Wall clock time and date at job start Mon Mar 30 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 N 1.46904 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.46959 * 110.99911 * 66.04256 * 4 3 2 6 6 C 1.53050 * 109.36373 * 183.18808 * 5 4 3 7 7 H 1.09001 * 109.48490 * 61.58857 * 6 5 4 8 8 C 1.50696 * 109.49039 * 181.63562 * 6 5 4 9 9 H 1.07995 * 120.00180 * 84.77243 * 8 6 5 10 10 C 1.37884 * 119.99813 * 264.77697 * 8 6 5 11 11 N 1.31507 * 120.00134 * 178.93699 * 10 8 6 12 12 Si 1.86803 * 119.99989 * 358.93482 * 10 8 6 13 13 H 1.48500 * 109.46978 * 267.89411 * 12 10 8 14 14 H 1.48504 * 109.47034 * 27.89474 * 12 10 8 15 15 H 1.48501 * 109.47205 * 147.89295 * 12 10 8 16 16 N 1.46955 * 109.38411 * 301.61340 * 6 5 4 17 17 C 1.46902 * 110.99924 * 183.17502 * 16 6 5 18 18 C 1.46957 * 110.88058 * 59.28573 * 16 6 5 19 19 C 1.53005 * 109.49210 * 180.73692 * 18 16 6 20 20 C 1.52999 * 109.49201 * 60.69228 * 18 16 6 21 21 C 1.46951 * 110.99890 * 189.84326 * 4 3 2 22 22 H 1.09000 * 109.47395 * 59.99984 * 1 2 3 23 23 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47172 * 299.99989 * 1 2 3 25 25 H 1.09003 * 109.46995 * 239.99882 * 2 1 3 26 26 H 1.09000 * 109.47395 * 120.00016 * 2 1 3 27 27 H 1.08994 * 109.47101 * 59.99967 * 3 2 1 28 28 H 1.09004 * 109.47335 * 299.99867 * 3 2 1 29 29 H 1.09002 * 109.48762 * 63.22724 * 5 4 3 30 30 H 1.08996 * 109.49011 * 303.16052 * 5 4 3 31 31 H 0.97003 * 120.00401 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.47243 * 56.04963 * 17 16 6 33 33 H 1.08999 * 109.46922 * 176.04622 * 17 16 6 34 34 H 1.08993 * 109.47248 * 296.04477 * 17 16 6 35 35 H 1.08998 * 109.47553 * 179.91198 * 19 18 16 36 36 H 1.09005 * 109.46694 * 299.91416 * 19 18 16 37 37 H 1.09000 * 109.46754 * 59.90669 * 19 18 16 38 38 H 1.09002 * 109.46835 * 300.08629 * 20 18 16 39 39 H 1.08997 * 109.47283 * 60.08334 * 20 18 16 40 40 H 1.08995 * 109.47250 * 180.09010 * 20 18 16 41 41 H 1.08992 * 109.49332 * 296.77853 * 21 4 3 42 42 H 1.09004 * 109.49363 * 56.84620 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 0.8856 -1.2547 6 6 5.5630 0.8297 -1.1836 7 1 5.8652 0.1745 -0.3666 8 6 6.1077 0.2965 -2.4836 9 1 6.2709 0.9654 -3.3155 10 6 6.3975 -1.0455 -2.6108 11 7 6.8531 -1.5145 -3.7518 12 14 6.1431 -2.1975 -1.1624 13 1 7.4034 -2.2992 -0.3836 14 1 5.0642 -1.6664 -0.2911 15 1 5.7595 -3.5426 -1.6611 16 7 6.0901 2.1812 -0.9487 17 6 7.5591 2.1807 -0.9491 18 6 5.5636 2.7382 0.3051 19 6 6.1171 4.1500 0.5087 20 6 5.9878 1.8499 1.4763 21 6 4.0357 2.7942 0.2339 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.7330 1.5189 -2.0888 30 1 3.6407 -0.1201 -1.3997 31 1 7.0567 -2.4587 -3.8415 32 1 7.9221 1.7611 -1.8873 33 1 7.9228 3.2028 -0.8434 34 1 7.9225 1.5779 -0.1169 35 1 5.7252 4.5635 1.4379 36 1 7.2052 4.1098 0.5593 37 1 5.8154 4.7824 -0.3263 38 1 5.5939 0.8440 1.3306 39 1 7.0759 1.8101 1.5267 40 1 5.5958 2.2624 2.4059 41 1 3.7335 3.4491 -0.5832 42 1 3.6418 3.1800 1.1742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220416255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:47 Heat of formation + Delta-G solvation = -13.139525 kcal Electronic energy + Delta-G solvation = -19141.800529 eV Core-core repulsion = 16541.842593 eV Total energy + Delta-G solvation = -2599.957936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96723 -37.45055 -35.41151 -33.86900 -33.40127 -30.12297 -28.15183 -27.82091 -27.17879 -25.96738 -23.33901 -22.61465 -21.38870 -19.33539 -18.83251 -17.13260 -16.71482 -16.39635 -16.00821 -15.61607 -15.39033 -14.98732 -14.80031 -14.46349 -14.21897 -13.68315 -13.55285 -13.07752 -13.03837 -12.94043 -12.78361 -12.66215 -12.60486 -12.40752 -12.16854 -11.95605 -11.94149 -11.79278 -11.63621 -11.56009 -11.06474 -10.98321 -10.74171 -9.21258 -8.83851 -8.31862 -6.35079 1.27485 1.31825 1.44580 2.30041 2.91058 3.12828 3.33132 3.91619 4.00532 4.16456 4.22979 4.26340 4.45914 4.49021 4.50633 4.57993 4.67435 4.70581 4.77081 4.78044 4.84240 4.88957 4.92323 4.94450 5.06047 5.12291 5.14981 5.18527 5.20484 5.27792 5.32357 5.40972 5.42435 5.54920 5.63926 6.08525 6.19557 6.23670 6.50428 6.72179 6.82136 7.32557 8.84728 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.012436 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.719300 B = 2251.046643 C = 3468.472567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.550 5.550 5 C 0.080 3.920 6 C 0.194 3.806 7 H 0.009 0.991 8 C -0.499 4.499 9 H 0.034 0.966 10 C 0.023 3.977 11 N -0.942 5.942 12 Si 0.927 3.073 13 H -0.273 1.273 14 H -0.244 1.244 15 H -0.284 1.284 16 N -0.540 5.540 17 C 0.042 3.958 18 C 0.094 3.906 19 C -0.129 4.129 20 C -0.163 4.163 21 C 0.075 3.925 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.025 0.975 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.014 0.986 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 7.717 12.796 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.070 4.070 4 N -0.275 5.275 5 C -0.049 4.049 6 C 0.086 3.914 7 H 0.026 0.974 8 C -0.539 4.539 9 H 0.052 0.948 10 C -0.175 4.175 11 N -0.582 5.582 12 Si 0.752 3.248 13 H -0.199 1.199 14 H -0.168 1.168 15 H -0.210 1.210 16 N -0.264 5.264 17 C -0.106 4.106 18 C 0.004 3.996 19 C -0.187 4.187 20 C -0.222 4.222 21 C -0.053 4.053 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.129 7.573 12.701 16.875 hybrid contribution 0.323 -1.055 -0.319 1.149 sum -7.805 6.518 12.383 16.023 Atomic orbital electron populations 1.21669 0.93587 1.02240 1.02351 1.21545 0.96963 0.96279 1.01426 1.22170 0.86499 0.97351 1.00936 1.62281 1.08156 1.22294 1.34735 1.22203 0.96137 0.97745 0.88774 1.19526 0.91201 0.86755 0.93907 0.97353 1.21023 1.41708 0.93162 0.97958 0.94794 1.25732 0.94274 0.99577 0.97960 1.70024 1.46501 1.14967 1.26738 0.86022 0.79860 0.78398 0.80559 1.19889 1.16788 1.20965 1.62330 1.07840 1.23410 1.32870 1.22150 0.88087 1.00521 0.99883 1.21323 0.94311 0.95808 0.88190 1.21803 1.01105 0.93524 1.02245 1.22254 1.00332 1.00441 0.99131 1.22151 0.93700 0.88631 1.00852 0.92747 0.92126 0.91230 0.94192 0.91935 0.88970 0.95646 0.96993 0.92696 0.92475 0.93554 0.90299 0.96771 0.90052 0.92119 0.92564 0.94009 0.93439 0.90526 0.95444 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.12 -3.46 5.86 30.59 0.18 -3.28 16 3 C 0.06 1.65 4.96 86.30 0.43 2.07 16 4 N -0.55 -19.30 4.03 -895.72 -3.61 -22.91 16 5 C 0.08 3.51 4.66 86.31 0.40 3.91 16 6 C 0.19 9.29 1.14 44.17 0.05 9.34 16 7 H 0.01 0.44 3.51 -2.39 -0.01 0.43 16 8 C -0.50 -28.75 7.44 25.60 0.19 -28.56 16 9 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 10 C 0.02 1.34 5.47 84.66 0.46 1.80 16 11 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 12 Si 0.93 45.09 26.91 68.60 1.85 46.93 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 14 H -0.24 -11.36 6.55 99.48 0.65 -10.71 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 N -0.54 -22.62 4.54 -851.42 -3.87 -26.49 16 17 C 0.04 1.68 8.55 127.69 1.09 2.77 16 18 C 0.09 3.05 0.68 3.54 0.00 3.05 16 19 C -0.13 -3.27 8.14 71.98 0.59 -2.68 16 20 C -0.16 -5.16 7.65 71.98 0.55 -4.61 16 21 C 0.07 2.31 4.32 86.31 0.37 2.68 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.31 6.49 -2.39 -0.02 1.29 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 2.13 8.03 -2.39 -0.02 2.11 16 28 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 2.53 6.06 -2.39 -0.01 2.52 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.05 2.18 6.85 -2.39 -0.02 2.16 16 33 H 0.08 2.63 6.26 -2.39 -0.01 2.61 16 34 H 0.01 0.55 6.38 -2.39 -0.02 0.53 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.50 6.37 -2.38 -0.02 1.49 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.56 5.94 -2.39 -0.01 1.54 16 39 H 0.05 1.49 6.48 -2.39 -0.02 1.47 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 2.41 8.07 -2.39 -0.02 2.39 16 Total: -1.00 -65.32 307.20 0.61 -64.71 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.91 Total: 12.03 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 5.03 Total: -15.71 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -7.18 Total: -107.97 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.85 Total: 46.93 kcal Total: -65.32 0.61 -64.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220416255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.573 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds