.26377 6.27483 6.28980 6.36882 6.41443 6.48620 6.55022 6.60017 6.62419 6.73768 6.77204 6.86945 6.96252 7.07817 7.35189 7.65567 7.84911 7.90321 8.03444 8.17834 8.31735 8.68605 9.07755 9.58531 11.04433 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.009177 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.802256 B = 3050.529580 C = 3727.328183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.152 4.152 4 N -0.527 5.527 5 C 0.073 3.927 6 C 0.212 3.788 7 H 0.030 0.970 8 C -0.506 4.506 9 H 0.061 0.939 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.544 5.544 17 C 0.047 3.953 18 C 0.070 3.930 19 C 0.112 3.888 20 C -0.140 4.140 21 C -0.169 4.169 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.011 0.989 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 3.301 -7.474 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 C -0.209 4.209 4 N -0.252 5.252 5 C -0.054 4.054 6 C 0.106 3.894 7 H 0.048 0.952 8 C -0.546 4.546 9 H 0.079 0.921 10 C -0.139 4.139 11 N -0.524 5.524 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 N -0.269 5.269 17 C -0.102 4.102 18 C -0.059 4.059 19 C 0.021 3.979 20 C -0.198 4.198 21 C -0.227 4.227 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.368 3.423 -7.357 10.315 hybrid contribution -0.685 -0.661 0.427 1.043 sum 5.683 2.762 -6.931 9.378 Atomic orbital electron populations 1.22062 0.95263 1.02332 1.01335 1.21606 0.94671 0.94910 0.92434 1.22216 1.01462 0.95918 1.01335 1.62645 1.02169 1.29537 1.30875 1.22556 0.95462 0.90257 0.97149 1.19402 0.83752 0.93870 0.92423 0.95188 1.21013 1.09748 0.94848 1.28942 0.92108 1.24999 0.97519 0.95384 0.95968 1.69985 1.29200 1.17361 1.35821 0.86604 0.79685 0.82409 0.79360 1.20693 1.21335 1.19823 1.62304 1.03868 1.27375 1.33322 1.22038 0.98060 0.99037 0.91043 1.22029 0.95295 0.93368 0.95198 1.20970 0.90148 0.92408 0.94348 1.22131 0.98042 0.98846 1.00784 1.22335 1.02059 1.00459 0.97892 0.91696 0.93485 0.92033 0.94061 0.91794 0.93745 0.92175 0.89975 0.95956 0.92919 0.97040 0.90759 0.94374 0.95475 0.92422 0.93132 0.92563 0.91756 0.90535 0.93835 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 7.91 37.16 0.29 -2.26 16 2 C 0.07 1.21 2.34 -67.72 -0.16 1.05 16 3 C -0.15 -2.19 8.69 37.16 0.32 -1.87 16 4 N -0.53 -10.31 4.39 -210.95 -0.93 -11.24 16 5 C 0.07 1.67 3.28 -3.76 -0.01 1.66 16 6 C 0.21 5.32 1.94 -68.80 -0.13 5.19 16 7 H 0.03 0.88 7.55 -51.93 -0.39 0.49 16 8 C -0.51 -13.67 7.05 -34.44 -0.24 -13.91 16 9 H 0.06 1.67 7.70 -52.48 -0.40 1.26 16 10 C 0.06 1.75 5.45 -17.82 -0.10 1.66 16 11 N -0.89 -25.28 12.93 55.43 0.72 -24.56 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 N -0.54 -11.97 4.09 -236.12 -0.97 -12.94 16 17 C 0.05 0.97 9.23 60.07 0.55 1.52 16 18 C 0.07 1.35 4.29 -3.77 -0.02 1.33 16 19 C 0.11 1.97 0.68 -131.55 -0.09 1.88 16 20 C -0.14 -2.03 6.81 37.16 0.25 -1.77 16 21 C -0.17 -2.86 7.69 37.16 0.29 -2.57 16 22 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.11 6.48 -51.92 -0.34 0.77 16 25 H 0.04 0.68 5.57 -51.93 -0.29 0.39 16 26 H 0.06 0.85 4.38 -51.93 -0.23 0.63 16 27 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 2.05 6.08 -51.93 -0.32 1.74 16 30 H 0.02 0.52 6.21 -51.93 -0.32 0.20 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 1.62 7.00 -51.93 -0.36 1.25 16 34 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 39 H 0.06 0.95 7.26 -51.93 -0.38 0.58 16 40 H 0.08 1.50 5.94 -51.93 -0.31 1.19 16 41 H 0.04 0.68 6.11 -51.93 -0.32 0.37 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -27.74 303.38 -7.98 -35.72 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.31 Total: 0.45 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.96 Total: -8.10 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -1.18 Total: -48.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.74 -7.98 -35.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.210 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds