Wall clock time and date at job start Mon Mar 30 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 N 1.46904 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.46959 * 110.99911 * 66.04256 * 4 3 2 6 6 C 1.53050 * 109.36373 * 183.18808 * 5 4 3 7 7 H 1.09001 * 109.48490 * 61.58857 * 6 5 4 8 8 C 1.50696 * 109.49039 * 181.63562 * 6 5 4 9 9 H 1.07995 * 120.00180 * 84.77243 * 8 6 5 10 10 C 1.37884 * 119.99813 * 264.77697 * 8 6 5 11 11 N 1.31507 * 120.00134 * 178.93699 * 10 8 6 12 12 Si 1.86803 * 119.99989 * 358.93482 * 10 8 6 13 13 H 1.48500 * 109.46978 * 267.89411 * 12 10 8 14 14 H 1.48504 * 109.47034 * 27.89474 * 12 10 8 15 15 H 1.48501 * 109.47205 * 147.89295 * 12 10 8 16 16 N 1.46955 * 109.38411 * 301.61340 * 6 5 4 17 17 C 1.46902 * 110.99924 * 183.17502 * 16 6 5 18 18 C 1.46957 * 110.88058 * 59.28573 * 16 6 5 19 19 C 1.53005 * 109.49210 * 180.73692 * 18 16 6 20 20 C 1.52999 * 109.49201 * 60.69228 * 18 16 6 21 21 C 1.46951 * 110.99890 * 189.84326 * 4 3 2 22 22 H 1.09000 * 109.47395 * 59.99984 * 1 2 3 23 23 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47172 * 299.99989 * 1 2 3 25 25 H 1.09003 * 109.46995 * 239.99882 * 2 1 3 26 26 H 1.09000 * 109.47395 * 120.00016 * 2 1 3 27 27 H 1.08994 * 109.47101 * 59.99967 * 3 2 1 28 28 H 1.09004 * 109.47335 * 299.99867 * 3 2 1 29 29 H 1.09002 * 109.48762 * 63.22724 * 5 4 3 30 30 H 1.08996 * 109.49011 * 303.16052 * 5 4 3 31 31 H 0.97003 * 120.00401 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.47243 * 56.04963 * 17 16 6 33 33 H 1.08999 * 109.46922 * 176.04622 * 17 16 6 34 34 H 1.08993 * 109.47248 * 296.04477 * 17 16 6 35 35 H 1.08998 * 109.47553 * 179.91198 * 19 18 16 36 36 H 1.09005 * 109.46694 * 299.91416 * 19 18 16 37 37 H 1.09000 * 109.46754 * 59.90669 * 19 18 16 38 38 H 1.09002 * 109.46835 * 300.08629 * 20 18 16 39 39 H 1.08997 * 109.47283 * 60.08334 * 20 18 16 40 40 H 1.08995 * 109.47250 * 180.09010 * 20 18 16 41 41 H 1.08992 * 109.49332 * 296.77853 * 21 4 3 42 42 H 1.09004 * 109.49363 * 56.84620 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 0.8856 -1.2547 6 6 5.5630 0.8297 -1.1836 7 1 5.8652 0.1745 -0.3666 8 6 6.1077 0.2965 -2.4836 9 1 6.2709 0.9654 -3.3155 10 6 6.3975 -1.0455 -2.6108 11 7 6.8531 -1.5145 -3.7518 12 14 6.1431 -2.1975 -1.1624 13 1 7.4034 -2.2992 -0.3836 14 1 5.0642 -1.6664 -0.2911 15 1 5.7595 -3.5426 -1.6611 16 7 6.0901 2.1812 -0.9487 17 6 7.5591 2.1807 -0.9491 18 6 5.5636 2.7382 0.3051 19 6 6.1171 4.1500 0.5087 20 6 5.9878 1.8499 1.4763 21 6 4.0357 2.7942 0.2339 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.7330 1.5189 -2.0888 30 1 3.6407 -0.1201 -1.3997 31 1 7.0567 -2.4587 -3.8415 32 1 7.9221 1.7611 -1.8873 33 1 7.9228 3.2028 -0.8434 34 1 7.9225 1.5779 -0.1169 35 1 5.7252 4.5635 1.4379 36 1 7.2052 4.1098 0.5593 37 1 5.8154 4.7824 -0.3263 38 1 5.5939 0.8440 1.3306 39 1 7.0759 1.8101 1.5267 40 1 5.5958 2.2624 2.4059 41 1 3.7335 3.4491 -0.5832 42 1 3.6418 3.1800 1.1742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220416255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:47 Heat of formation + Delta-G solvation = 6.948855 kcal Electronic energy + Delta-G solvation = -19140.929431 eV Core-core repulsion = 16541.842593 eV Total energy + Delta-G solvation = -2599.086839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43441 -36.07337 -33.51231 -32.62986 -31.50848 -28.49171 -26.86174 -26.51143 -25.28900 -24.51043 -21.98319 -20.90304 -20.00445 -17.61353 -16.89682 -15.52438 -15.22730 -15.01678 -14.21558 -14.13175 -13.93878 -13.57008 -13.11059 -13.00295 -12.50336 -12.40765 -12.09769 -11.68600 -11.66681 -11.48900 -11.34310 -11.25827 -11.03075 -10.86714 -10.69257 -10.59793 -10.45984 -10.31698 -9.92143 -9.74893 -9.52515 -9.09647 -8.59009 -7.72580 -7.16308 -6.10682 -4.10597 3.26695 3.36437 3.43352 4.39088 4.42684 4.79308 5.14430 5.24117 5.29374 5.32753 5.51731 5.57314 5.63796 5.75836 5.84883 5.90946 5.97402 6.00803 6.02645 6.07597 6.14903 6.18223 6.34504 6.36924 6.40262 6.44722 6.49331 6.52852 6.56952 6.59311 6.80206 6.85244 7.07609 7.26681 7.47350 7.67675 7.78266 8.07482 8.20495 8.68176 9.00609 9.53405 11.01726 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.012436 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.719300 B = 2251.046643 C = 3468.472567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.547 5.547 5 C 0.067 3.933 6 C 0.187 3.813 7 H 0.017 0.983 8 C -0.503 4.503 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.895 5.895 12 Si 0.864 3.136 13 H -0.279 1.279 14 H -0.255 1.255 15 H -0.288 1.288 16 N -0.524 5.524 17 C 0.035 3.965 18 C 0.102 3.898 19 C -0.136 4.136 20 C -0.169 4.169 21 C 0.076 3.924 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.012 0.988 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 6.510 9.653 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.070 4.070 4 N -0.271 5.271 5 C -0.061 4.061 6 C 0.080 3.920 7 H 0.035 0.965 8 C -0.542 4.542 9 H 0.098 0.902 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.691 3.309 13 H -0.204 1.204 14 H -0.179 1.179 15 H -0.214 1.214 16 N -0.249 5.249 17 C -0.113 4.113 18 C 0.011 3.989 19 C -0.194 4.194 20 C -0.228 4.228 21 C -0.052 4.052 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.772 6.340 9.541 13.308 hybrid contribution -0.093 -0.793 0.691 1.056 sum -6.866 5.547 10.232 13.513 Atomic orbital electron populations 1.21725 0.96141 1.01355 1.01338 1.21550 0.94722 0.96991 1.02947 1.22050 0.88584 0.96653 0.99735 1.62311 1.06155 1.21192 1.37446 1.22604 0.97406 0.98513 0.87559 1.19764 0.90114 0.85463 0.96693 0.96529 1.20884 1.42245 0.93663 0.97397 0.90213 1.24998 0.94320 0.97956 0.95485 1.69889 1.44470 1.14454 1.24491 0.87028 0.79601 0.80522 0.83746 1.20448 1.17902 1.21414 1.62426 1.07448 1.25178 1.29833 1.22235 0.88318 0.98874 1.01870 1.21058 0.93698 0.94172 0.89984 1.21851 1.00925 0.95859 1.00759 1.22332 1.00392 1.02034 0.98056 1.22016 0.94117 0.89658 0.99439 0.92974 0.92853 0.93081 0.91548 0.91533 0.91860 0.95430 0.94893 0.91300 0.92605 0.89836 0.93439 0.96942 0.93154 0.92421 0.92298 0.91215 0.93366 0.93480 0.94778 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.83 5.86 -26.73 -0.16 -1.99 16 3 C 0.06 0.90 4.96 -3.82 -0.02 0.88 16 4 N -0.55 -10.10 4.03 -234.47 -0.94 -11.04 16 5 C 0.07 1.45 4.66 -3.77 -0.02 1.44 16 6 C 0.19 4.41 1.14 -68.81 -0.08 4.33 16 7 H 0.02 0.42 3.51 -51.93 -0.18 0.24 16 8 C -0.50 -13.82 7.44 -34.44 -0.26 -14.08 16 9 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 10 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 12 Si 0.86 21.35 26.91 -169.99 -4.58 16.78 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.25 -6.12 6.55 56.52 0.37 -5.75 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 N -0.52 -11.07 4.54 -220.47 -1.00 -12.07 16 17 C 0.04 0.71 8.55 60.07 0.51 1.22 16 18 C 0.10 1.79 0.68 -131.54 -0.09 1.70 16 19 C -0.14 -1.99 8.14 37.16 0.30 -1.68 16 20 C -0.17 -2.95 7.65 37.16 0.28 -2.66 16 21 C 0.08 1.30 4.32 -3.77 -0.02 1.28 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.09 6.49 -51.93 -0.34 0.76 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 28 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.56 6.06 -51.93 -0.31 1.24 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.89 6.85 -51.93 -0.36 1.54 16 33 H 0.05 0.82 6.26 -51.93 -0.33 0.50 16 34 H 0.01 0.24 6.38 -51.93 -0.33 -0.09 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.82 6.37 -51.93 -0.33 0.49 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.39 5.94 -51.93 -0.31 1.08 16 39 H 0.05 0.82 6.48 -51.93 -0.34 0.49 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -28.91 307.20 -7.85 -36.76 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.47 Total: -0.08 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 0.74 Total: -8.91 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -1.17 Total: -49.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.58 Total: 16.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.91 -7.85 -36.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220416255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds