Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 H 1.09001 * 109.47098 * 305.22910 * 3 2 1 5 5 C 1.52999 * 109.47133 * 185.22525 * 3 2 1 6 6 N 1.46903 * 109.47310 * 65.22776 * 3 2 1 7 7 C 1.46957 * 110.99810 * 97.53510 * 6 3 2 8 8 H 1.09000 * 109.48818 * 63.22473 * 7 6 3 9 9 C 1.50697 * 109.49253 * 303.17845 * 7 6 3 10 10 H 1.08003 * 119.99878 * 354.45554 * 9 7 6 11 11 C 1.37872 * 120.00384 * 174.45107 * 9 7 6 12 12 N 1.31517 * 119.99870 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00216 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47059 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47230 * 120.00308 * 13 11 9 16 16 H 1.48506 * 109.46820 * 239.99841 * 13 11 9 17 17 C 1.53053 * 109.38293 * 183.19825 * 7 6 3 18 18 N 1.46951 * 109.36574 * 301.59250 * 17 7 6 19 19 C 1.46958 * 110.88395 * 59.31356 * 18 17 7 20 20 C 1.46992 * 111.03216 * 221.32498 * 6 3 2 21 21 C 1.53001 * 109.48198 * 56.84980 * 20 6 3 22 22 C 1.53000 * 109.50338 * 296.80572 * 20 6 3 23 23 H 1.09005 * 109.47332 * 299.99952 * 1 2 3 24 24 H 1.09006 * 109.47316 * 59.99998 * 1 2 3 25 25 H 1.09003 * 109.46811 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47576 * 240.00020 * 2 1 3 27 27 H 1.09003 * 109.47110 * 119.99507 * 2 1 3 28 28 H 1.08999 * 109.47269 * 311.79625 * 5 3 2 29 29 H 1.09001 * 109.46824 * 71.79135 * 5 3 2 30 30 H 1.09000 * 109.47838 * 191.78627 * 5 3 2 31 31 H 0.97003 * 120.00136 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.48691 * 61.55269 * 17 7 6 33 33 H 1.09002 * 109.49091 * 181.62107 * 17 7 6 34 34 H 1.00903 * 110.99900 * 295.44950 * 18 17 7 35 35 H 1.09000 * 109.48484 * 60.64744 * 19 18 17 36 36 H 1.08997 * 109.49037 * 180.69035 * 19 18 17 37 37 H 1.09007 * 109.47184 * 172.32188 * 21 20 6 38 38 H 1.08996 * 109.47513 * 292.32234 * 21 20 6 39 39 H 1.08997 * 109.46891 * 52.32757 * 21 20 6 40 40 H 1.09000 * 109.46947 * 302.69341 * 22 20 6 41 41 H 1.08998 * 109.47042 * 62.69511 * 22 20 6 42 42 H 1.09001 * 109.47396 * 182.69334 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9826 -0.8395 5 6 3.5642 1.4446 -0.1314 6 7 1.6560 2.0977 1.2576 7 6 2.7629 2.0724 2.2238 8 1 3.6028 2.6445 1.8296 9 6 3.1920 0.6473 2.4599 10 1 2.6363 -0.1648 2.0146 11 6 4.2939 0.3799 3.2442 12 7 4.9703 1.3687 3.7868 13 14 4.8261 -1.3867 3.5363 14 1 3.9050 -2.3058 2.8209 15 1 6.2088 -1.5774 3.0295 16 1 4.7872 -1.6812 4.9913 17 6 2.2987 2.6914 3.5444 18 7 1.8448 4.0682 3.3042 19 6 0.7377 4.0939 2.3382 20 6 1.2020 3.4750 1.0177 21 6 0.0396 3.4631 0.0229 22 6 2.3556 4.3006 0.4448 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9912 0.7372 0.5796 29 1 3.8420 1.1537 -1.1445 30 1 3.9456 2.4442 0.0770 31 1 5.7458 1.1807 4.3383 32 1 1.4764 2.1035 3.9523 33 1 3.1268 2.6998 4.2531 34 1 2.6078 4.6518 2.9953 35 1 -0.1022 3.5219 2.7324 36 1 0.4275 5.1248 2.1678 37 1 -0.3853 4.4642 -0.0514 38 1 0.4020 3.1488 -0.9558 39 1 -0.7262 2.7681 0.3672 40 1 3.2008 4.2700 1.1324 41 1 2.6554 3.8869 -0.5181 42 1 2.0326 5.3332 0.3119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220417195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = 16.273725 kcal Electronic energy + Delta-G solvation = -19875.186775 eV Core-core repulsion = 17276.504293 eV Total energy + Delta-G solvation = -2598.682482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75572 -35.29365 -33.77617 -31.99018 -30.88329 -28.39352 -26.99992 -26.59730 -25.48048 -23.31560 -22.39936 -20.63531 -19.64733 -17.57128 -16.63011 -15.43543 -14.91514 -14.34489 -14.23121 -14.01632 -13.42366 -13.29178 -12.84955 -12.56795 -12.29909 -12.02260 -11.84611 -11.66004 -11.30923 -11.22825 -11.04988 -10.96701 -10.76671 -10.64312 -10.52690 -10.43639 -10.15286 -10.11012 -9.84701 -9.64966 -9.23370 -8.79275 -8.47680 -7.41528 -6.97851 -6.06129 -4.02430 3.26968 3.36346 3.39135 4.37389 4.82972 5.19361 5.29397 5.41087 5.55548 5.68663 5.71699 5.91267 5.96234 5.97567 6.00204 6.11192 6.20271 6.29118 6.34548 6.37052 6.42712 6.47414 6.56840 6.64642 6.66325 6.75336 6.83861 6.94992 7.00017 7.02653 7.09775 7.28436 7.56868 7.73348 7.84780 7.97298 8.14687 8.26174 8.40291 8.66637 9.03289 9.56092 11.02167 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.011548 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.233893 B = 2424.025499 C = 3062.821446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.097 3.903 4 H 0.050 0.950 5 C -0.186 4.186 6 N -0.512 5.512 7 C 0.181 3.819 8 H 0.018 0.982 9 C -0.499 4.499 10 H 0.079 0.921 11 C 0.058 3.942 12 N -0.892 5.892 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.066 3.934 18 N -0.698 5.698 19 C 0.076 3.924 20 C 0.067 3.933 21 C -0.135 4.135 22 C -0.179 4.179 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.327 0.673 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 2.773 -6.405 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.011 4.011 4 H 0.068 0.932 5 C -0.243 4.243 6 N -0.237 5.237 7 C 0.073 3.927 8 H 0.035 0.965 9 C -0.537 4.537 10 H 0.096 0.904 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.211 1.211 17 C -0.063 4.063 18 N -0.325 5.325 19 C -0.054 4.054 20 C -0.025 4.025 21 C -0.193 4.193 22 C -0.238 4.238 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.659 2.557 -5.486 8.999 hybrid contribution 1.630 -0.634 -1.109 2.071 sum -5.029 1.923 -6.595 8.514 Atomic orbital electron populations 1.21651 0.96942 0.99582 1.01289 1.21873 0.95100 0.96927 1.01944 1.21412 0.93836 0.94602 0.91284 0.93195 1.22753 0.97409 1.03727 1.00427 1.62550 1.38932 1.12284 1.09934 1.20037 0.87088 0.97171 0.88382 0.96506 1.21408 1.10859 0.92112 1.29336 0.90369 1.24929 0.96597 0.96826 0.95971 1.69909 1.19187 1.30539 1.33486 0.86584 0.78382 0.85331 0.78052 1.19694 1.21280 1.21091 1.22284 0.99662 0.84798 0.99513 1.60958 1.11977 1.13638 1.45943 1.21985 0.95466 0.98489 0.89495 1.21797 0.94109 0.90514 0.96100 1.21895 0.98208 1.00687 0.98470 1.22565 1.00376 0.99536 1.01350 0.91587 0.94656 0.94617 0.94089 0.89060 0.87580 0.95802 0.93461 0.93035 0.92818 0.88753 0.85618 0.91179 0.92375 0.93367 0.93118 0.91963 0.91947 0.92814 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.74 37.16 0.36 -1.86 16 2 C -0.12 -2.20 5.40 -26.73 -0.14 -2.35 16 3 C 0.10 1.82 1.39 -67.71 -0.09 1.73 16 4 H 0.05 0.89 5.04 -51.93 -0.26 0.63 16 5 C -0.19 -3.74 7.56 37.16 0.28 -3.46 16 6 N -0.51 -10.09 3.63 -204.46 -0.74 -10.83 16 7 C 0.18 4.13 0.92 -68.81 -0.06 4.07 16 8 H 0.02 0.44 4.53 -51.93 -0.24 0.21 16 9 C -0.50 -12.42 5.31 -34.44 -0.18 -12.60 16 10 H 0.08 1.96 4.17 -52.48 -0.22 1.74 16 11 C 0.06 1.51 5.33 -17.82 -0.09 1.41 16 12 N -0.89 -24.12 11.76 55.43 0.65 -23.46 16 13 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.07 1.53 5.81 -3.77 -0.02 1.51 16 18 N -0.70 -13.81 6.83 -113.64 -0.78 -14.58 16 19 C 0.08 1.34 5.49 -3.77 -0.02 1.32 16 20 C 0.07 1.15 0.66 -131.53 -0.09 1.07 16 21 C -0.13 -1.99 8.13 37.16 0.30 -1.69 16 22 C -0.18 -3.03 6.59 37.16 0.24 -2.78 16 23 H 0.07 1.15 7.54 -51.93 -0.39 0.76 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.91 4.70 -51.93 -0.24 1.66 16 28 H 0.11 2.45 5.20 -51.93 -0.27 2.18 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.99 4.87 -51.93 -0.25 0.73 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 2.43 6.57 -51.93 -0.34 2.09 16 34 H 0.33 6.37 7.34 -39.29 -0.29 6.08 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.74 6.21 -51.93 -0.32 0.42 16 39 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 40 H 0.06 1.19 4.98 -51.93 -0.26 0.93 16 41 H 0.05 0.91 6.27 -51.93 -0.33 0.58 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -25.05 292.24 -7.76 -32.81 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.76 Total: 9.79 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 0.48 Total: -13.63 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.87 Total: -48.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.05 -7.76 -32.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -25.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds