Wall clock time and date at job start Mon Mar 30 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 N 1.46898 * 109.47071 * 120.00488 * 2 1 3 5 5 C 1.46960 * 111.00173 * 30.08707 * 4 2 1 6 6 C 1.53053 * 109.36045 * 183.18874 * 5 4 2 7 7 H 1.08996 * 109.48745 * 61.57210 * 6 5 4 8 8 C 1.50705 * 109.48196 * 181.63203 * 6 5 4 9 9 H 1.08007 * 119.99726 * 90.18114 * 8 6 5 10 10 C 1.37871 * 120.00140 * 270.17320 * 8 6 5 11 11 N 1.31517 * 120.00072 * 5.44449 * 10 8 6 12 12 Si 1.86799 * 120.00340 * 185.44338 * 10 8 6 13 13 H 1.48501 * 109.46982 * 90.00214 * 12 10 8 14 14 H 1.48499 * 109.47190 * 210.00418 * 12 10 8 15 15 H 1.48503 * 109.47094 * 330.00372 * 12 10 8 16 16 N 1.46957 * 109.36387 * 301.59670 * 6 5 4 17 17 C 1.46906 * 110.99492 * 183.19199 * 16 6 5 18 18 C 1.46955 * 110.87708 * 59.32918 * 16 6 5 19 19 C 1.46956 * 111.00018 * 153.88800 * 4 2 1 20 20 C 1.52997 * 109.48663 * 56.84275 * 19 4 2 21 21 C 1.53000 * 109.50797 * 296.79044 * 19 4 2 22 22 H 1.09000 * 109.47585 * 299.99455 * 1 2 3 23 23 H 1.08997 * 109.47667 * 59.99833 * 1 2 3 24 24 H 1.09007 * 109.47627 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46710 * 240.00566 * 2 1 3 26 26 H 1.09002 * 109.46940 * 188.20094 * 3 2 1 27 27 H 1.08992 * 109.47283 * 308.20146 * 3 2 1 28 28 H 1.09004 * 109.46530 * 68.20457 * 3 2 1 29 29 H 1.09000 * 109.48776 * 303.15578 * 5 4 2 30 30 H 1.08997 * 109.48473 * 63.20268 * 5 4 2 31 31 H 0.96993 * 119.99995 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47101 * 302.14326 * 17 16 6 33 33 H 1.08997 * 109.47170 * 62.14744 * 17 16 6 34 34 H 1.09003 * 109.46920 * 182.14741 * 17 16 6 35 35 H 1.08996 * 109.49353 * 60.64145 * 18 16 6 36 36 H 1.09000 * 109.48372 * 180.70933 * 18 16 6 37 37 H 1.09001 * 109.47178 * 166.94007 * 20 19 4 38 38 H 1.09004 * 109.47280 * 286.93716 * 20 19 4 39 39 H 1.08996 * 109.47464 * 46.93954 * 20 19 4 40 40 H 1.09006 * 109.46702 * 300.09676 * 21 19 4 41 41 H 1.09000 * 109.47312 * 60.09365 * 21 19 4 42 42 H 1.08994 * 109.47429 * 180.09812 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.0760 -1.7344 1.6281 6 6 1.5824 -2.3764 2.9219 7 1 1.6357 -1.6211 3.7060 8 6 0.6374 -3.4724 3.3425 9 1 0.7944 -4.4833 2.9959 10 6 -0.4273 -3.1849 4.1699 11 7 -0.6815 -1.9389 4.5056 12 14 -1.5089 -4.5649 4.8141 13 1 -0.9625 -5.0617 6.1025 14 1 -2.8880 -4.0558 5.0247 15 1 -1.5362 -5.6743 3.8273 16 7 2.9194 -2.9422 2.6943 17 6 3.4090 -3.6348 3.8937 18 6 3.8630 -1.9004 2.2656 19 6 3.3566 -1.2585 0.9718 20 6 4.3159 -0.1457 0.5448 21 6 3.2822 -2.3185 -0.1290 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1200 1.4460 -0.1466 27 1 1.5619 1.9969 -0.8075 28 1 1.8012 1.9122 0.9543 29 1 0.0967 -1.2886 1.8024 30 1 0.9964 -2.4949 0.8513 31 1 -1.4308 -1.7366 5.0873 32 1 3.4284 -2.9391 4.7326 33 1 2.7466 -4.4681 4.1280 34 1 4.4155 -4.0111 3.7105 35 1 3.9423 -1.1397 3.0422 36 1 4.8422 -2.3462 2.0914 37 1 5.3420 -0.5093 0.6002 38 1 4.0917 0.1544 -0.4789 39 1 4.1976 0.7107 1.2086 40 1 2.5981 -3.1107 0.1753 41 1 2.9216 -1.8610 -1.0502 42 1 4.2738 -2.7390 -0.2961 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220415639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:41 Heat of formation + Delta-G solvation = 0.931767 kcal Electronic energy + Delta-G solvation = -19397.072249 eV Core-core repulsion = 16797.724490 eV Total energy + Delta-G solvation = -2599.347759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12843 -37.43574 -35.29914 -33.97446 -32.43105 -29.35746 -28.63743 -27.99272 -27.25468 -25.97670 -24.25634 -22.08842 -21.24466 -19.03165 -18.52837 -17.12924 -16.89011 -16.19406 -15.69325 -15.55568 -15.14332 -15.10238 -14.34310 -14.25146 -13.73440 -13.70971 -13.50054 -13.06393 -12.94231 -12.82505 -12.74824 -12.65073 -12.53505 -12.34629 -12.23503 -12.10284 -11.83992 -11.65769 -11.58138 -11.47274 -10.99671 -10.85265 -10.51199 -9.00329 -8.81790 -8.14061 -6.25416 1.39765 1.40558 1.51240 2.40371 3.03209 3.22841 3.47974 3.94301 4.08444 4.19640 4.25993 4.34078 4.51929 4.60795 4.65076 4.71703 4.72938 4.78794 4.81916 4.87329 4.89717 4.96449 5.00830 5.04456 5.08998 5.10892 5.18683 5.23820 5.29871 5.35204 5.41638 5.56086 5.62590 5.66162 5.74990 6.13121 6.32603 6.41904 6.61707 6.80517 6.96623 7.44754 8.93406 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.009177 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.802256 B = 3050.529580 C = 3727.328183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.144 4.144 4 N -0.542 5.542 5 C 0.095 3.905 6 C 0.219 3.781 7 H -0.020 1.020 8 C -0.516 4.516 9 H 0.053 0.947 10 C 0.016 3.984 11 N -0.919 5.919 12 Si 0.955 3.045 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.267 1.267 16 N -0.547 5.547 17 C 0.049 3.951 18 C 0.068 3.932 19 C 0.105 3.895 20 C -0.132 4.132 21 C -0.160 4.160 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.261 0.739 32 H -0.005 1.005 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 3.292 -9.244 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 C -0.201 4.201 4 N -0.267 5.267 5 C -0.033 4.033 6 C 0.112 3.888 7 H -0.002 1.002 8 C -0.555 4.555 9 H 0.072 0.928 10 C -0.184 4.184 11 N -0.558 5.558 12 Si 0.781 3.219 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.192 1.192 16 N -0.272 5.272 17 C -0.099 4.099 18 C -0.061 4.061 19 C 0.015 3.985 20 C -0.190 4.190 21 C -0.218 4.218 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.027 0.973 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.885 3.413 -9.140 12.544 hybrid contribution -1.088 -0.647 0.962 1.590 sum 6.797 2.766 -8.178 10.988 Atomic orbital electron populations 1.22009 0.95752 1.01088 1.01699 1.21757 0.94397 0.96153 0.91510 1.22158 1.02655 0.94029 1.01301 1.62593 1.02551 1.28494 1.33064 1.22026 0.94854 0.90575 0.95830 1.19146 0.85468 0.92257 0.91924 1.00213 1.21227 1.10297 0.94921 1.29101 0.92846 1.25747 0.98855 0.97530 0.96239 1.70119 1.29854 1.19256 1.36588 0.85599 0.77872 0.79606 0.78837 1.20102 1.20981 1.19153 1.62281 1.03279 1.28113 1.33502 1.22043 0.99626 0.97986 0.90250 1.22202 0.95928 0.92425 0.95552 1.21163 0.89607 0.93902 0.93803 1.22063 0.98173 0.97232 1.01490 1.22225 1.02493 0.99237 0.97884 0.94027 0.90305 0.94138 0.92722 0.90199 0.91301 0.94022 0.93071 0.96870 0.92983 0.98602 0.92417 0.90623 0.97269 0.89477 0.90859 0.90723 0.92355 0.93809 0.92413 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 7.91 71.98 0.57 -4.37 16 2 C 0.07 2.22 2.34 44.91 0.11 2.33 16 3 C -0.14 -3.80 8.69 71.98 0.63 -3.17 16 4 N -0.54 -21.15 4.39 -821.31 -3.61 -24.76 16 5 C 0.10 4.54 3.28 86.31 0.28 4.82 16 6 C 0.22 11.49 1.94 44.18 0.09 11.57 16 7 H -0.02 -1.23 7.55 -2.39 -0.02 -1.25 16 8 C -0.52 -28.90 7.05 25.60 0.18 -28.72 16 9 H 0.05 3.01 7.70 -2.91 -0.02 2.99 16 10 C 0.02 0.90 5.45 84.65 0.46 1.36 16 11 N -0.92 -54.68 12.93 21.45 0.28 -54.41 16 12 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 N -0.55 -24.28 4.09 -900.95 -3.69 -27.97 16 17 C 0.05 2.05 9.23 127.69 1.18 3.23 16 18 C 0.07 2.52 4.29 86.31 0.37 2.89 16 19 C 0.11 3.51 0.68 3.53 0.00 3.51 16 20 C -0.13 -3.33 6.81 71.98 0.49 -2.84 16 21 C -0.16 -5.01 7.69 71.98 0.55 -4.45 16 22 H 0.04 1.55 7.85 -2.39 -0.02 1.53 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.04 1.49 6.48 -2.38 -0.02 1.47 16 25 H 0.06 1.62 5.57 -2.38 -0.01 1.61 16 26 H 0.08 1.84 4.38 -2.39 -0.01 1.83 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.05 2.71 6.08 -2.39 -0.01 2.70 16 30 H 0.01 0.64 6.21 -2.39 -0.01 0.63 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.06 2.55 7.00 -2.39 -0.02 2.53 16 34 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 37 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 38 H 0.07 1.63 6.16 -2.39 -0.01 1.62 16 39 H 0.06 1.56 7.26 -2.39 -0.02 1.54 16 40 H 0.04 1.66 5.94 -2.38 -0.01 1.65 16 41 H 0.06 1.63 6.11 -2.39 -0.01 1.61 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.85 303.38 0.88 -61.97 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.97 Total: 12.71 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.91 Total: -13.84 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -7.02 Total: -107.14 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -62.85 0.88 -61.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220415639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.898 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds