Wall clock time and date at job start Mon Mar 30 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47244 * 2 1 4 4 H 1.09004 * 109.47361 * 53.68739 * 3 2 1 5 5 C 1.53004 * 109.47105 * 173.68551 * 3 2 1 6 6 N 1.46900 * 109.47247 * 293.68581 * 3 2 1 7 7 C 1.46959 * 111.00206 * 144.74102 * 6 3 2 8 8 H 1.09001 * 109.48995 * 63.22096 * 7 6 3 9 9 C 1.50701 * 109.48595 * 303.15688 * 7 6 3 10 10 H 1.07998 * 119.99889 * 354.33286 * 9 7 6 11 11 C 1.37878 * 119.99838 * 174.33455 * 9 7 6 12 12 N 1.31507 * 120.00135 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99902 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47190 * 59.99599 * 13 11 9 15 15 H 1.48495 * 109.47156 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46963 * 299.99778 * 13 11 9 17 17 C 1.53047 * 109.36630 * 183.18863 * 7 6 3 18 18 N 1.46956 * 109.36295 * 301.60084 * 17 7 6 19 19 C 1.46958 * 110.88580 * 59.31856 * 18 17 7 20 20 C 1.46961 * 111.00061 * 268.53785 * 6 3 2 21 21 C 1.52993 * 109.49077 * 296.78020 * 20 6 3 22 22 C 1.53008 * 109.48570 * 56.82132 * 20 6 3 23 23 H 1.09000 * 109.47411 * 184.83261 * 1 2 3 24 24 H 1.09006 * 109.46955 * 304.83335 * 1 2 3 25 25 H 1.09000 * 109.47066 * 64.83264 * 1 2 3 26 26 H 1.09004 * 109.46804 * 240.00051 * 2 1 3 27 27 H 1.09002 * 109.47347 * 120.00055 * 2 1 3 28 28 H 1.09007 * 109.46843 * 49.31330 * 5 3 2 29 29 H 1.09006 * 109.47260 * 169.30705 * 5 3 2 30 30 H 1.08992 * 109.47279 * 289.30917 * 5 3 2 31 31 H 0.97001 * 120.00151 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.49159 * 181.62519 * 17 7 6 33 33 H 1.09007 * 109.48882 * 61.56334 * 17 7 6 34 34 H 1.00903 * 110.99962 * 183.19025 * 18 17 7 35 35 H 1.08993 * 109.49144 * 180.71164 * 19 18 17 36 36 H 1.09000 * 109.50515 * 60.65664 * 19 18 17 37 37 H 1.08998 * 109.47467 * 91.63851 * 21 20 6 38 38 H 1.08998 * 109.46945 * 211.64152 * 21 20 6 39 39 H 1.08999 * 109.47047 * 331.63764 * 21 20 6 40 40 H 1.09003 * 109.46813 * 68.10693 * 22 20 6 41 41 H 1.08999 * 109.46859 * 188.10152 * 22 20 6 42 42 H 1.08996 * 109.47135 * 308.11004 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5873 1.9879 0.8281 5 6 3.5618 1.4453 0.1587 6 7 1.6787 2.0896 -1.2683 7 6 1.3589 3.5092 -1.0629 8 1 2.2430 4.0321 -0.6983 9 6 0.2483 3.6331 -0.0518 10 1 -0.2399 2.7466 0.3255 11 6 -0.1446 4.8781 0.3916 12 7 0.4495 5.9575 -0.0682 13 14 -1.5207 5.0317 1.6454 14 1 -1.1412 4.3117 2.8875 15 1 -1.7501 6.4657 1.9554 16 1 -2.7644 4.4396 1.0904 17 6 0.9120 4.1260 -2.3904 18 7 1.9820 3.9687 -3.3854 19 6 2.3019 2.5492 -3.5908 20 6 2.7487 1.9325 -2.2633 21 6 4.0119 2.6412 -1.7707 22 6 3.0439 0.4447 -2.4648 23 1 -0.3634 -1.0240 0.0866 24 1 -0.3633 0.5870 0.8436 25 1 -0.3633 0.4370 -0.9301 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0026 0.7478 -0.5537 29 1 3.9449 2.4482 -0.0302 30 1 3.8219 1.1420 1.1727 31 1 0.1733 6.8334 0.2440 32 1 0.7019 5.1858 -2.2465 33 1 0.0120 3.6209 -2.7414 34 1 1.7338 4.4132 -4.2566 35 1 3.1051 2.4595 -4.3221 36 1 1.4179 2.0260 -3.9556 37 1 4.6303 1.9369 -1.2144 38 1 4.5723 3.0206 -2.6252 39 1 3.7331 3.4713 -1.1216 40 1 2.1924 -0.0320 -2.9506 41 1 3.9293 0.3315 -3.0904 42 1 3.2200 -0.0251 -1.4972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220417112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:00 Heat of formation + Delta-G solvation = 50.183941 kcal Electronic energy + Delta-G solvation = -19806.729846 eV Core-core repulsion = 17209.517822 eV Total energy + Delta-G solvation = -2597.212025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62801 -36.94654 -35.48595 -33.76945 -32.63808 -30.73608 -28.85870 -28.11696 -27.01044 -24.43423 -23.82571 -22.39937 -21.20253 -19.13158 -18.31279 -17.37740 -16.50496 -16.15706 -16.04839 -15.20372 -15.13087 -15.07923 -14.53357 -14.47811 -14.15445 -13.65580 -13.30643 -13.11345 -12.90780 -12.81914 -12.54352 -12.47507 -12.19939 -12.17053 -12.02063 -11.94030 -11.81474 -11.43686 -11.09287 -10.99078 -10.64009 -10.52463 -10.18088 -9.20707 -8.66955 -8.09192 -6.17904 1.40650 1.41240 1.48748 2.42313 3.17569 3.38064 3.59263 4.01910 4.13653 4.35414 4.37716 4.44479 4.53244 4.66134 4.70802 4.76591 4.81071 4.82213 4.87361 4.92913 4.99153 5.03903 5.08589 5.18144 5.24662 5.26132 5.33438 5.36637 5.44419 5.54675 5.58612 5.66959 5.74613 5.81107 5.90267 6.14398 6.39538 6.51727 6.75168 6.97421 7.04225 7.50736 8.97308 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.011092 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.493513 B = 2523.699911 C = 3168.728909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C 0.079 3.921 4 H 0.052 0.948 5 C -0.213 4.213 6 N -0.520 5.520 7 C 0.230 3.770 8 H -0.021 1.021 9 C -0.514 4.514 10 H 0.061 0.939 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.950 3.050 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.086 3.914 18 N -0.697 5.697 19 C 0.074 3.926 20 C 0.101 3.899 21 C -0.176 4.176 22 C -0.148 4.148 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.259 0.741 32 H 0.061 0.939 33 H -0.005 1.005 34 H 0.336 0.664 35 H 0.088 0.912 36 H 0.021 0.979 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -10.850 -3.771 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C -0.030 4.030 4 H 0.070 0.930 5 C -0.270 4.270 6 N -0.244 5.244 7 C 0.123 3.877 8 H -0.003 1.003 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.776 3.224 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.044 4.044 18 N -0.327 5.327 19 C -0.056 4.056 20 C 0.011 3.989 21 C -0.234 4.234 22 C -0.205 4.205 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.013 0.987 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.209 -10.781 -3.487 12.471 hybrid contribution -1.135 1.116 0.528 1.677 sum 4.074 -9.665 -2.958 10.898 Atomic orbital electron populations 1.21544 0.96618 1.00032 1.00788 1.21834 0.95828 0.95048 1.02280 1.21654 0.93803 0.95464 0.92064 0.93001 1.23987 0.97489 1.03730 1.01758 1.62447 1.38267 1.15005 1.08696 1.18962 0.93406 0.83893 0.91479 1.00323 1.21439 1.18317 0.92280 1.23227 0.92042 1.25657 0.98773 0.95747 0.98338 1.70056 1.42890 0.98026 1.44833 0.85741 0.80135 0.76726 0.79810 1.19841 1.21210 1.19884 1.21839 0.89785 1.00224 0.92519 1.60587 1.44421 1.14610 1.13109 1.22074 0.99113 0.87739 0.96648 1.21183 0.89732 0.95980 0.92032 1.23432 0.98640 1.00717 1.00569 1.22356 1.01679 0.93227 1.03287 0.92191 0.95237 0.93923 0.89697 0.91616 0.88734 0.90970 0.93402 0.93171 0.92066 0.98677 0.84727 0.89384 0.96090 0.88725 0.94029 0.94817 0.92498 0.90812 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.36 71.98 0.67 -3.71 16 2 C -0.11 -3.44 5.16 30.59 0.16 -3.28 16 3 C 0.08 2.97 1.88 44.91 0.08 3.05 16 4 H 0.05 2.37 6.09 -2.39 -0.01 2.36 16 5 C -0.21 -6.81 6.91 71.98 0.50 -6.31 16 6 N -0.52 -21.34 3.79 -800.86 -3.04 -24.37 16 7 C 0.23 11.64 1.52 44.17 0.07 11.71 16 8 H -0.02 -1.20 5.92 -2.39 -0.01 -1.21 16 9 C -0.51 -28.15 7.22 25.60 0.18 -27.97 16 10 H 0.06 3.36 6.19 -2.91 -0.02 3.34 16 11 C 0.01 0.77 5.33 84.66 0.45 1.22 16 12 N -0.92 -53.64 11.77 21.45 0.25 -53.39 16 13 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 C 0.09 4.24 5.81 86.31 0.50 4.74 16 18 N -0.70 -28.04 6.54 -513.45 -3.36 -31.40 16 19 C 0.07 2.53 5.26 86.31 0.45 2.99 16 20 C 0.10 3.45 0.66 3.53 0.00 3.46 16 21 C -0.18 -6.06 6.55 71.98 0.47 -5.59 16 22 C -0.15 -3.85 6.71 71.98 0.48 -3.36 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.03 1.06 7.58 -2.38 -0.02 1.04 16 25 H 0.04 1.59 7.93 -2.39 -0.02 1.57 16 26 H 0.08 2.31 4.77 -2.38 -0.01 2.30 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.51 3.65 -2.38 -0.01 2.50 16 29 H 0.07 2.63 4.11 -9.36 -0.04 2.59 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.06 3.40 6.58 -2.39 -0.02 3.38 16 33 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 34 H 0.34 11.88 8.90 -89.69 -0.80 11.08 16 35 H 0.09 2.52 8.08 -2.39 -0.02 2.50 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 2.76 4.37 -2.51 -0.01 2.75 16 38 H 0.04 1.35 7.78 -2.39 -0.02 1.34 16 39 H 0.03 1.46 4.39 -2.39 -0.01 1.45 16 40 H 0.06 1.47 8.03 -2.39 -0.02 1.46 16 41 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 42 H 0.09 2.17 2.99 -2.39 -0.01 2.16 16 Total: -1.00 -60.91 289.85 0.11 -60.80 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.19 Total: 25.06 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.03 Total: -23.05 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -6.14 Total: -109.16 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.91 0.11 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.986 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds