Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47438 * 2 1 4 4 H 1.09001 * 109.46971 * 55.35371 * 3 2 1 5 5 C 1.53001 * 109.47102 * 175.35390 * 3 2 1 6 6 N 1.46896 * 109.47045 * 295.35220 * 3 2 1 7 7 C 1.46955 * 111.00517 * 321.04670 * 6 3 2 8 8 C 1.53045 * 109.36965 * 183.18833 * 7 6 3 9 9 C 1.52994 * 109.49284 * 181.63037 * 8 7 6 10 10 C 1.53001 * 109.48831 * 61.56285 * 8 7 6 11 11 N 1.46957 * 109.36463 * 301.59862 * 8 7 6 12 12 C 1.46963 * 110.87846 * 59.31820 * 11 8 7 13 13 C 1.46957 * 111.00003 * 84.84631 * 6 3 2 14 14 H 1.08996 * 109.50734 * 296.78809 * 13 6 3 15 15 C 1.50707 * 109.48668 * 56.84287 * 13 6 3 16 16 H 1.07996 * 120.00059 * 30.14667 * 15 13 6 17 17 C 1.37880 * 119.99663 * 210.14479 * 15 13 6 18 18 N 1.31509 * 120.00409 * 351.60597 * 17 15 13 19 19 Si 1.86802 * 119.99667 * 171.59956 * 17 15 13 20 20 H 1.48501 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47478 * 240.00241 * 19 17 15 22 22 H 1.48506 * 109.46900 * 120.00532 * 19 17 15 23 23 H 1.09006 * 109.46858 * 315.53840 * 1 2 3 24 24 H 1.08995 * 109.47592 * 75.53772 * 1 2 3 25 25 H 1.08997 * 109.47674 * 195.54198 * 1 2 3 26 26 H 1.09006 * 109.46833 * 240.00411 * 2 1 3 27 27 H 1.09000 * 109.47282 * 120.00720 * 2 1 3 28 28 H 1.08998 * 109.46966 * 304.23352 * 5 3 2 29 29 H 1.08994 * 109.47364 * 64.23927 * 5 3 2 30 30 H 1.09000 * 109.46801 * 184.23859 * 5 3 2 31 31 H 1.09002 * 109.48926 * 63.21907 * 7 6 3 32 32 H 1.09002 * 109.50361 * 303.16832 * 7 6 3 33 33 H 1.08997 * 109.47733 * 179.89262 * 9 8 7 34 34 H 1.08999 * 109.47460 * 299.89315 * 9 8 7 35 35 H 1.09003 * 109.46765 * 59.88977 * 9 8 7 36 36 H 1.08999 * 109.47386 * 300.11601 * 10 8 7 37 37 H 1.09007 * 109.46774 * 60.11097 * 10 8 7 38 38 H 1.08996 * 109.47088 * 180.10851 * 10 8 7 39 39 H 1.00894 * 111.00147 * 183.18216 * 11 8 7 40 40 H 1.09005 * 109.48858 * 180.71195 * 12 11 8 41 41 H 1.08999 * 109.50894 * 60.66130 * 12 11 8 42 42 H 0.97006 * 119.99753 * 3.69700 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6103 1.9798 0.8455 5 6 3.5655 1.4440 0.1168 6 7 1.6442 2.1018 -1.2516 7 6 1.7582 1.1808 -2.3910 8 6 1.4143 1.9264 -3.6826 9 6 1.4926 0.9600 -4.8662 10 6 2.4078 3.0711 -3.8912 11 7 0.0529 2.4707 -3.5834 12 6 -0.0611 3.3918 -2.4439 13 6 0.2827 2.6462 -1.1523 14 1 -0.4253 1.8309 -1.0036 15 6 0.2057 3.5981 0.0135 16 1 1.0797 4.1575 0.3126 17 6 -0.9808 3.7548 0.6982 18 7 -2.0831 3.2046 0.2382 19 14 -1.0223 4.7484 2.2795 20 1 0.3397 5.2585 2.5795 21 1 -1.4846 3.8844 3.3952 22 1 -1.9552 5.8930 2.1205 23 1 -0.3633 0.7335 0.7199 24 1 -0.3634 0.2566 -0.9950 25 1 -0.3634 -0.9900 0.2753 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.8623 0.8893 1.0070 29 1 3.9980 0.9729 -0.7658 30 1 3.9231 2.4709 0.1926 31 1 1.0671 0.3486 -2.2566 32 1 2.7779 0.8006 -2.4511 33 1 1.2458 1.4908 -5.7857 34 1 2.5024 0.5564 -4.9396 35 1 0.7853 0.1443 -4.7165 36 1 2.3523 3.7587 -3.0472 37 1 3.4175 2.6670 -3.9647 38 1 2.1615 3.6031 -4.8101 39 1 -0.2190 2.9237 -4.4430 40 1 -1.0810 3.7717 -2.3840 41 1 0.6296 4.2242 -2.5782 42 1 -2.0519 2.6443 -0.5530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220417921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = -15.713639 kcal Electronic energy + Delta-G solvation = -19631.833141 eV Core-core repulsion = 17031.763583 eV Total energy + Delta-G solvation = -2600.069558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04325 -37.66059 -35.56021 -32.96840 -32.35276 -30.96881 -28.69973 -28.11112 -26.00709 -25.66586 -24.41077 -22.33744 -20.73950 -19.82708 -18.60329 -17.01045 -16.59979 -16.21030 -15.74284 -15.60544 -15.27552 -14.86445 -14.45454 -14.25567 -14.16169 -13.76391 -13.24120 -13.08859 -12.95073 -12.80196 -12.72239 -12.60976 -12.50552 -12.29791 -12.17767 -11.96008 -11.88207 -11.74803 -11.49778 -11.37531 -11.03675 -10.62608 -10.27269 -9.29290 -8.68709 -8.46015 -6.19801 1.52872 1.59686 1.76601 2.57509 3.17764 3.35538 3.44556 3.93790 4.00816 4.17368 4.24349 4.30360 4.31717 4.63334 4.65252 4.67314 4.74014 4.75900 4.82369 4.83504 4.88061 4.94512 4.95218 4.96849 5.05300 5.11438 5.12842 5.17933 5.25854 5.37240 5.44866 5.57187 5.58639 5.65052 6.01975 6.18060 6.29097 6.53121 6.66409 6.74005 6.94911 7.58206 8.86150 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.010318 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.601977 B = 2713.055664 C = 3178.647148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.076 3.924 4 H 0.062 0.938 5 C -0.123 4.123 6 N -0.527 5.527 7 C 0.064 3.936 8 C 0.105 3.895 9 C -0.127 4.127 10 C -0.158 4.158 11 N -0.688 5.688 12 C 0.081 3.919 13 C 0.191 3.809 14 H 0.021 0.979 15 C -0.581 4.581 16 H 0.036 0.964 17 C -0.021 4.021 18 N -0.932 5.932 19 Si 1.107 2.893 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.285 1.285 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.335 0.665 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -5.436 -5.754 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C -0.033 4.033 4 H 0.080 0.920 5 C -0.181 4.181 6 N -0.251 5.251 7 C -0.064 4.064 8 C 0.014 3.986 9 C -0.185 4.185 10 C -0.217 4.217 11 N -0.319 5.319 12 C -0.048 4.048 13 C 0.084 3.916 14 H 0.038 0.962 15 C -0.620 4.620 16 H 0.054 0.946 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.932 3.068 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.211 1.211 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.153 0.847 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.528 -5.009 -4.314 10.790 hybrid contribution 0.406 -0.067 -1.296 1.360 sum 8.933 -5.076 -5.610 11.706 Atomic orbital electron populations 1.21861 0.97192 1.00157 1.00610 1.22119 0.94925 0.98253 1.02412 1.21711 0.96061 0.92128 0.93368 0.92026 1.21656 0.93800 1.01178 1.01487 1.62312 1.26602 1.33618 1.02545 1.22239 0.99889 0.93876 0.90402 1.21110 0.87095 0.94873 0.95565 1.21723 1.02467 0.98391 0.95946 1.22259 1.00006 0.99028 1.00425 1.60835 1.25159 1.39520 1.06427 1.21977 0.97395 0.93725 0.91753 1.19610 0.86434 0.93916 0.91645 0.96163 1.22020 0.98131 1.26358 1.15479 0.94558 1.26858 0.91947 0.98966 1.04324 1.70846 1.28827 1.31813 1.25534 0.83039 0.75852 0.75191 0.72762 1.20160 1.20835 1.21105 0.95073 0.94052 0.92575 0.90988 0.90922 0.91468 0.92335 0.93730 0.95443 0.90247 0.91681 0.90517 0.92771 0.93932 0.91433 0.92941 0.84718 0.94892 0.96821 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.10 71.98 0.58 -5.08 16 2 C -0.14 -4.74 4.87 30.59 0.15 -4.59 16 3 C 0.08 2.94 2.35 44.92 0.11 3.04 16 4 H 0.06 2.86 6.28 -2.39 -0.01 2.85 16 5 C -0.12 -3.82 9.41 71.98 0.68 -3.15 16 6 N -0.53 -21.72 3.68 -849.78 -3.13 -24.85 16 7 C 0.06 2.24 2.94 86.31 0.25 2.50 16 8 C 0.10 3.36 0.94 3.53 0.00 3.36 16 9 C -0.13 -3.12 8.75 71.98 0.63 -2.49 16 10 C -0.16 -4.87 8.11 71.98 0.58 -4.29 16 11 N -0.69 -25.94 6.34 -469.76 -2.98 -28.92 16 12 C 0.08 3.78 5.57 86.31 0.48 4.26 16 13 C 0.19 9.33 1.16 44.18 0.05 9.38 16 14 H 0.02 1.11 2.90 -2.39 -0.01 1.10 16 15 C -0.58 -31.76 6.68 25.60 0.17 -31.59 16 16 H 0.04 2.07 7.83 -2.91 -0.02 2.05 16 17 C -0.02 -1.18 5.44 84.66 0.46 -0.72 16 18 N -0.93 -55.57 13.62 21.45 0.29 -55.28 16 19 Si 1.11 50.76 29.91 68.60 2.05 52.81 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H 0.03 1.47 7.68 -2.38 -0.02 1.45 16 24 H 0.04 1.82 4.84 -2.39 -0.01 1.81 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 2.24 6.14 -2.38 -0.01 2.23 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.03 5.01 -2.39 -0.01 1.01 16 32 H 0.08 2.42 7.01 -2.39 -0.02 2.41 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.60 5.94 -2.39 -0.01 1.59 16 37 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.34 11.17 8.81 -89.70 -0.79 10.38 16 40 H 0.03 1.70 7.99 -2.38 -0.02 1.68 16 41 H 0.01 0.65 6.35 -2.39 -0.02 0.64 16 42 H 0.26 15.80 6.57 -92.70 -0.61 15.19 16 Total: -1.00 -60.82 302.89 0.75 -60.07 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.36 Total: 25.54 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 4.15 Total: -29.37 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -5.82 Total: -109.05 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -60.82 0.75 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.358 kcal (2) G-P(sol) polarization free energy of solvation -60.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds