Wall clock time and date at job start Mon Mar 30 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 H 1.09002 * 109.47083 * 305.00518 * 3 2 1 5 5 C 1.52996 * 109.47476 * 185.00090 * 3 2 1 6 6 N 1.46901 * 109.47037 * 65.00050 * 3 2 1 7 7 C 1.46952 * 111.00231 * 56.20430 * 6 3 2 8 8 C 1.53051 * 109.36760 * 183.19359 * 7 6 3 9 9 C 1.52990 * 109.49328 * 61.55862 * 8 7 6 10 10 C 1.52999 * 109.49157 * 181.63366 * 8 7 6 11 11 N 1.46961 * 109.35933 * 301.59043 * 8 7 6 12 12 C 1.46961 * 110.87648 * 59.32370 * 11 8 7 13 13 C 1.46955 * 111.00136 * 180.02562 * 6 3 2 14 14 H 1.09003 * 109.48837 * 296.79967 * 13 6 3 15 15 C 1.50702 * 109.48829 * 56.84208 * 13 6 3 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 13 6 17 17 C 1.37884 * 119.99942 * 179.72199 * 15 13 6 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 H 1.09005 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46907 * 299.99731 * 1 2 3 25 25 H 1.08996 * 109.47275 * 60.00249 * 1 2 3 26 26 H 1.08991 * 109.47336 * 240.00319 * 2 1 3 27 27 H 1.08996 * 109.47275 * 119.99751 * 2 1 3 28 28 H 1.09001 * 109.46848 * 300.00029 * 5 3 2 29 29 H 1.08998 * 109.47317 * 60.00193 * 5 3 2 30 30 H 1.08997 * 109.47493 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.48906 * 303.15334 * 7 6 3 32 32 H 1.09000 * 109.49300 * 63.21837 * 7 6 3 33 33 H 1.09000 * 109.47029 * 60.00527 * 9 8 7 34 34 H 1.08996 * 109.47272 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47423 * 300.00697 * 9 8 7 36 36 H 1.08997 * 109.47296 * 59.99013 * 10 8 7 37 37 H 1.08994 * 109.47278 * 179.97438 * 10 8 7 38 38 H 1.09007 * 109.46417 * 299.99759 * 10 8 7 39 39 H 1.00893 * 111.00625 * 295.46250 * 11 8 7 40 40 H 1.08998 * 109.48731 * 180.70615 * 12 11 8 41 41 H 1.09007 * 109.48579 * 60.64653 * 12 11 8 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 2.1451 1.3478 2.4176 8 6 1.6530 2.0189 3.7021 9 6 0.1236 2.0001 3.7344 10 6 2.1990 1.2625 4.9148 11 7 2.1271 3.4095 3.7377 12 6 1.6335 4.1610 2.5753 13 6 2.1249 3.4900 1.2906 14 1 3.2146 3.5038 1.2670 15 6 1.5867 4.2348 0.0961 16 1 0.9556 3.7265 -0.6179 17 6 1.8949 5.5670 -0.0818 18 7 2.6631 6.1860 0.7878 19 14 1.2215 6.4922 -1.5582 20 1 0.3899 5.5761 -2.3793 21 1 0.3899 7.6307 -1.0917 22 1 2.3490 7.0056 -2.3771 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9994 0.9054 0.7161 29 1 3.8532 0.9572 -1.0571 30 1 3.9281 2.4721 -0.1262 31 1 1.7704 0.3251 2.3753 32 1 3.2350 1.3369 2.4075 33 1 -0.2278 0.9687 3.7061 34 1 -0.2265 2.4777 4.6494 35 1 -0.2648 2.5400 2.8708 36 1 3.2886 1.2771 4.8917 37 1 1.8488 1.7409 5.8293 38 1 1.8488 0.2306 4.8870 39 1 3.1339 3.4471 3.7914 40 1 2.0080 5.1837 2.6177 41 1 0.5435 4.1719 2.5855 42 1 2.8802 7.1231 0.6624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220417980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:52 Heat of formation + Delta-G solvation = -17.067974 kcal Electronic energy + Delta-G solvation = -19432.822580 eV Core-core repulsion = 16832.694293 eV Total energy + Delta-G solvation = -2600.128286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92404 -37.41687 -35.48566 -33.21557 -32.31569 -30.25952 -29.12119 -28.12422 -25.97194 -25.65201 -24.40053 -22.18708 -20.76323 -19.65345 -18.20133 -17.21359 -16.36251 -16.34271 -15.60679 -15.52309 -15.22605 -14.71029 -14.53502 -14.34293 -14.14268 -13.46542 -13.18460 -13.08252 -12.87597 -12.83207 -12.75003 -12.57123 -12.54743 -12.22029 -12.12159 -11.96050 -11.78438 -11.63808 -11.56196 -11.48055 -11.19385 -10.84921 -10.52215 -9.09965 -8.68882 -8.11109 -6.18937 1.38128 1.41420 1.51593 2.41508 3.16949 3.29370 3.59345 3.99840 4.13480 4.22205 4.31645 4.34685 4.46993 4.56092 4.64143 4.72224 4.80029 4.83256 4.88315 4.93651 5.00075 5.06988 5.09038 5.10306 5.18556 5.21602 5.24991 5.27708 5.41739 5.48165 5.54372 5.58776 5.64242 5.73818 5.81300 6.16425 6.38880 6.54260 6.68683 6.83844 6.97820 7.48508 8.94776 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.010464 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.198943 B = 2675.164957 C = 3409.451925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.170 4.170 6 N -0.518 5.518 7 C 0.029 3.971 8 C 0.103 3.897 9 C -0.118 4.118 10 C -0.127 4.127 11 N -0.686 5.686 12 C 0.080 3.920 13 C 0.199 3.801 14 H -0.035 1.035 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.011 0.989 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.326 0.674 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -11.966 2.994 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C -0.024 4.024 4 H 0.079 0.921 5 C -0.228 4.228 6 N -0.242 5.242 7 C -0.100 4.100 8 C 0.012 3.988 9 C -0.176 4.176 10 C -0.185 4.185 11 N -0.314 5.314 12 C -0.050 4.050 13 C 0.090 3.910 14 H -0.017 1.017 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.519 -11.565 3.483 12.338 hybrid contribution 1.471 0.856 -1.709 2.412 sum -1.047 -10.709 1.774 10.905 Atomic orbital electron populations 1.21576 0.95150 1.00990 1.01566 1.21609 0.96861 0.94218 1.01982 1.21633 0.92513 0.95060 0.93219 0.92120 1.22268 0.98706 1.00360 1.01508 1.62318 1.58726 1.02193 1.00979 1.22894 0.95988 0.98878 0.92267 1.21146 0.96357 0.87701 0.93603 1.21615 0.93571 1.01471 1.00919 1.21732 1.00368 0.99999 0.96449 1.60987 1.14633 1.12704 1.43081 1.21916 0.98096 0.97859 0.87092 1.19595 0.91162 0.85119 0.95126 1.01723 1.21340 1.29996 0.95156 1.08220 0.92822 1.25614 0.95508 0.98456 0.98815 1.69995 1.37936 1.11061 1.36777 0.85592 0.78062 0.78590 0.79895 1.19410 1.20775 1.21027 0.91731 0.93025 0.94208 0.91091 0.91465 0.92985 0.91569 0.95258 0.89405 0.97123 0.91330 0.93189 0.93774 0.93087 0.91760 0.90441 0.85841 0.91151 0.93825 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.80 71.98 0.71 -3.05 16 2 C -0.11 -3.11 5.10 30.59 0.16 -2.95 16 3 C 0.08 3.15 2.08 44.91 0.09 3.24 16 4 H 0.06 2.61 6.28 -2.39 -0.01 2.60 16 5 C -0.17 -6.20 8.50 71.98 0.61 -5.59 16 6 N -0.52 -20.93 3.32 -849.78 -2.82 -23.75 16 7 C 0.03 1.01 3.55 86.31 0.31 1.31 16 8 C 0.10 3.42 0.95 3.53 0.00 3.43 16 9 C -0.12 -3.84 8.12 71.98 0.58 -3.26 16 10 C -0.13 -3.26 8.73 71.98 0.63 -2.64 16 11 N -0.69 -27.45 6.35 -469.76 -2.98 -30.43 16 12 C 0.08 3.88 5.37 86.31 0.46 4.34 16 13 C 0.20 9.77 1.45 44.17 0.06 9.83 16 14 H -0.03 -1.93 6.48 -2.39 -0.02 -1.94 16 15 C -0.51 -27.50 7.93 25.60 0.20 -27.30 16 16 H 0.05 2.94 6.45 -2.91 -0.02 2.93 16 17 C 0.01 0.81 5.30 84.66 0.45 1.26 16 18 N -0.92 -52.40 11.34 21.45 0.24 -52.16 16 19 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.05 1.59 7.75 -2.39 -0.02 1.57 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 1.77 6.00 -2.39 -0.01 1.76 16 28 H 0.05 1.76 6.56 -2.39 -0.02 1.74 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.28 6.48 -2.39 -0.02 1.26 16 31 H 0.09 2.62 5.95 -2.38 -0.01 2.60 16 32 H 0.01 0.39 6.57 -2.39 -0.02 0.37 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.71 5.94 -2.39 -0.01 1.69 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.33 13.05 8.79 -89.70 -0.79 12.26 16 40 H 0.07 3.88 6.12 -2.39 -0.01 3.87 16 41 H 0.04 2.21 6.34 -2.38 -0.02 2.19 16 42 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -57.89 306.06 0.94 -56.96 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.20 Total: 24.72 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.27 Total: -21.35 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -5.56 Total: -106.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -57.89 0.94 -56.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220417980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.889 kcal (2) G-P(sol) polarization free energy of solvation -57.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds