Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47438 * 2 1 4 4 H 1.09001 * 109.46971 * 55.35371 * 3 2 1 5 5 C 1.53001 * 109.47102 * 175.35390 * 3 2 1 6 6 N 1.46896 * 109.47045 * 295.35220 * 3 2 1 7 7 C 1.46955 * 111.00517 * 321.04670 * 6 3 2 8 8 C 1.53045 * 109.36965 * 183.18833 * 7 6 3 9 9 C 1.52994 * 109.49284 * 181.63037 * 8 7 6 10 10 C 1.53001 * 109.48831 * 61.56285 * 8 7 6 11 11 N 1.46957 * 109.36463 * 301.59862 * 8 7 6 12 12 C 1.46963 * 110.87846 * 59.31820 * 11 8 7 13 13 C 1.46957 * 111.00003 * 84.84631 * 6 3 2 14 14 H 1.08996 * 109.50734 * 296.78809 * 13 6 3 15 15 C 1.50707 * 109.48668 * 56.84287 * 13 6 3 16 16 H 1.07996 * 120.00059 * 30.14667 * 15 13 6 17 17 C 1.37880 * 119.99663 * 210.14479 * 15 13 6 18 18 N 1.31509 * 120.00409 * 351.60597 * 17 15 13 19 19 Si 1.86802 * 119.99667 * 171.59956 * 17 15 13 20 20 H 1.48501 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47478 * 240.00241 * 19 17 15 22 22 H 1.48506 * 109.46900 * 120.00532 * 19 17 15 23 23 H 1.09006 * 109.46858 * 315.53840 * 1 2 3 24 24 H 1.08995 * 109.47592 * 75.53772 * 1 2 3 25 25 H 1.08997 * 109.47674 * 195.54198 * 1 2 3 26 26 H 1.09006 * 109.46833 * 240.00411 * 2 1 3 27 27 H 1.09000 * 109.47282 * 120.00720 * 2 1 3 28 28 H 1.08998 * 109.46966 * 304.23352 * 5 3 2 29 29 H 1.08994 * 109.47364 * 64.23927 * 5 3 2 30 30 H 1.09000 * 109.46801 * 184.23859 * 5 3 2 31 31 H 1.09002 * 109.48926 * 63.21907 * 7 6 3 32 32 H 1.09002 * 109.50361 * 303.16832 * 7 6 3 33 33 H 1.08997 * 109.47733 * 179.89262 * 9 8 7 34 34 H 1.08999 * 109.47460 * 299.89315 * 9 8 7 35 35 H 1.09003 * 109.46765 * 59.88977 * 9 8 7 36 36 H 1.08999 * 109.47386 * 300.11601 * 10 8 7 37 37 H 1.09007 * 109.46774 * 60.11097 * 10 8 7 38 38 H 1.08996 * 109.47088 * 180.10851 * 10 8 7 39 39 H 1.00894 * 111.00147 * 183.18216 * 11 8 7 40 40 H 1.09005 * 109.48858 * 180.71195 * 12 11 8 41 41 H 1.08999 * 109.50894 * 60.66130 * 12 11 8 42 42 H 0.97006 * 119.99753 * 3.69700 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6103 1.9798 0.8455 5 6 3.5655 1.4440 0.1168 6 7 1.6442 2.1018 -1.2516 7 6 1.7582 1.1808 -2.3910 8 6 1.4143 1.9264 -3.6826 9 6 1.4926 0.9600 -4.8662 10 6 2.4078 3.0711 -3.8912 11 7 0.0529 2.4707 -3.5834 12 6 -0.0611 3.3918 -2.4439 13 6 0.2827 2.6462 -1.1523 14 1 -0.4253 1.8309 -1.0036 15 6 0.2057 3.5981 0.0135 16 1 1.0797 4.1575 0.3126 17 6 -0.9808 3.7548 0.6982 18 7 -2.0831 3.2046 0.2382 19 14 -1.0223 4.7484 2.2795 20 1 0.3397 5.2585 2.5795 21 1 -1.4846 3.8844 3.3952 22 1 -1.9552 5.8930 2.1205 23 1 -0.3633 0.7335 0.7199 24 1 -0.3634 0.2566 -0.9950 25 1 -0.3634 -0.9900 0.2753 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.8623 0.8893 1.0070 29 1 3.9980 0.9729 -0.7658 30 1 3.9231 2.4709 0.1926 31 1 1.0671 0.3486 -2.2566 32 1 2.7779 0.8006 -2.4511 33 1 1.2458 1.4908 -5.7857 34 1 2.5024 0.5564 -4.9396 35 1 0.7853 0.1443 -4.7165 36 1 2.3523 3.7587 -3.0472 37 1 3.4175 2.6670 -3.9647 38 1 2.1615 3.6031 -4.8101 39 1 -0.2190 2.9237 -4.4430 40 1 -1.0810 3.7717 -2.3840 41 1 0.6296 4.2242 -2.5782 42 1 -2.0519 2.6443 -0.5530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220417921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = 2.281645 kcal Electronic energy + Delta-G solvation = -19631.052807 eV Core-core repulsion = 17031.763583 eV Total energy + Delta-G solvation = -2599.289224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45524 -36.16350 -33.65321 -31.23844 -30.75985 -29.46386 -27.01207 -26.84741 -24.44802 -23.74929 -22.84754 -20.64061 -19.19411 -18.15612 -16.70280 -15.44822 -15.01524 -14.54428 -14.14857 -13.80582 -13.62849 -13.35838 -12.99995 -12.79651 -12.60455 -12.16094 -11.81573 -11.57473 -11.45824 -11.26587 -11.17431 -10.98066 -10.83021 -10.74767 -10.61619 -10.35239 -10.24807 -10.12440 -9.85973 -9.79854 -9.43037 -8.62651 -8.24313 -7.71106 -6.95611 -6.33830 -4.04157 3.44330 3.45921 3.60761 4.50226 4.82606 4.89806 5.28643 5.37803 5.50686 5.57007 5.64239 5.76809 5.83350 5.90664 6.01132 6.11344 6.13074 6.16364 6.23735 6.29431 6.35289 6.39568 6.40065 6.45045 6.51223 6.56822 6.67009 6.71140 6.82260 6.91197 6.96860 7.10611 7.26648 7.48010 7.71967 8.00283 8.10952 8.20461 8.50474 8.68148 8.93847 9.67538 11.03408 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.010318 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.601977 B = 2713.055664 C = 3178.647148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.082 3.918 4 H 0.101 0.899 5 C -0.134 4.134 6 N -0.522 5.522 7 C 0.065 3.935 8 C 0.110 3.890 9 C -0.136 4.136 10 C -0.167 4.167 11 N -0.686 5.686 12 C 0.067 3.933 13 C 0.187 3.813 14 H 0.040 0.960 15 C -0.583 4.583 16 H 0.054 0.946 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 1.067 2.933 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.289 1.289 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.322 0.678 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -4.256 -4.904 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C -0.027 4.027 4 H 0.119 0.881 5 C -0.192 4.192 6 N -0.246 5.246 7 C -0.064 4.064 8 C 0.019 3.981 9 C -0.194 4.194 10 C -0.226 4.226 11 N -0.316 5.316 12 C -0.062 4.062 13 C 0.080 3.920 14 H 0.058 0.942 15 C -0.622 4.622 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.545 5.545 19 Si 0.897 3.103 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.216 1.216 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.506 -3.822 -3.444 8.294 hybrid contribution 0.983 -0.404 -1.523 1.857 sum 7.489 -4.226 -4.967 9.931 Atomic orbital electron populations 1.22030 0.95441 1.00394 1.03140 1.22190 0.96779 0.99068 1.00588 1.21687 0.94000 0.91718 0.95264 0.88111 1.21760 0.96585 1.01208 0.99648 1.62344 1.28903 1.32286 1.01114 1.22129 0.98918 0.94533 0.90822 1.20910 0.88391 0.94098 0.94721 1.21792 1.01111 0.99362 0.97132 1.22376 0.99119 0.99903 1.01206 1.60935 1.23136 1.40606 1.06967 1.22386 0.99729 0.93629 0.90458 1.19835 0.85065 0.94912 0.92155 0.94244 1.21859 0.99126 1.26591 1.14665 0.92787 1.25723 0.92107 0.98381 1.02037 1.70735 1.28073 1.30306 1.25356 0.83565 0.75198 0.76088 0.75498 1.21494 1.21451 1.21563 0.91120 0.91925 0.94672 0.92782 0.93055 0.93684 0.93968 0.92660 0.94450 0.92515 0.93170 0.92798 0.92321 0.90553 0.93340 0.94399 0.86143 0.91751 0.95712 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.10 37.15 0.30 -2.75 16 2 C -0.15 -2.65 4.87 -26.73 -0.13 -2.78 16 3 C 0.08 1.61 2.35 -67.71 -0.16 1.45 16 4 H 0.10 2.29 6.28 -51.93 -0.33 1.96 16 5 C -0.13 -2.24 9.41 37.16 0.35 -1.89 16 6 N -0.52 -10.82 3.68 -219.95 -0.81 -11.63 16 7 C 0.06 1.19 2.94 -3.77 -0.01 1.18 16 8 C 0.11 1.89 0.94 -131.55 -0.12 1.76 16 9 C -0.14 -1.91 8.75 37.15 0.32 -1.59 16 10 C -0.17 -2.77 8.11 37.16 0.30 -2.46 16 11 N -0.69 -13.06 6.34 -99.83 -0.63 -13.70 16 12 C 0.07 1.51 5.57 -3.76 -0.02 1.48 16 13 C 0.19 4.41 1.16 -68.81 -0.08 4.33 16 14 H 0.04 1.01 2.90 -51.93 -0.15 0.86 16 15 C -0.58 -15.35 6.68 -34.44 -0.23 -15.58 16 16 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 17 C 0.02 0.62 5.44 -17.82 -0.10 0.53 16 18 N -0.91 -26.01 13.62 55.43 0.75 -25.25 16 19 Si 1.07 24.63 29.91 -169.99 -5.08 19.54 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.07 1.62 7.68 -51.93 -0.40 1.23 16 24 H 0.06 1.35 4.84 -51.93 -0.25 1.10 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.92 6.14 -51.93 -0.32 0.60 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.66 7.07 -51.93 -0.37 0.29 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.73 5.01 -51.93 -0.26 0.47 16 32 H 0.06 0.97 7.01 -51.93 -0.36 0.61 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.48 5.94 -51.93 -0.31 1.17 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.32 5.52 8.81 -39.29 -0.35 5.17 16 40 H 0.06 1.58 7.99 -51.93 -0.42 1.17 16 41 H 0.02 0.57 6.35 -51.93 -0.33 0.24 16 42 H 0.27 7.88 6.57 -40.82 -0.27 7.61 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -27.01 302.89 -7.90 -34.91 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.12 Total: 7.87 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 0.42 Total: -16.31 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.69 Total: -50.58 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.01 -7.90 -34.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds