Wall clock time and date at job start Mon Mar 30 2020 03:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 N 1.46907 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.46957 * 110.99669 * 66.04130 * 4 3 2 6 6 C 1.53056 * 109.36272 * 176.81142 * 5 4 3 7 7 H 1.08998 * 109.48697 * 298.43883 * 6 5 4 8 8 C 1.50692 * 109.48864 * 178.37221 * 6 5 4 9 9 H 1.08008 * 119.99875 * 239.99753 * 8 6 5 10 10 C 1.37872 * 120.00585 * 60.00213 * 8 6 5 11 11 N 1.31518 * 119.99749 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00435 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47147 * 59.99783 * 12 10 8 14 14 H 1.48505 * 109.47228 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46809 * 299.99727 * 12 10 8 16 16 N 1.46963 * 109.36215 * 58.40123 * 6 5 4 17 17 C 1.46897 * 110.99878 * 176.81273 * 16 6 5 18 18 C 1.46953 * 110.88176 * 300.68256 * 16 6 5 19 19 C 1.53001 * 109.48862 * 299.35320 * 18 16 6 20 20 C 1.52995 * 109.48896 * 179.28677 * 18 16 6 21 21 C 1.46954 * 111.00025 * 302.24651 * 4 3 2 22 22 H 1.09000 * 109.47112 * 300.00186 * 1 2 3 23 23 H 1.09001 * 109.46569 * 60.00542 * 1 2 3 24 24 H 1.09004 * 109.46517 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47112 * 239.99814 * 2 1 3 26 26 H 1.09004 * 109.47066 * 119.99432 * 2 1 3 27 27 H 1.09000 * 109.47362 * 59.99967 * 3 2 1 28 28 H 1.09001 * 109.47039 * 299.99170 * 3 2 1 29 29 H 1.09000 * 109.48960 * 56.85040 * 5 4 3 30 30 H 1.09002 * 109.49310 * 296.77988 * 5 4 3 31 31 H 0.97003 * 120.00189 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.47386 * 56.04328 * 17 16 6 33 33 H 1.08997 * 109.46977 * 176.05275 * 17 16 6 34 34 H 1.09006 * 109.47065 * 296.04985 * 17 16 6 35 35 H 1.09002 * 109.47400 * 179.89256 * 19 18 16 36 36 H 1.09001 * 109.46939 * 299.89062 * 19 18 16 37 37 H 1.08998 * 109.47316 * 59.88784 * 19 18 16 38 38 H 1.08996 * 109.47139 * 300.10916 * 20 18 16 39 39 H 1.09002 * 109.47144 * 60.10714 * 20 18 16 40 40 H 1.08999 * 109.47336 * 180.10893 * 20 18 16 41 41 H 1.09010 * 109.48735 * 303.15856 * 21 4 3 42 42 H 1.09006 * 109.49174 * 63.21596 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4426 0.0006 5 6 4.0362 0.8852 -1.2529 6 6 5.5640 0.9761 -1.2457 7 1 5.8658 2.0216 -1.1837 8 6 6.1097 0.3690 -2.5124 9 1 6.7818 -0.4749 -2.4608 10 6 5.7511 0.8908 -3.7372 11 7 4.9324 1.9181 -3.8000 12 14 6.4270 0.1378 -5.3073 13 1 6.0158 -1.2868 -5.3900 14 1 5.8926 0.8756 -6.4801 15 1 7.9094 0.2256 -5.3002 16 7 6.0902 0.2443 -0.0849 17 6 7.5592 0.2443 -0.0843 18 6 5.5630 0.8015 1.1685 19 6 5.9866 2.2663 1.2940 20 6 6.1160 0.0065 2.3530 21 6 4.0352 0.7107 1.1613 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8901 29 1 3.6422 1.4517 -2.0967 30 1 3.7343 -0.1583 -1.3422 31 1 4.6798 2.2850 -4.6617 32 1 7.9225 1.2715 -0.1150 33 1 7.9221 -0.2427 0.8208 34 1 7.9229 -0.2960 -0.9584 35 1 5.5939 2.6799 2.2228 36 1 7.0747 2.3307 1.2991 37 1 5.5933 2.8320 0.4494 38 1 5.8147 -1.0371 2.2625 39 1 7.2041 0.0714 2.3578 40 1 5.7233 0.4188 3.2824 41 1 3.6404 1.1498 2.0776 42 1 3.7333 -0.3349 1.0994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220416207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:44 Heat of formation + Delta-G solvation = 9.087495 kcal Electronic energy + Delta-G solvation = -19172.468160 eV Core-core repulsion = 16573.474059 eV Total energy + Delta-G solvation = -2598.994100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.30699 -36.04886 -33.58467 -32.13849 -31.21212 -27.98922 -26.68782 -26.23768 -25.22110 -24.36635 -22.29288 -20.93576 -19.89163 -17.21425 -16.44557 -15.42653 -14.98712 -14.54261 -14.30532 -13.95588 -13.76268 -13.54110 -13.20619 -12.61626 -12.36491 -12.15362 -11.98605 -11.68692 -11.52581 -11.24758 -11.04810 -11.01679 -10.95421 -10.81808 -10.63808 -10.52802 -10.24017 -10.21079 -9.97352 -9.81907 -9.38753 -8.85376 -8.43990 -7.37299 -7.00349 -6.01476 -4.05723 3.31962 3.36531 3.39364 4.40134 4.80064 5.00504 5.29095 5.30164 5.33627 5.47599 5.61018 5.70832 5.77782 5.89496 6.00793 6.05175 6.08598 6.15036 6.19860 6.25620 6.27381 6.32545 6.42195 6.46452 6.51957 6.55608 6.64582 6.72247 6.84238 6.91448 7.01826 7.08845 7.45567 7.67049 7.80111 7.98130 8.06101 8.22200 8.38101 8.68493 9.02242 9.59146 11.04975 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.010400 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.017628 B = 2691.574037 C = 3808.440488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.164 4.164 3 C 0.059 3.941 4 N -0.540 5.540 5 C 0.067 3.933 6 C 0.221 3.779 7 H 0.014 0.986 8 C -0.507 4.507 9 H 0.063 0.937 10 C 0.061 3.939 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 N -0.531 5.531 17 C 0.036 3.964 18 C 0.104 3.896 19 C -0.167 4.167 20 C -0.137 4.137 21 C 0.072 3.928 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.015 0.985 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -1.729 9.062 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C -0.069 4.069 4 N -0.263 5.263 5 C -0.061 4.061 6 C 0.114 3.886 7 H 0.031 0.969 8 C -0.546 4.546 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 N -0.256 5.256 17 C -0.113 4.113 18 C 0.014 3.986 19 C -0.226 4.226 20 C -0.195 4.195 21 C -0.056 4.056 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.334 -1.593 8.903 9.639 hybrid contribution 0.278 -0.388 -0.914 1.031 sum -3.055 -1.982 7.989 8.779 Atomic orbital electron populations 1.21679 0.96245 1.00952 1.01359 1.22209 0.95708 1.00023 1.02359 1.22134 0.88812 0.94502 1.01500 1.62521 1.05499 1.54113 1.04172 1.22490 0.97331 0.96593 0.89638 1.19285 0.90260 0.92483 0.86539 0.96875 1.21130 1.27974 1.15601 0.89876 0.91911 1.24941 0.95185 0.94926 0.99022 1.69873 1.34344 1.23563 1.25115 0.86602 0.79237 0.79261 0.82553 1.20298 1.21357 1.20334 1.62436 1.06713 1.54606 1.01817 1.22235 0.89219 0.99071 1.00741 1.21009 0.93993 0.92389 0.91245 1.22320 0.99968 0.98204 1.02077 1.21880 1.00725 1.00259 0.96661 1.22043 0.93766 0.96221 0.93598 0.93197 0.92840 0.93385 0.91448 0.92257 0.92198 0.91142 0.87648 0.96410 0.92866 0.96640 0.93545 0.91199 0.93821 0.93810 0.90624 0.92482 0.92574 0.93221 0.92369 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.16 -2.59 5.22 -26.73 -0.14 -2.73 16 3 C 0.06 1.02 5.38 -3.82 -0.02 1.00 16 4 N -0.54 -10.95 4.23 -234.45 -0.99 -11.94 16 5 C 0.07 1.60 4.30 -3.76 -0.02 1.58 16 6 C 0.22 5.54 1.56 -68.80 -0.11 5.44 16 7 H 0.01 0.38 6.34 -51.93 -0.33 0.05 16 8 C -0.51 -13.77 7.97 -34.45 -0.27 -14.04 16 9 H 0.06 1.71 6.46 -52.48 -0.34 1.37 16 10 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 11 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 12 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 N -0.53 -11.57 4.54 -220.47 -1.00 -12.57 16 17 C 0.04 0.72 8.39 60.06 0.50 1.22 16 18 C 0.10 1.94 0.68 -131.55 -0.09 1.85 16 19 C -0.17 -3.08 7.65 37.16 0.28 -2.80 16 20 C -0.14 -2.11 8.16 37.15 0.30 -1.81 16 21 C 0.07 1.33 3.77 -3.77 -0.01 1.32 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 26 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 29 H 0.11 2.82 6.09 -51.93 -0.32 2.50 16 30 H 0.02 0.44 6.63 -51.93 -0.34 0.10 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.02 0.31 6.80 -51.93 -0.35 -0.04 16 33 H 0.05 0.80 5.84 -51.93 -0.30 0.49 16 34 H 0.07 1.48 6.43 -51.93 -0.33 1.14 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.78 6.66 -51.93 -0.35 0.43 16 37 H 0.07 1.62 5.94 -51.93 -0.31 1.32 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.03 0.65 6.45 -51.93 -0.33 0.32 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -27.52 303.72 -8.35 -35.87 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.24 Total: 1.15 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 0.70 Total: -8.90 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -1.37 Total: -48.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.52 -8.35 -35.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220416207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.962 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds