Wall clock time and date at job start Mon Mar 30 2020 03:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 N 1.46907 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.46957 * 110.99669 * 66.04130 * 4 3 2 6 6 C 1.53056 * 109.36272 * 176.81142 * 5 4 3 7 7 H 1.08998 * 109.48697 * 298.43883 * 6 5 4 8 8 C 1.50692 * 109.48864 * 178.37221 * 6 5 4 9 9 H 1.08008 * 119.99875 * 239.99753 * 8 6 5 10 10 C 1.37872 * 120.00585 * 60.00213 * 8 6 5 11 11 N 1.31518 * 119.99749 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00435 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47147 * 59.99783 * 12 10 8 14 14 H 1.48505 * 109.47228 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46809 * 299.99727 * 12 10 8 16 16 N 1.46963 * 109.36215 * 58.40123 * 6 5 4 17 17 C 1.46897 * 110.99878 * 176.81273 * 16 6 5 18 18 C 1.46953 * 110.88176 * 300.68256 * 16 6 5 19 19 C 1.53001 * 109.48862 * 299.35320 * 18 16 6 20 20 C 1.52995 * 109.48896 * 179.28677 * 18 16 6 21 21 C 1.46954 * 111.00025 * 302.24651 * 4 3 2 22 22 H 1.09000 * 109.47112 * 300.00186 * 1 2 3 23 23 H 1.09001 * 109.46569 * 60.00542 * 1 2 3 24 24 H 1.09004 * 109.46517 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47112 * 239.99814 * 2 1 3 26 26 H 1.09004 * 109.47066 * 119.99432 * 2 1 3 27 27 H 1.09000 * 109.47362 * 59.99967 * 3 2 1 28 28 H 1.09001 * 109.47039 * 299.99170 * 3 2 1 29 29 H 1.09000 * 109.48960 * 56.85040 * 5 4 3 30 30 H 1.09002 * 109.49310 * 296.77988 * 5 4 3 31 31 H 0.97003 * 120.00189 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.47386 * 56.04328 * 17 16 6 33 33 H 1.08997 * 109.46977 * 176.05275 * 17 16 6 34 34 H 1.09006 * 109.47065 * 296.04985 * 17 16 6 35 35 H 1.09002 * 109.47400 * 179.89256 * 19 18 16 36 36 H 1.09001 * 109.46939 * 299.89062 * 19 18 16 37 37 H 1.08998 * 109.47316 * 59.88784 * 19 18 16 38 38 H 1.08996 * 109.47139 * 300.10916 * 20 18 16 39 39 H 1.09002 * 109.47144 * 60.10714 * 20 18 16 40 40 H 1.08999 * 109.47336 * 180.10893 * 20 18 16 41 41 H 1.09010 * 109.48735 * 303.15856 * 21 4 3 42 42 H 1.09006 * 109.49174 * 63.21596 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4426 0.0006 5 6 4.0362 0.8852 -1.2529 6 6 5.5640 0.9761 -1.2457 7 1 5.8658 2.0216 -1.1837 8 6 6.1097 0.3690 -2.5124 9 1 6.7818 -0.4749 -2.4608 10 6 5.7511 0.8908 -3.7372 11 7 4.9324 1.9181 -3.8000 12 14 6.4270 0.1378 -5.3073 13 1 6.0158 -1.2868 -5.3900 14 1 5.8926 0.8756 -6.4801 15 1 7.9094 0.2256 -5.3002 16 7 6.0902 0.2443 -0.0849 17 6 7.5592 0.2443 -0.0843 18 6 5.5630 0.8015 1.1685 19 6 5.9866 2.2663 1.2940 20 6 6.1160 0.0065 2.3530 21 6 4.0352 0.7107 1.1613 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8901 29 1 3.6422 1.4517 -2.0967 30 1 3.7343 -0.1583 -1.3422 31 1 4.6798 2.2850 -4.6617 32 1 7.9225 1.2715 -0.1150 33 1 7.9221 -0.2427 0.8208 34 1 7.9229 -0.2960 -0.9584 35 1 5.5939 2.6799 2.2228 36 1 7.0747 2.3307 1.2991 37 1 5.5933 2.8320 0.4494 38 1 5.8147 -1.0371 2.2625 39 1 7.2041 0.0714 2.3578 40 1 5.7233 0.4188 3.2824 41 1 3.6404 1.1498 2.0776 42 1 3.7333 -0.3349 1.0994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220416207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:43 Heat of formation + Delta-G solvation = -9.129498 kcal Electronic energy + Delta-G solvation = -19173.258108 eV Core-core repulsion = 16573.474059 eV Total energy + Delta-G solvation = -2599.784048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92605 -37.54603 -35.50273 -33.50649 -33.02428 -29.66793 -28.09666 -27.72144 -27.15709 -25.87895 -23.76267 -22.71475 -21.38406 -18.85546 -18.45892 -17.12854 -16.63024 -16.12189 -15.94991 -15.50350 -15.35108 -15.03692 -14.81218 -14.13792 -13.89545 -13.64177 -13.51761 -13.19658 -13.00438 -12.86253 -12.60559 -12.53327 -12.39325 -12.37362 -12.24182 -12.02494 -11.91753 -11.84790 -11.81927 -11.35993 -11.07634 -10.74144 -10.50870 -9.00261 -8.76070 -8.10769 -6.22649 1.40843 1.42273 1.49888 2.41248 3.11077 3.32339 3.42488 3.96973 4.02937 4.14883 4.27320 4.30839 4.43844 4.53596 4.62328 4.70752 4.73891 4.76049 4.79829 4.87056 4.91111 4.94693 5.00799 5.09507 5.12384 5.12935 5.17883 5.21663 5.26268 5.39193 5.40330 5.46794 5.58148 5.72942 5.80653 6.17264 6.31898 6.40250 6.58965 6.85789 6.94587 7.46452 8.94263 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.010400 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.017628 B = 2691.574037 C = 3808.440488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.058 3.942 4 N -0.551 5.551 5 C 0.089 3.911 6 C 0.230 3.770 7 H -0.026 1.026 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.015 3.985 11 N -0.915 5.915 12 Si 0.957 3.043 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.272 1.272 16 N -0.541 5.541 17 C 0.040 3.960 18 C 0.094 3.906 19 C -0.157 4.157 20 C -0.129 4.129 21 C 0.073 3.927 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.071 0.929 30 H -0.002 1.002 31 H 0.261 0.739 32 H 0.006 0.994 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -2.455 11.032 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C -0.070 4.070 4 N -0.274 5.274 5 C -0.040 4.040 6 C 0.122 3.878 7 H -0.008 1.008 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.184 4.184 11 N -0.555 5.555 12 Si 0.782 3.218 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.266 5.266 17 C -0.108 4.108 18 C 0.004 3.996 19 C -0.216 4.216 20 C -0.186 4.186 21 C -0.055 4.055 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.623 -2.324 10.896 11.716 hybrid contribution 0.360 -0.129 -1.467 1.516 sum -3.263 -2.453 9.430 10.275 Atomic orbital electron populations 1.21632 0.93672 1.02038 1.02252 1.22094 0.97915 0.98430 1.01030 1.22214 0.86964 0.95709 1.02096 1.62442 1.07496 1.54201 1.03246 1.21977 0.96660 0.94708 0.90625 1.18989 0.90949 0.90351 0.87495 1.00837 1.21436 1.28126 1.15555 0.91334 0.92484 1.25694 0.95426 0.95319 1.02001 1.70021 1.35194 1.24599 1.25647 0.85634 0.78764 0.78490 0.78870 1.19860 1.20906 1.19686 1.62391 1.07634 1.54287 1.02255 1.22215 0.88366 0.98584 1.01638 1.21287 0.94359 0.92967 0.90948 1.22201 0.99974 0.97724 1.01704 1.21815 1.01102 0.99761 0.95968 1.22139 0.93700 0.95995 0.93632 0.91171 0.93074 0.92239 0.94655 0.91639 0.89418 0.92641 0.91097 0.98379 0.92961 0.97592 0.90095 0.92985 0.91100 0.93650 0.94447 0.92423 0.91886 0.90336 0.89349 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.16 -4.78 5.22 30.60 0.16 -4.62 16 3 C 0.06 1.97 5.38 86.30 0.46 2.43 16 4 N -0.55 -22.40 4.23 -895.67 -3.79 -26.20 16 5 C 0.09 4.42 4.30 86.31 0.37 4.80 16 6 C 0.23 11.97 1.56 44.17 0.07 12.03 16 7 H -0.03 -1.53 6.34 -2.39 -0.02 -1.54 16 8 C -0.53 -29.56 7.97 25.60 0.20 -29.36 16 9 H 0.06 3.19 6.46 -2.91 -0.02 3.18 16 10 C 0.01 0.83 5.30 84.65 0.45 1.28 16 11 N -0.92 -53.42 11.34 21.45 0.24 -53.18 16 12 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 N -0.54 -23.63 4.54 -851.43 -3.87 -27.49 16 17 C 0.04 1.60 8.39 127.69 1.07 2.67 16 18 C 0.09 3.36 0.68 3.53 0.00 3.37 16 19 C -0.16 -5.61 7.65 71.98 0.55 -5.06 16 20 C -0.13 -3.49 8.16 71.98 0.59 -2.91 16 21 C 0.07 2.56 3.77 86.31 0.33 2.89 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.03 1.30 6.62 -2.39 -0.02 1.28 16 26 H 0.06 1.92 6.44 -2.38 -0.02 1.91 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 29 H 0.07 4.02 6.09 -2.39 -0.01 4.00 16 30 H 0.00 -0.10 6.63 -2.39 -0.02 -0.12 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.01 0.23 6.80 -2.39 -0.02 0.21 16 33 H 0.08 2.62 5.84 -2.39 -0.01 2.61 16 34 H 0.05 2.22 6.43 -2.38 -0.02 2.21 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.57 6.66 -2.39 -0.02 1.55 16 37 H 0.04 1.62 5.94 -2.39 -0.01 1.60 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.62 6.20 -2.39 -0.01 1.61 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.03 1.09 6.45 -2.38 -0.02 1.08 16 Total: -1.00 -61.94 303.72 0.55 -61.38 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.97 Total: 14.15 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.97 Total: -15.05 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -7.42 Total: -106.87 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.94 0.55 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220416207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.253 kcal (2) G-P(sol) polarization free energy of solvation -61.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds