Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46824 * 2 1 4 4 N 1.46904 * 109.46878 * 186.42553 * 3 2 1 5 5 C 1.46961 * 110.99584 * 282.83911 * 4 3 2 6 6 H 1.09002 * 109.48796 * 296.78078 * 5 4 3 7 7 C 1.50700 * 109.48870 * 56.82547 * 5 4 3 8 8 H 1.07996 * 120.00162 * 35.56916 * 7 5 4 9 9 C 1.37878 * 119.99911 * 215.57136 * 7 5 4 10 10 N 1.31512 * 119.99873 * 184.94545 * 9 7 5 11 11 Si 1.86797 * 119.99945 * 4.93914 * 9 7 5 12 12 H 1.48501 * 109.47284 * 84.89779 * 11 9 7 13 13 H 1.48494 * 109.47269 * 204.89593 * 11 9 7 14 14 H 1.48503 * 109.47224 * 324.89640 * 11 9 7 15 15 C 1.53050 * 109.36200 * 176.81513 * 5 4 3 16 16 N 1.47000 * 109.37863 * 58.39997 * 15 5 4 17 17 C 1.46901 * 111.02998 * 176.82343 * 16 15 5 18 18 C 1.46955 * 110.85778 * 300.69499 * 16 15 5 19 19 C 1.46956 * 111.00035 * 159.04353 * 4 3 2 20 20 C 1.53004 * 109.49083 * 63.21743 * 19 4 3 21 21 C 1.53003 * 109.48750 * 303.15384 * 19 4 3 22 22 H 1.08994 * 109.47445 * 300.00730 * 1 2 3 23 23 H 1.09001 * 109.46974 * 60.00659 * 1 2 3 24 24 H 1.08999 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47187 * 240.00001 * 2 1 3 26 26 H 1.09001 * 109.46974 * 119.99341 * 2 1 3 27 27 H 1.08994 * 109.47801 * 66.42276 * 3 2 1 28 28 H 1.09003 * 109.47025 * 306.41414 * 3 2 1 29 29 H 0.96997 * 119.99721 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.48942 * 178.37212 * 15 5 4 31 31 H 1.09009 * 109.48707 * 298.41388 * 15 5 4 32 32 H 1.09000 * 109.47343 * 183.79537 * 17 16 15 33 33 H 1.09010 * 109.46981 * 303.78995 * 17 16 15 34 34 H 1.08997 * 109.47085 * 63.78632 * 17 16 15 35 35 H 1.09002 * 109.48639 * 299.33010 * 18 16 15 36 36 H 1.08994 * 109.48791 * 179.28908 * 18 16 15 37 37 H 1.08999 * 109.46872 * 179.89118 * 20 19 4 38 38 H 1.09000 * 109.46676 * 299.89213 * 20 19 4 39 39 H 1.09000 * 109.47027 * 59.89318 * 20 19 4 40 40 H 1.09007 * 109.47128 * 300.10499 * 21 19 4 41 41 H 1.08988 * 109.47423 * 60.10852 * 21 19 4 42 42 H 1.08998 * 109.47064 * 180.10993 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5008 1.4455 -0.1550 5 6 4.1649 1.0919 1.1074 6 1 3.9397 1.8469 1.8607 7 6 3.6688 -0.2511 1.5776 8 1 3.4362 -1.0228 0.8587 9 6 3.5119 -0.4948 2.9256 10 7 3.1728 -1.6954 3.3417 11 14 3.7810 0.8804 4.1608 12 1 2.5320 1.6713 4.3011 13 1 4.1491 0.2989 5.4766 14 1 4.8760 1.7645 3.6866 15 6 5.6778 1.0285 0.8844 16 7 6.1527 2.3285 0.3888 17 6 7.6134 2.3317 0.2335 18 6 5.4881 2.6817 -0.8734 19 6 3.9752 2.7451 -0.6504 20 6 3.6561 3.8312 0.3790 21 6 3.2777 3.0731 -1.9721 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8901 27 1 1.7735 1.9222 0.9418 28 1 1.5858 1.9884 -0.8270 29 1 3.0620 -1.8666 4.2899 30 1 6.1747 0.7949 1.8260 31 1 5.9052 0.2545 0.1513 32 1 7.9444 3.3251 -0.0696 33 1 8.0803 2.0670 1.1823 34 1 7.8995 1.6055 -0.5273 35 1 5.7133 1.9267 -1.6266 36 1 5.8466 3.6531 -1.2136 37 1 4.0099 4.7947 0.0120 38 1 2.5786 3.8761 0.5375 39 1 4.1525 3.5965 1.3206 40 1 3.5047 2.2985 -2.7047 41 1 2.2005 3.1182 -1.8130 42 1 3.6313 4.0362 -2.3403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220418895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -0.927073 kcal Electronic energy + Delta-G solvation = -19463.668824 eV Core-core repulsion = 16864.240459 eV Total energy + Delta-G solvation = -2599.428365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01938 -37.09357 -35.63190 -34.17488 -32.99727 -29.82110 -28.16090 -28.00952 -27.26209 -25.92340 -23.16742 -22.16482 -21.82130 -19.37597 -18.67487 -16.98516 -16.79965 -16.15335 -15.89276 -15.64729 -15.32366 -15.11803 -14.63084 -14.25415 -14.07531 -13.82633 -13.47453 -13.27787 -13.07943 -12.85666 -12.76923 -12.61304 -12.51723 -12.33436 -12.17703 -12.04089 -11.91642 -11.76248 -11.46421 -11.22812 -11.06718 -10.79142 -10.39384 -9.21650 -8.82735 -8.24414 -6.19475 1.29002 1.34113 1.43929 2.34023 2.95929 3.18683 3.32855 3.92064 4.15581 4.21568 4.33389 4.43242 4.45176 4.54970 4.62139 4.66233 4.68303 4.72529 4.75242 4.83092 4.85979 4.89638 4.95760 4.98977 5.06276 5.13593 5.15511 5.18615 5.29065 5.35260 5.38216 5.55606 5.58869 5.65812 6.03753 6.11632 6.22728 6.23629 6.56382 6.80791 6.86434 7.39732 8.89981 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.013161 C = 0.009083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.987096 B = 2127.048295 C = 3081.991464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.192 3.808 6 H 0.005 0.995 7 C -0.483 4.483 8 H 0.058 0.942 9 C 0.026 3.974 10 N -0.937 5.937 11 Si 0.917 3.083 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.253 1.253 15 C 0.077 3.923 16 N -0.559 5.559 17 C 0.027 3.973 18 C 0.075 3.925 19 C 0.093 3.907 20 C -0.162 4.162 21 C -0.130 4.130 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 11.500 -8.592 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C -0.045 4.045 4 N -0.257 5.257 5 C 0.083 3.917 6 H 0.022 0.978 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.172 4.172 10 N -0.577 5.577 11 Si 0.743 3.257 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.177 1.177 15 C -0.052 4.052 16 N -0.283 5.283 17 C -0.121 4.121 18 C -0.053 4.053 19 C 0.003 3.997 20 C -0.221 4.221 21 C -0.188 4.188 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.977 11.401 -8.442 14.323 hybrid contribution 0.073 -0.140 1.178 1.188 sum 2.050 11.261 -7.265 13.557 Atomic orbital electron populations 1.21681 0.95862 1.01020 1.01064 1.22136 0.94741 0.97498 1.03460 1.21831 0.87734 0.96789 0.98105 1.62396 1.05517 1.27696 1.30086 1.19588 0.90446 0.94082 0.87538 0.97758 1.21049 1.41426 0.97894 0.91798 0.92408 1.25536 0.95193 0.96732 0.99727 1.69998 1.50095 1.22044 1.15601 0.86186 0.79539 0.80910 0.79040 1.20210 1.21534 1.17750 1.22236 0.96854 0.88376 0.97695 1.62260 1.06478 1.30324 1.29281 1.22369 0.86924 1.01951 1.00815 1.22147 0.92881 1.00671 0.89560 1.21325 0.94574 0.88175 0.95660 1.22272 1.00250 0.99648 0.99909 1.21844 1.00256 1.01974 0.94737 0.93954 0.91812 0.93341 0.93930 0.89540 0.97822 0.90111 0.92701 0.93150 0.96362 0.89524 0.91982 0.95808 0.95276 0.88555 0.90655 0.93680 0.94120 0.92436 0.91995 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.91 71.98 0.71 -4.04 16 2 C -0.14 -5.91 5.04 30.60 0.15 -5.75 16 3 C 0.08 3.24 3.77 86.30 0.33 3.56 16 4 N -0.53 -21.53 4.29 -825.62 -3.55 -25.08 16 5 C 0.19 8.91 1.15 44.17 0.05 8.96 16 6 H 0.00 0.24 3.45 -2.39 -0.01 0.23 16 7 C -0.48 -26.25 5.78 25.60 0.15 -26.10 16 8 H 0.06 3.50 6.47 -2.91 -0.02 3.48 16 9 C 0.03 1.49 5.45 84.66 0.46 1.95 16 10 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16 11 Si 0.92 44.68 27.00 68.60 1.85 46.53 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 14 H -0.25 -11.97 6.80 99.48 0.68 -11.29 16 15 C 0.08 3.33 4.89 86.30 0.42 3.75 16 16 N -0.56 -19.63 4.29 -921.81 -3.95 -23.58 16 17 C 0.03 0.76 9.61 127.69 1.23 1.99 16 18 C 0.08 2.32 4.33 86.31 0.37 2.69 16 19 C 0.09 2.98 0.68 3.54 0.00 2.99 16 20 C -0.16 -5.15 7.70 71.98 0.55 -4.59 16 21 C -0.13 -3.28 8.24 71.98 0.59 -2.68 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 4.49 4.33 -2.39 -0.01 4.48 16 27 H 0.00 0.15 7.39 -2.39 -0.02 0.13 16 28 H 0.08 2.66 5.36 -2.39 -0.01 2.64 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.05 2.29 8.13 -2.39 -0.02 2.27 16 31 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.73 8.13 -2.38 -0.02 1.71 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.42 6.99 -2.39 -0.02 1.40 16 39 H 0.04 1.53 5.94 -2.39 -0.01 1.51 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.06 1.53 5.96 -2.39 -0.01 1.51 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -61.48 305.26 0.61 -60.87 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.94 Total: 14.80 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.02 Total: -17.28 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -7.20 Total: -104.92 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.85 Total: 46.53 kcal Total: -61.48 0.61 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220418895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.942 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds