Wall clock time and date at job start Mon Mar 30 2020 03:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 H 1.09002 * 109.47083 * 305.00518 * 3 2 1 5 5 C 1.52996 * 109.47476 * 185.00090 * 3 2 1 6 6 N 1.46901 * 109.47037 * 65.00050 * 3 2 1 7 7 C 1.46952 * 111.00231 * 56.20430 * 6 3 2 8 8 C 1.53051 * 109.36760 * 183.19359 * 7 6 3 9 9 C 1.52990 * 109.49328 * 61.55862 * 8 7 6 10 10 C 1.52999 * 109.49157 * 181.63366 * 8 7 6 11 11 N 1.46961 * 109.35933 * 301.59043 * 8 7 6 12 12 C 1.46961 * 110.87648 * 59.32370 * 11 8 7 13 13 C 1.46955 * 111.00136 * 180.02562 * 6 3 2 14 14 H 1.09003 * 109.48837 * 296.79967 * 13 6 3 15 15 C 1.50702 * 109.48829 * 56.84208 * 13 6 3 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 13 6 17 17 C 1.37884 * 119.99942 * 179.72199 * 15 13 6 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 H 1.09005 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46907 * 299.99731 * 1 2 3 25 25 H 1.08996 * 109.47275 * 60.00249 * 1 2 3 26 26 H 1.08991 * 109.47336 * 240.00319 * 2 1 3 27 27 H 1.08996 * 109.47275 * 119.99751 * 2 1 3 28 28 H 1.09001 * 109.46848 * 300.00029 * 5 3 2 29 29 H 1.08998 * 109.47317 * 60.00193 * 5 3 2 30 30 H 1.08997 * 109.47493 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.48906 * 303.15334 * 7 6 3 32 32 H 1.09000 * 109.49300 * 63.21837 * 7 6 3 33 33 H 1.09000 * 109.47029 * 60.00527 * 9 8 7 34 34 H 1.08996 * 109.47272 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47423 * 300.00697 * 9 8 7 36 36 H 1.08997 * 109.47296 * 59.99013 * 10 8 7 37 37 H 1.08994 * 109.47278 * 179.97438 * 10 8 7 38 38 H 1.09007 * 109.46417 * 299.99759 * 10 8 7 39 39 H 1.00893 * 111.00625 * 295.46250 * 11 8 7 40 40 H 1.08998 * 109.48731 * 180.70615 * 12 11 8 41 41 H 1.09007 * 109.48579 * 60.64653 * 12 11 8 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 2.1451 1.3478 2.4176 8 6 1.6530 2.0189 3.7021 9 6 0.1236 2.0001 3.7344 10 6 2.1990 1.2625 4.9148 11 7 2.1271 3.4095 3.7377 12 6 1.6335 4.1610 2.5753 13 6 2.1249 3.4900 1.2906 14 1 3.2146 3.5038 1.2670 15 6 1.5867 4.2348 0.0961 16 1 0.9556 3.7265 -0.6179 17 6 1.8949 5.5670 -0.0818 18 7 2.6631 6.1860 0.7878 19 14 1.2215 6.4922 -1.5582 20 1 0.3899 5.5761 -2.3793 21 1 0.3899 7.6307 -1.0917 22 1 2.3490 7.0056 -2.3771 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9994 0.9054 0.7161 29 1 3.8532 0.9572 -1.0571 30 1 3.9281 2.4721 -0.1262 31 1 1.7704 0.3251 2.3753 32 1 3.2350 1.3369 2.4075 33 1 -0.2278 0.9687 3.7061 34 1 -0.2265 2.4777 4.6494 35 1 -0.2648 2.5400 2.8708 36 1 3.2886 1.2771 4.8917 37 1 1.8488 1.7409 5.8293 38 1 1.8488 0.2306 4.8870 39 1 3.1339 3.4471 3.7914 40 1 2.0080 5.1837 2.6177 41 1 0.5435 4.1719 2.5855 42 1 2.8802 7.1231 0.6624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220417980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:53 Heat of formation + Delta-G solvation = -0.547117 kcal Electronic energy + Delta-G solvation = -19432.106182 eV Core-core repulsion = 16832.694293 eV Total energy + Delta-G solvation = -2599.411888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33013 -35.94210 -33.63578 -31.52791 -30.76113 -28.77477 -27.37935 -26.78866 -24.34559 -23.86341 -22.98524 -20.49762 -19.26362 -18.03449 -16.20666 -15.58098 -14.83835 -14.58495 -13.96539 -13.94298 -13.71080 -13.21978 -13.03099 -12.83278 -12.55508 -11.83902 -11.77556 -11.61428 -11.54628 -11.31308 -11.07936 -10.95819 -10.88701 -10.69509 -10.61230 -10.32025 -10.25753 -10.06506 -9.99817 -9.88000 -9.44332 -9.09061 -8.49567 -7.41152 -7.01058 -6.05347 -4.07386 3.27673 3.36364 3.40156 4.38702 4.84071 5.10078 5.28741 5.38216 5.50923 5.60432 5.66817 5.73250 5.82753 5.95978 6.05360 6.06910 6.12506 6.18297 6.29328 6.35227 6.37226 6.40489 6.46286 6.50664 6.52609 6.71046 6.74822 6.84914 6.86557 6.97920 7.02599 7.13715 7.35772 7.69050 7.80008 7.99086 8.16443 8.24559 8.43221 8.62305 8.99333 9.56850 11.01813 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.010464 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.198943 B = 2675.164957 C = 3409.451925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.089 3.911 4 H 0.090 0.910 5 C -0.180 4.180 6 N -0.517 5.517 7 C 0.026 3.974 8 C 0.110 3.890 9 C -0.125 4.125 10 C -0.136 4.136 11 N -0.688 5.688 12 C 0.064 3.936 13 C 0.186 3.814 14 H 0.001 0.999 15 C -0.499 4.499 16 H 0.063 0.937 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.286 1.286 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.326 0.674 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -9.633 2.714 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.020 4.020 4 H 0.108 0.892 5 C -0.238 4.238 6 N -0.241 5.241 7 C -0.104 4.104 8 C 0.018 3.982 9 C -0.182 4.182 10 C -0.194 4.194 11 N -0.317 5.317 12 C -0.065 4.065 13 C 0.078 3.922 14 H 0.018 0.982 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.213 1.213 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.012 -9.209 3.200 9.955 hybrid contribution 1.312 0.172 -1.626 2.097 sum -0.701 -9.037 1.573 9.200 Atomic orbital electron populations 1.21623 0.95646 0.99596 1.02828 1.21678 0.96546 0.96945 1.00474 1.21589 0.92360 0.93185 0.94866 0.89195 1.22387 0.99012 1.02548 0.99899 1.62380 1.58794 1.03545 0.99389 1.22834 0.96427 0.98061 0.93105 1.20907 0.95938 0.89123 0.92237 1.21683 0.94024 1.00324 1.02188 1.21801 1.00171 0.99172 0.98256 1.61020 1.14697 1.10846 1.45099 1.22350 0.99395 0.98971 0.85800 1.19910 0.93578 0.82896 0.95795 0.98161 1.21107 1.30387 0.94748 1.07545 0.91917 1.24924 0.95126 0.97580 0.96490 1.69866 1.36940 1.10977 1.35430 0.86495 0.78690 0.79847 0.82711 1.19811 1.21028 1.21266 0.94526 0.91395 0.93242 0.93024 0.92680 0.94067 0.93725 0.91269 0.91830 0.96384 0.93862 0.93553 0.90696 0.93483 0.92191 0.92975 0.85817 0.87796 0.92375 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.80 37.16 0.36 -1.74 16 2 C -0.12 -1.86 5.10 -26.73 -0.14 -1.99 16 3 C 0.09 1.68 2.08 -67.71 -0.14 1.54 16 4 H 0.09 1.91 6.28 -51.93 -0.33 1.58 16 5 C -0.18 -3.32 8.50 37.16 0.32 -3.00 16 6 N -0.52 -10.44 3.32 -219.95 -0.73 -11.17 16 7 C 0.03 0.47 3.55 -3.77 -0.01 0.45 16 8 C 0.11 1.91 0.95 -131.55 -0.12 1.79 16 9 C -0.12 -2.14 8.12 37.15 0.30 -1.84 16 10 C -0.14 -1.96 8.73 37.16 0.32 -1.64 16 11 N -0.69 -13.72 6.35 -99.83 -0.63 -14.36 16 12 C 0.06 1.48 5.37 -3.77 -0.02 1.46 16 13 C 0.19 4.42 1.45 -68.81 -0.10 4.32 16 14 H 0.00 0.02 6.48 -51.93 -0.34 -0.31 16 15 C -0.50 -13.03 7.93 -34.44 -0.27 -13.31 16 16 H 0.06 1.67 6.45 -52.49 -0.34 1.33 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -24.60 11.34 55.43 0.63 -23.97 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.84 6.00 -51.93 -0.31 0.53 16 28 H 0.04 0.72 6.56 -51.93 -0.34 0.38 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.48 6.48 -51.93 -0.34 1.15 16 31 H 0.06 1.06 5.95 -51.93 -0.31 0.75 16 32 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.47 5.94 -51.93 -0.31 1.16 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.33 6.47 8.79 -39.30 -0.35 6.12 16 40 H 0.10 2.73 6.12 -51.93 -0.32 2.41 16 41 H 0.06 1.42 6.34 -51.93 -0.33 1.09 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -25.96 306.06 -8.02 -33.98 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.28 Total: 7.39 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.40 Total: -12.45 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.73 Total: -49.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.96 -8.02 -33.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.436 kcal (2) G-P(sol) polarization free energy of solvation -25.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds