Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 H 1.09001 * 109.47098 * 305.22910 * 3 2 1 5 5 C 1.52999 * 109.47133 * 185.22525 * 3 2 1 6 6 N 1.46903 * 109.47310 * 65.22776 * 3 2 1 7 7 C 1.46957 * 110.99810 * 97.53510 * 6 3 2 8 8 H 1.09000 * 109.48818 * 63.22473 * 7 6 3 9 9 C 1.50697 * 109.49253 * 303.17845 * 7 6 3 10 10 H 1.08003 * 119.99878 * 354.45554 * 9 7 6 11 11 C 1.37872 * 120.00384 * 174.45107 * 9 7 6 12 12 N 1.31517 * 119.99870 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00216 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47059 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47230 * 120.00308 * 13 11 9 16 16 H 1.48506 * 109.46820 * 239.99841 * 13 11 9 17 17 C 1.53053 * 109.38293 * 183.19825 * 7 6 3 18 18 N 1.46951 * 109.36574 * 301.59250 * 17 7 6 19 19 C 1.46958 * 110.88395 * 59.31356 * 18 17 7 20 20 C 1.46992 * 111.03216 * 221.32498 * 6 3 2 21 21 C 1.53001 * 109.48198 * 56.84980 * 20 6 3 22 22 C 1.53000 * 109.50338 * 296.80572 * 20 6 3 23 23 H 1.09005 * 109.47332 * 299.99952 * 1 2 3 24 24 H 1.09006 * 109.47316 * 59.99998 * 1 2 3 25 25 H 1.09003 * 109.46811 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47576 * 240.00020 * 2 1 3 27 27 H 1.09003 * 109.47110 * 119.99507 * 2 1 3 28 28 H 1.08999 * 109.47269 * 311.79625 * 5 3 2 29 29 H 1.09001 * 109.46824 * 71.79135 * 5 3 2 30 30 H 1.09000 * 109.47838 * 191.78627 * 5 3 2 31 31 H 0.97003 * 120.00136 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.48691 * 61.55269 * 17 7 6 33 33 H 1.09002 * 109.49091 * 181.62107 * 17 7 6 34 34 H 1.00903 * 110.99900 * 295.44950 * 18 17 7 35 35 H 1.09000 * 109.48484 * 60.64744 * 19 18 17 36 36 H 1.08997 * 109.49037 * 180.69035 * 19 18 17 37 37 H 1.09007 * 109.47184 * 172.32188 * 21 20 6 38 38 H 1.08996 * 109.47513 * 292.32234 * 21 20 6 39 39 H 1.08997 * 109.46891 * 52.32757 * 21 20 6 40 40 H 1.09000 * 109.46947 * 302.69341 * 22 20 6 41 41 H 1.08998 * 109.47042 * 62.69511 * 22 20 6 42 42 H 1.09001 * 109.47396 * 182.69334 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9826 -0.8395 5 6 3.5642 1.4446 -0.1314 6 7 1.6560 2.0977 1.2576 7 6 2.7629 2.0724 2.2238 8 1 3.6028 2.6445 1.8296 9 6 3.1920 0.6473 2.4599 10 1 2.6363 -0.1648 2.0146 11 6 4.2939 0.3799 3.2442 12 7 4.9703 1.3687 3.7868 13 14 4.8261 -1.3867 3.5363 14 1 3.9050 -2.3058 2.8209 15 1 6.2088 -1.5774 3.0295 16 1 4.7872 -1.6812 4.9913 17 6 2.2987 2.6914 3.5444 18 7 1.8448 4.0682 3.3042 19 6 0.7377 4.0939 2.3382 20 6 1.2020 3.4750 1.0177 21 6 0.0396 3.4631 0.0229 22 6 2.3556 4.3006 0.4448 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9912 0.7372 0.5796 29 1 3.8420 1.1537 -1.1445 30 1 3.9456 2.4442 0.0770 31 1 5.7458 1.1807 4.3383 32 1 1.4764 2.1035 3.9523 33 1 3.1268 2.6998 4.2531 34 1 2.6078 4.6518 2.9953 35 1 -0.1022 3.5219 2.7324 36 1 0.4275 5.1248 2.1678 37 1 -0.3853 4.4642 -0.0514 38 1 0.4020 3.1488 -0.9558 39 1 -0.7262 2.7681 0.3672 40 1 3.2008 4.2700 1.1324 41 1 2.6554 3.8869 -0.5181 42 1 2.0326 5.3332 0.3119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220417195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = -0.058516 kcal Electronic energy + Delta-G solvation = -19875.894994 eV Core-core repulsion = 17276.504293 eV Total energy + Delta-G solvation = -2599.390701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31127 -36.83604 -35.52736 -33.63335 -32.47928 -29.97792 -28.55278 -28.02812 -27.14767 -24.95111 -23.93191 -22.34143 -21.14161 -19.16619 -18.45730 -17.00907 -16.67039 -15.99453 -15.87461 -15.53546 -14.98531 -14.75190 -14.33477 -14.20715 -13.79463 -13.53225 -13.46176 -13.07424 -12.87575 -12.81560 -12.67752 -12.47887 -12.37206 -12.21967 -12.03873 -12.01901 -11.85982 -11.60452 -11.39718 -11.33407 -10.92455 -10.50877 -10.43977 -9.05993 -8.60072 -8.04919 -6.04112 1.39561 1.44493 1.52735 2.45553 3.25419 3.31179 3.69206 4.04211 4.13861 4.24495 4.35134 4.48692 4.56607 4.65808 4.68781 4.76598 4.78240 4.86419 4.92387 4.96861 4.99913 5.05138 5.08552 5.12327 5.20291 5.27952 5.35256 5.37091 5.46048 5.49004 5.53655 5.68070 5.82438 5.91755 6.03368 6.13448 6.45375 6.60345 6.66786 6.96523 7.10762 7.56887 9.02588 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.011548 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.233893 B = 2424.025499 C = 3062.821446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.099 3.901 4 H 0.071 0.929 5 C -0.178 4.178 6 N -0.516 5.516 7 C 0.194 3.806 8 H -0.009 1.009 9 C -0.496 4.496 10 H 0.078 0.922 11 C 0.013 3.987 12 N -0.922 5.922 13 Si 0.939 3.061 14 H -0.266 1.266 15 H -0.288 1.288 16 H -0.288 1.288 17 C 0.080 3.920 18 N -0.697 5.697 19 C 0.076 3.924 20 C 0.062 3.938 21 C -0.127 4.127 22 C -0.171 4.171 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.256 0.744 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.330 0.670 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 3.145 -8.264 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.009 4.009 4 H 0.089 0.911 5 C -0.236 4.236 6 N -0.241 5.241 7 C 0.086 3.914 8 H 0.008 0.992 9 C -0.535 4.535 10 H 0.096 0.904 11 C -0.185 4.185 12 N -0.562 5.562 13 Si 0.767 3.233 14 H -0.190 1.190 15 H -0.215 1.215 16 H -0.215 1.215 17 C -0.050 4.050 18 N -0.324 5.324 19 C -0.054 4.054 20 C -0.030 4.030 21 C -0.185 4.185 22 C -0.230 4.230 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.450 2.927 -7.362 11.583 hybrid contribution 2.150 -0.708 -0.576 2.336 sum -6.300 2.219 -7.937 10.374 Atomic orbital electron populations 1.21551 0.95051 1.00499 1.01441 1.21812 0.96739 0.96164 1.01056 1.21470 0.92776 0.95266 0.91388 0.91139 1.22612 0.98500 1.01877 1.00566 1.62492 1.37172 1.14363 1.10051 1.19702 0.87222 0.95495 0.88991 0.99200 1.21730 1.10280 0.93351 1.28105 0.90419 1.25528 0.97096 0.99521 0.96363 1.70032 1.19672 1.31944 1.34596 0.85776 0.77846 0.82172 0.77503 1.19030 1.21473 1.21464 1.21908 0.97647 0.86586 0.98880 1.60875 1.12558 1.11550 1.47415 1.22099 0.94067 1.00283 0.88951 1.21951 0.95227 0.88981 0.96831 1.21824 0.96785 1.02371 0.97471 1.22462 0.99102 1.01039 1.00369 0.93127 0.92657 0.93429 0.92648 0.92175 0.90856 0.93796 0.94820 0.93492 0.94564 0.92064 0.85334 0.91815 0.89323 0.90785 0.92620 0.92075 0.94819 0.92875 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.74 71.98 0.70 -3.08 16 2 C -0.12 -4.16 5.40 30.59 0.17 -3.99 16 3 C 0.10 3.56 1.39 44.91 0.06 3.62 16 4 H 0.07 2.27 5.04 -2.39 -0.01 2.26 16 5 C -0.18 -7.09 7.56 71.98 0.54 -6.54 16 6 N -0.52 -19.86 3.63 -800.79 -2.91 -22.77 16 7 C 0.19 9.06 0.92 44.18 0.04 9.10 16 8 H -0.01 -0.49 4.53 -2.39 -0.01 -0.50 16 9 C -0.50 -25.29 5.31 25.60 0.14 -25.15 16 10 H 0.08 3.96 4.17 -2.91 -0.01 3.94 16 11 C 0.01 0.69 5.33 84.65 0.45 1.14 16 12 N -0.92 -51.75 11.76 21.45 0.25 -51.50 16 13 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 17 C 0.08 3.77 5.81 86.31 0.50 4.28 16 18 N -0.70 -27.38 6.83 -513.45 -3.51 -30.89 16 19 C 0.08 2.50 5.49 86.31 0.47 2.97 16 20 C 0.06 1.98 0.66 3.53 0.00 1.98 16 21 C -0.13 -3.22 8.13 71.98 0.58 -2.64 16 22 C -0.17 -5.41 6.59 71.98 0.47 -4.94 16 23 H 0.05 1.65 7.54 -2.38 -0.02 1.63 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 2.48 4.70 -2.39 -0.01 2.47 16 28 H 0.07 3.43 5.20 -2.39 -0.01 3.42 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 1.40 4.87 -2.39 -0.01 1.39 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 3.30 6.57 -2.39 -0.02 3.29 16 34 H 0.33 12.81 7.34 -89.69 -0.66 12.15 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.37 6.21 -2.39 -0.01 1.36 16 39 H 0.06 1.60 7.86 -2.39 -0.02 1.58 16 40 H 0.03 1.26 4.98 -2.39 -0.01 1.25 16 41 H 0.05 1.67 6.27 -2.39 -0.01 1.66 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -55.13 292.24 0.35 -54.78 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.35 Total: 28.48 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.14 Total: -23.25 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -6.16 Total: -105.15 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -55.13 0.35 -54.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.723 kcal (2) G-P(sol) polarization free energy of solvation -55.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds