Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46824 * 2 1 4 4 N 1.46904 * 109.46878 * 186.42553 * 3 2 1 5 5 C 1.46961 * 110.99584 * 282.83911 * 4 3 2 6 6 H 1.09002 * 109.48796 * 296.78078 * 5 4 3 7 7 C 1.50700 * 109.48870 * 56.82547 * 5 4 3 8 8 H 1.07996 * 120.00162 * 35.56916 * 7 5 4 9 9 C 1.37878 * 119.99911 * 215.57136 * 7 5 4 10 10 N 1.31512 * 119.99873 * 184.94545 * 9 7 5 11 11 Si 1.86797 * 119.99945 * 4.93914 * 9 7 5 12 12 H 1.48501 * 109.47284 * 84.89779 * 11 9 7 13 13 H 1.48494 * 109.47269 * 204.89593 * 11 9 7 14 14 H 1.48503 * 109.47224 * 324.89640 * 11 9 7 15 15 C 1.53050 * 109.36200 * 176.81513 * 5 4 3 16 16 N 1.47000 * 109.37863 * 58.39997 * 15 5 4 17 17 C 1.46901 * 111.02998 * 176.82343 * 16 15 5 18 18 C 1.46955 * 110.85778 * 300.69499 * 16 15 5 19 19 C 1.46956 * 111.00035 * 159.04353 * 4 3 2 20 20 C 1.53004 * 109.49083 * 63.21743 * 19 4 3 21 21 C 1.53003 * 109.48750 * 303.15384 * 19 4 3 22 22 H 1.08994 * 109.47445 * 300.00730 * 1 2 3 23 23 H 1.09001 * 109.46974 * 60.00659 * 1 2 3 24 24 H 1.08999 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47187 * 240.00001 * 2 1 3 26 26 H 1.09001 * 109.46974 * 119.99341 * 2 1 3 27 27 H 1.08994 * 109.47801 * 66.42276 * 3 2 1 28 28 H 1.09003 * 109.47025 * 306.41414 * 3 2 1 29 29 H 0.96997 * 119.99721 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.48942 * 178.37212 * 15 5 4 31 31 H 1.09009 * 109.48707 * 298.41388 * 15 5 4 32 32 H 1.09000 * 109.47343 * 183.79537 * 17 16 15 33 33 H 1.09010 * 109.46981 * 303.78995 * 17 16 15 34 34 H 1.08997 * 109.47085 * 63.78632 * 17 16 15 35 35 H 1.09002 * 109.48639 * 299.33010 * 18 16 15 36 36 H 1.08994 * 109.48791 * 179.28908 * 18 16 15 37 37 H 1.08999 * 109.46872 * 179.89118 * 20 19 4 38 38 H 1.09000 * 109.46676 * 299.89213 * 20 19 4 39 39 H 1.09000 * 109.47027 * 59.89318 * 20 19 4 40 40 H 1.09007 * 109.47128 * 300.10499 * 21 19 4 41 41 H 1.08988 * 109.47423 * 60.10852 * 21 19 4 42 42 H 1.08998 * 109.47064 * 180.10993 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5008 1.4455 -0.1550 5 6 4.1649 1.0919 1.1074 6 1 3.9397 1.8469 1.8607 7 6 3.6688 -0.2511 1.5776 8 1 3.4362 -1.0228 0.8587 9 6 3.5119 -0.4948 2.9256 10 7 3.1728 -1.6954 3.3417 11 14 3.7810 0.8804 4.1608 12 1 2.5320 1.6713 4.3011 13 1 4.1491 0.2989 5.4766 14 1 4.8760 1.7645 3.6866 15 6 5.6778 1.0285 0.8844 16 7 6.1527 2.3285 0.3888 17 6 7.6134 2.3317 0.2335 18 6 5.4881 2.6817 -0.8734 19 6 3.9752 2.7451 -0.6504 20 6 3.6561 3.8312 0.3790 21 6 3.2777 3.0731 -1.9721 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8901 27 1 1.7735 1.9222 0.9418 28 1 1.5858 1.9884 -0.8270 29 1 3.0620 -1.8666 4.2899 30 1 6.1747 0.7949 1.8260 31 1 5.9052 0.2545 0.1513 32 1 7.9444 3.3251 -0.0696 33 1 8.0803 2.0670 1.1823 34 1 7.8995 1.6055 -0.5273 35 1 5.7133 1.9267 -1.6266 36 1 5.8466 3.6531 -1.2136 37 1 4.0099 4.7947 0.0120 38 1 2.5786 3.8761 0.5375 39 1 4.1525 3.5965 1.3206 40 1 3.5047 2.2985 -2.7047 41 1 2.2005 3.1182 -1.8130 42 1 3.6313 4.0362 -2.3403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220418895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = 17.712319 kcal Electronic energy + Delta-G solvation = -19462.860559 eV Core-core repulsion = 16864.240459 eV Total energy + Delta-G solvation = -2598.620100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48519 -35.58271 -33.94831 -32.41089 -31.23646 -28.23674 -26.86662 -26.64467 -25.46618 -24.43384 -21.55103 -20.52685 -20.18798 -17.72170 -16.78347 -15.41111 -15.20194 -14.56557 -14.24447 -14.05432 -13.75139 -13.62046 -12.87170 -12.76896 -12.49381 -12.32235 -12.12985 -11.83375 -11.54540 -11.46453 -11.27342 -11.06037 -10.88353 -10.70835 -10.65457 -10.54622 -10.28249 -9.88463 -9.76514 -9.71163 -9.38228 -8.81387 -8.42969 -7.74761 -7.17574 -6.12193 -4.06952 3.27070 3.36250 3.42445 4.38899 4.52754 4.73264 5.21499 5.26133 5.52104 5.58659 5.69137 5.82189 5.87150 5.91753 5.98984 6.02092 6.05700 6.11787 6.15064 6.17738 6.31586 6.34253 6.37445 6.47854 6.50867 6.53038 6.59638 6.75457 6.81080 6.82313 6.92981 7.18322 7.28195 7.45733 7.64266 7.73663 7.84220 8.10820 8.24539 8.67246 8.94915 9.50457 10.98424 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.013161 C = 0.009083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.987096 B = 2127.048295 C = 3081.991464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.078 3.922 4 N -0.522 5.522 5 C 0.186 3.814 6 H 0.017 0.983 7 C -0.500 4.500 8 H 0.093 0.907 9 C 0.074 3.926 10 N -0.892 5.892 11 Si 0.864 3.136 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.260 1.260 15 C 0.067 3.933 16 N -0.551 5.551 17 C 0.028 3.972 18 C 0.076 3.924 19 C 0.102 3.898 20 C -0.168 4.168 21 C -0.138 4.138 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.133 0.867 27 H 0.021 0.979 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 8.655 -6.959 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.050 4.050 4 N -0.246 5.246 5 C 0.079 3.921 6 H 0.034 0.966 7 C -0.539 4.539 8 H 0.111 0.889 9 C -0.129 4.129 10 N -0.530 5.530 11 Si 0.691 3.309 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.184 1.184 15 C -0.061 4.061 16 N -0.276 5.276 17 C -0.121 4.121 18 C -0.053 4.053 19 C 0.011 3.989 20 C -0.227 4.227 21 C -0.196 4.196 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.150 0.850 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.664 8.532 -6.788 11.029 hybrid contribution 0.150 0.744 0.791 1.096 sum 1.814 9.275 -5.998 11.194 Atomic orbital electron populations 1.21767 0.98438 1.00377 0.99774 1.22365 0.92381 0.97262 1.06190 1.21841 0.87776 0.97472 0.97874 1.62485 1.05315 1.24984 1.31845 1.19787 0.89308 0.96459 0.86522 0.96581 1.20951 1.43157 0.97208 0.92537 0.88949 1.24964 0.94687 0.95151 0.98065 1.69880 1.47473 1.20178 1.15439 0.87036 0.79597 0.83215 0.81008 1.20333 1.21593 1.18415 1.22582 0.97997 0.86840 0.98638 1.62304 1.04371 1.32896 1.27989 1.22285 0.89183 1.00103 1.00522 1.22033 0.93384 0.99253 0.90614 1.21054 0.93700 0.89929 0.94204 1.22352 1.00576 0.98437 1.01369 1.21898 1.00449 1.00460 0.96765 0.93763 0.94731 0.93541 0.93230 0.84979 0.96034 0.93140 0.92533 0.91587 0.94726 0.92413 0.91897 0.96214 0.94718 0.91823 0.93494 0.93531 0.91228 0.92239 0.92226 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 37.16 0.37 -2.20 16 2 C -0.14 -3.00 5.04 -26.73 -0.13 -3.14 16 3 C 0.08 1.56 3.77 -3.82 -0.01 1.54 16 4 N -0.52 -10.76 4.29 -212.31 -0.91 -11.67 16 5 C 0.19 4.30 1.15 -68.81 -0.08 4.22 16 6 H 0.02 0.41 3.45 -51.93 -0.18 0.23 16 7 C -0.50 -13.06 5.78 -34.44 -0.20 -13.26 16 8 H 0.09 2.64 6.47 -52.49 -0.34 2.30 16 9 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 10 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 11 Si 0.86 21.12 27.00 -169.99 -4.59 16.53 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.26 -6.25 6.80 56.52 0.38 -5.87 16 15 C 0.07 1.45 4.89 -3.74 -0.02 1.43 16 16 N -0.55 -10.24 4.29 -242.71 -1.04 -11.28 16 17 C 0.03 0.42 9.61 60.07 0.58 1.00 16 18 C 0.08 1.28 4.33 -3.77 -0.02 1.27 16 19 C 0.10 1.78 0.68 -131.54 -0.09 1.69 16 20 C -0.17 -2.93 7.70 37.16 0.29 -2.64 16 21 C -0.14 -2.02 8.24 37.16 0.31 -1.71 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.13 3.27 4.33 -51.93 -0.22 3.05 16 27 H 0.02 0.46 7.39 -51.93 -0.38 0.08 16 28 H 0.05 0.90 5.36 -51.93 -0.28 0.62 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.94 8.13 -51.92 -0.42 0.51 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.80 6.99 -51.93 -0.36 0.43 16 39 H 0.07 1.39 5.94 -51.93 -0.31 1.08 16 40 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 41 H 0.06 0.86 5.96 -51.94 -0.31 0.55 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -27.41 305.26 -7.74 -35.15 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.46 Total: 1.55 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.89 Total: -9.88 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -1.18 Total: -47.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.41 -7.74 -35.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220418895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.859 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds