Wall clock time and date at job start Mon Mar 30 2020 03:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46777 * 2 1 4 4 N 1.46903 * 109.47276 * 185.36588 * 3 2 1 5 5 C 1.46959 * 110.99929 * 87.25757 * 4 3 2 6 6 H 1.09004 * 109.48767 * 63.21828 * 5 4 3 7 7 C 1.50701 * 109.48886 * 303.16323 * 5 4 3 8 8 H 1.08001 * 120.00100 * 326.39898 * 7 5 4 9 9 C 1.37874 * 120.00174 * 146.40360 * 7 5 4 10 10 N 1.31517 * 120.00132 * 179.97438 * 9 7 5 11 11 Si 1.86801 * 120.00016 * 359.97438 * 9 7 5 12 12 H 1.48503 * 109.47171 * 90.00112 * 11 9 7 13 13 H 1.48499 * 109.47308 * 209.99708 * 11 9 7 14 14 H 1.48494 * 109.47248 * 330.00153 * 11 9 7 15 15 C 1.53046 * 109.36871 * 183.18915 * 5 4 3 16 16 N 1.46958 * 109.36325 * 301.60530 * 15 5 4 17 17 C 1.46902 * 110.99801 * 183.18888 * 16 15 5 18 18 C 1.46955 * 110.88440 * 59.31766 * 16 15 5 19 19 C 1.46949 * 111.00261 * 211.05832 * 4 3 2 20 20 C 1.52999 * 109.49049 * 296.78088 * 19 4 3 21 21 C 1.52998 * 109.49146 * 56.82296 * 19 4 3 22 22 H 1.09009 * 109.46867 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47445 * 60.00128 * 1 2 3 24 24 H 1.09004 * 109.47441 * 299.99708 * 1 2 3 25 25 H 1.08998 * 109.47445 * 119.99872 * 2 1 3 26 26 H 1.09004 * 109.47441 * 240.00292 * 2 1 3 27 27 H 1.09005 * 109.47280 * 305.36789 * 3 2 1 28 28 H 1.09004 * 109.47054 * 65.36809 * 3 2 1 29 29 H 0.97003 * 119.99833 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.48929 * 181.63284 * 15 5 4 31 31 H 1.09002 * 109.50137 * 61.57890 * 15 5 4 32 32 H 1.09000 * 109.46626 * 296.19725 * 17 16 15 33 33 H 1.08995 * 109.47598 * 56.19253 * 17 16 15 34 34 H 1.08998 * 109.47139 * 176.20109 * 17 16 15 35 35 H 1.08993 * 109.48740 * 180.71382 * 18 16 15 36 36 H 1.08994 * 109.50543 * 60.65421 * 18 16 15 37 37 H 1.08993 * 109.47268 * 59.99986 * 20 19 4 38 38 H 1.09006 * 109.47011 * 180.02562 * 20 19 4 39 39 H 1.09002 * 109.47109 * 299.99752 * 20 19 4 40 40 H 1.09009 * 109.46764 * 59.99902 * 21 19 4 41 41 H 1.09000 * 109.47543 * 179.97438 * 21 19 4 42 42 H 1.08997 * 109.47041 * 300.00370 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5032 1.4447 -0.1295 5 6 3.9069 1.4225 -1.5424 6 1 3.5588 2.3309 -2.0343 7 6 3.3012 0.2202 -2.2196 8 1 3.1638 -0.6981 -1.6680 9 6 2.9225 0.2923 -3.5433 10 7 2.3944 -0.7571 -4.1344 11 14 3.1595 1.8808 -4.4973 12 1 4.4990 1.8780 -5.1385 13 1 2.1107 1.9916 -5.5427 14 1 3.0574 3.0355 -3.5693 15 6 5.4327 1.3452 -1.6332 16 7 6.0212 2.4985 -0.9382 17 6 7.4845 2.5007 -1.0679 18 6 5.6177 2.5206 0.4747 19 6 4.0917 2.5980 0.5653 20 6 3.6063 3.8918 -0.0914 21 6 3.6658 2.5805 2.0347 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6001 1.9834 -0.8380 28 1 1.7571 1.9278 0.9342 29 1 2.1277 -0.7062 -5.0656 30 1 5.7358 1.3579 -2.6801 31 1 5.7788 0.4234 -1.1655 32 1 7.8943 1.6198 -0.5735 33 1 7.7559 2.4840 -2.1234 34 1 7.8892 3.3995 -0.6027 35 1 6.0556 3.3903 0.9644 36 1 5.9656 1.6124 0.9668 37 1 2.5195 3.9457 -0.0283 38 1 4.0434 4.7471 0.4240 39 1 3.9106 3.9044 -1.1380 40 1 4.0125 1.6590 2.5025 41 1 4.1029 3.4359 2.5500 42 1 2.5790 2.6339 2.0986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220418825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:41 Heat of formation + Delta-G solvation = -1.068900 kcal Electronic energy + Delta-G solvation = -19437.903323 eV Core-core repulsion = 16838.468809 eV Total energy + Delta-G solvation = -2599.434515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99950 -37.06614 -35.54873 -34.24983 -33.00298 -29.81057 -28.15101 -28.00391 -27.20096 -25.92624 -23.18643 -22.20871 -21.78402 -19.42125 -18.72282 -16.97325 -16.90770 -16.12460 -15.88350 -15.52697 -15.34045 -15.09714 -14.63149 -14.33797 -14.11900 -13.80570 -13.45693 -13.25872 -13.10230 -12.86955 -12.78584 -12.61967 -12.52602 -12.34420 -12.15968 -12.10743 -11.92319 -11.69639 -11.39015 -11.22932 -11.05571 -10.84046 -10.38088 -9.21929 -8.78973 -8.23234 -6.23610 1.29974 1.33748 1.41651 2.33534 2.96702 3.18620 3.32604 3.92482 4.15623 4.21979 4.32860 4.42324 4.45678 4.56484 4.62007 4.66253 4.67719 4.72413 4.76226 4.83173 4.86497 4.91672 4.94412 4.99247 5.04892 5.13712 5.16804 5.19881 5.30779 5.34678 5.37196 5.54982 5.57755 5.66417 5.91480 6.12045 6.22386 6.27379 6.56906 6.80369 6.89459 7.40676 8.90859 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.013359 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.927502 B = 2095.480019 C = 3116.583914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.183 3.817 6 H 0.014 0.986 7 C -0.487 4.487 8 H 0.059 0.941 9 C 0.026 3.974 10 N -0.940 5.940 11 Si 0.918 3.082 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.254 1.254 15 C 0.075 3.925 16 N -0.559 5.559 17 C 0.027 3.973 18 C 0.076 3.924 19 C 0.093 3.907 20 C -0.161 4.161 21 C -0.131 4.131 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.005 0.995 28 H 0.079 0.921 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.029 0.971 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 9.183 10.672 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C -0.045 4.045 4 N -0.256 5.256 5 C 0.075 3.925 6 H 0.031 0.969 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.172 4.172 10 N -0.580 5.580 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.217 1.217 14 H -0.179 1.179 15 C -0.053 4.053 16 N -0.283 5.283 17 C -0.121 4.121 18 C -0.052 4.052 19 C 0.003 3.997 20 C -0.220 4.220 21 C -0.188 4.188 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.024 0.976 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.002 9.125 10.506 14.479 hybrid contribution -0.050 0.081 -1.243 1.247 sum 3.952 9.206 9.263 13.644 Atomic orbital electron populations 1.21620 0.95810 1.01115 1.00867 1.21918 0.95092 0.97529 1.02688 1.21828 0.87352 0.96598 0.98715 1.62317 1.09234 1.40070 1.13997 1.19777 0.91309 0.94995 0.86384 0.96900 1.21164 1.38176 0.98103 0.95095 0.92283 1.25585 0.94808 0.98326 0.98478 1.70008 1.44226 1.31212 1.12562 0.86171 0.78144 0.82400 0.78789 1.19550 1.21690 1.17888 1.22258 0.96267 0.90150 0.96644 1.62257 1.10043 1.42301 1.13719 1.22377 0.86606 1.01192 1.01947 1.22144 0.94357 1.00725 0.88005 1.21332 0.94083 0.88980 0.95305 1.22276 1.00032 0.98569 1.01108 1.21855 1.01597 1.02537 0.92829 0.93059 0.94644 0.91613 0.93119 0.90816 0.97648 0.90287 0.92771 0.93229 0.96347 0.95816 0.91961 0.89486 0.88545 0.95263 0.93784 0.90709 0.94128 0.92442 0.90100 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.91 71.98 0.71 -4.01 16 2 C -0.13 -5.48 5.93 30.59 0.18 -5.30 16 3 C 0.08 3.23 3.40 86.30 0.29 3.52 16 4 N -0.53 -21.52 4.22 -825.64 -3.49 -25.00 16 5 C 0.18 8.54 0.99 44.17 0.04 8.59 16 6 H 0.01 0.67 3.18 -2.38 -0.01 0.66 16 7 C -0.49 -26.66 6.76 25.60 0.17 -26.49 16 8 H 0.06 3.60 6.00 -2.91 -0.02 3.59 16 9 C 0.03 1.49 5.47 84.65 0.46 1.95 16 10 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 11 Si 0.92 44.76 27.15 68.60 1.86 46.62 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.25 -12.03 5.95 99.48 0.59 -11.44 16 15 C 0.08 3.25 4.83 86.31 0.42 3.67 16 16 N -0.56 -19.50 4.28 -921.95 -3.95 -23.45 16 17 C 0.03 0.74 9.60 127.69 1.23 1.96 16 18 C 0.08 2.32 4.33 86.31 0.37 2.69 16 19 C 0.09 2.99 0.68 3.54 0.00 3.00 16 20 C -0.16 -5.13 7.75 71.98 0.56 -4.57 16 21 C -0.13 -3.28 8.29 71.98 0.60 -2.68 16 22 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 3.74 4.09 -2.38 -0.01 3.73 16 27 H 0.01 0.23 7.73 -2.38 -0.02 0.21 16 28 H 0.08 2.59 5.24 -2.38 -0.01 2.58 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.05 2.23 7.68 -2.39 -0.02 2.22 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 1.39 7.23 -2.39 -0.02 1.38 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.04 1.54 5.94 -2.39 -0.01 1.52 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.53 5.86 -2.39 -0.01 1.52 16 Total: -1.00 -62.10 304.82 0.62 -61.48 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.85 Total: 14.87 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.04 Total: -17.66 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -7.13 Total: -105.31 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.86 Total: 46.62 kcal Total: -62.10 0.62 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220418825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.408 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds