Wall clock time and date at job start Mon Mar 30 2020 03:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 N 1.46904 * 109.46995 * 120.00537 * 2 1 3 5 5 C 1.46958 * 110.99901 * 337.56748 * 4 2 1 6 6 H 1.08996 * 109.48664 * 63.20768 * 5 4 2 7 7 C 1.50694 * 109.48991 * 303.16105 * 5 4 2 8 8 H 1.08004 * 120.00425 * 354.21448 * 7 5 4 9 9 C 1.37887 * 119.99741 * 174.21785 * 7 5 4 10 10 N 1.31517 * 119.99881 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99903 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47290 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47045 * 120.00025 * 11 9 7 14 14 H 1.48500 * 109.47154 * 240.00102 * 11 9 7 15 15 C 1.53051 * 109.36009 * 183.19222 * 5 4 2 16 16 N 1.46957 * 109.36654 * 301.59990 * 15 5 4 17 17 C 1.46895 * 111.00160 * 183.19300 * 16 15 5 18 18 C 1.46951 * 110.87812 * 59.32140 * 16 15 5 19 19 C 1.46950 * 111.00045 * 101.37195 * 4 2 1 20 20 C 1.52991 * 109.49019 * 296.77604 * 19 4 2 21 21 C 1.53000 * 109.49057 * 56.84714 * 19 4 2 22 22 H 1.09000 * 109.46711 * 322.33458 * 1 2 3 23 23 H 1.09004 * 109.46883 * 202.33993 * 1 2 3 24 24 H 1.08998 * 109.47249 * 82.33415 * 1 2 3 25 25 H 1.08998 * 109.46768 * 239.99686 * 2 1 3 26 26 H 1.08998 * 109.47074 * 168.83082 * 3 2 1 27 27 H 1.08999 * 109.47061 * 288.83777 * 3 2 1 28 28 H 1.09001 * 109.46817 * 48.83481 * 3 2 1 29 29 H 0.96997 * 119.99535 * 179.97438 * 10 9 7 30 30 H 1.08993 * 109.49315 * 61.57368 * 15 5 4 31 31 H 1.09003 * 109.48684 * 181.61458 * 15 5 4 32 32 H 1.09003 * 109.47577 * 56.04313 * 17 16 15 33 33 H 1.09000 * 109.47459 * 176.04524 * 17 16 15 34 34 H 1.09001 * 109.46946 * 296.04863 * 17 16 15 35 35 H 1.08997 * 109.49082 * 60.65113 * 18 16 15 36 36 H 1.09004 * 109.49012 * 180.69017 * 18 16 15 37 37 H 1.08996 * 109.47636 * 62.08342 * 20 19 4 38 38 H 1.09007 * 109.47420 * 182.08183 * 20 19 4 39 39 H 1.09004 * 109.47074 * 302.07963 * 20 19 4 40 40 H 1.08992 * 109.47728 * 53.00295 * 21 19 4 41 41 H 1.08999 * 109.47272 * 173.01456 * 21 19 4 42 42 H 1.09005 * 109.46600 * 293.00799 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 0.9995 -0.6989 2.2572 6 1 0.1284 -1.2599 1.9189 7 6 0.5939 0.7176 2.5730 8 1 1.1129 1.5440 2.1100 9 6 -0.4398 0.9588 3.4531 10 7 -1.0713 -0.0474 4.0173 11 14 -0.9421 2.7148 3.8451 12 1 -0.0811 3.6571 3.0863 13 1 -2.3611 2.9215 3.4594 14 1 -0.7839 2.9616 5.3009 15 6 1.5752 -1.3574 3.5133 16 7 2.0057 -2.7254 3.1926 17 6 2.4954 -3.4179 4.3920 18 6 3.0258 -2.7189 2.1348 19 6 2.4502 -2.0605 0.8787 20 6 1.2508 -2.8700 0.3821 21 6 3.5230 -2.0157 -0.2112 22 1 -0.3633 0.8135 0.6280 23 1 -0.3633 -0.9506 0.3906 24 1 -0.3634 0.1371 -1.0185 25 1 1.8933 -0.5139 -0.8900 26 1 3.1117 1.4489 0.1991 27 1 1.8483 1.8956 -0.9726 28 1 1.5234 2.0105 0.7737 29 1 -1.7982 0.1223 4.6367 30 1 2.4296 -0.7807 3.8672 31 1 0.8110 -1.3890 4.2900 32 1 1.7219 -3.4056 5.1600 33 1 2.7416 -4.4496 4.1408 34 1 3.3860 -2.9124 4.7653 35 1 3.8969 -2.1578 2.4730 36 1 3.3195 -3.7436 1.9066 37 1 0.8627 -2.4209 -0.5321 38 1 1.5626 -3.8947 0.1794 39 1 0.4723 -2.8714 1.1451 40 1 4.3220 -1.3396 0.0928 41 1 3.9305 -3.0155 -0.3613 42 1 3.0807 -1.6602 -1.1419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220418974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:47 Heat of formation + Delta-G solvation = 28.092859 kcal Electronic energy + Delta-G solvation = -19762.659639 eV Core-core repulsion = 17164.489673 eV Total energy + Delta-G solvation = -2598.169966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57875 -35.68006 -33.87419 -32.13959 -30.13042 -27.17216 -26.81875 -26.43499 -25.73836 -25.21314 -22.02006 -20.49479 -19.67084 -17.17508 -16.60572 -15.32895 -15.00061 -14.25425 -14.20223 -13.82191 -13.71634 -13.13212 -12.85076 -12.44654 -12.17559 -12.02690 -11.86057 -11.59438 -11.48729 -11.25055 -11.03033 -10.91325 -10.80497 -10.72201 -10.56279 -10.35040 -10.14368 -10.00990 -9.78848 -9.63132 -9.16348 -8.58401 -8.41400 -7.46400 -6.95629 -6.00692 -3.99450 3.29053 3.38189 3.41176 4.40638 4.80472 4.93500 5.31636 5.41709 5.67316 5.74986 5.82911 5.92318 6.00851 6.03871 6.12337 6.16699 6.20985 6.24625 6.34002 6.37264 6.40684 6.47471 6.53733 6.65208 6.75777 6.79442 6.83319 6.94687 6.97955 7.05589 7.17560 7.37711 7.54578 7.75191 7.89449 7.97105 8.04101 8.25138 8.41068 8.73216 9.08344 9.61006 11.07265 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.011638 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.216447 B = 2405.306144 C = 3212.117223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 C -0.141 4.141 4 N -0.524 5.524 5 C 0.216 3.784 6 H 0.031 0.969 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.069 3.931 16 N -0.547 5.547 17 C 0.030 3.970 18 C 0.075 3.925 19 C 0.106 3.894 20 C -0.167 4.167 21 C -0.137 4.137 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.014 0.986 35 H 0.029 0.971 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 -3.784 -5.154 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 C -0.199 4.199 4 N -0.249 5.249 5 C 0.109 3.891 6 H 0.048 0.952 7 C -0.540 4.540 8 H 0.095 0.905 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.058 4.058 16 N -0.271 5.271 17 C -0.118 4.118 18 C -0.054 4.054 19 C 0.015 3.985 20 C -0.226 4.226 21 C -0.195 4.195 22 H 0.108 0.892 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.699 -3.814 -5.005 8.490 hybrid contribution -0.309 0.836 0.407 0.980 sum 5.390 -2.978 -4.598 7.685 Atomic orbital electron populations 1.22610 0.96614 1.04935 0.99084 1.21377 0.93733 0.94662 0.91888 1.22092 1.00886 0.96692 1.00183 1.62628 1.41733 1.12179 1.08366 1.19437 0.88350 0.95764 0.85529 0.95188 1.21454 1.15429 0.92136 1.25030 0.90474 1.24940 0.96441 0.96644 0.96243 1.69941 1.23008 1.29889 1.30019 0.86607 0.78323 0.85387 0.78151 1.19716 1.21199 1.21206 1.22469 0.98269 0.83543 1.01565 1.62292 1.36676 1.20322 1.07782 1.22246 0.98318 0.97809 0.93466 1.22027 0.93025 0.98211 0.92124 1.21006 0.94075 0.90033 0.93365 1.22411 1.00240 0.98831 1.01074 1.21901 0.98756 1.00701 0.98140 0.89169 0.92201 0.95963 0.93009 0.93489 0.94791 0.90507 0.93104 0.96829 0.88650 0.91823 0.92847 0.96773 0.95293 0.92290 0.93587 0.94001 0.90629 0.92317 0.93228 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 7.49 37.16 0.28 -3.30 16 2 C 0.09 1.78 2.00 -67.71 -0.14 1.64 16 3 C -0.14 -2.62 9.08 37.16 0.34 -2.28 16 4 N -0.52 -10.93 4.16 -204.50 -0.85 -11.79 16 5 C 0.22 5.16 0.92 -68.81 -0.06 5.09 16 6 H 0.03 0.81 4.32 -51.93 -0.22 0.59 16 7 C -0.50 -12.84 5.46 -34.44 -0.19 -13.03 16 8 H 0.08 1.98 4.31 -52.48 -0.23 1.75 16 9 C 0.06 1.55 5.33 -17.81 -0.09 1.45 16 10 N -0.89 -24.51 11.78 55.43 0.65 -23.85 16 11 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.07 1.64 4.72 -3.77 -0.02 1.62 16 16 N -0.55 -11.16 4.32 -242.76 -1.05 -12.21 16 17 C 0.03 0.53 9.60 60.06 0.58 1.10 16 18 C 0.07 1.38 4.33 -3.77 -0.02 1.36 16 19 C 0.11 1.94 0.66 -131.55 -0.09 1.85 16 20 C -0.17 -3.03 6.84 37.15 0.25 -2.78 16 21 C -0.14 -2.10 8.14 37.16 0.30 -1.79 16 22 H 0.09 2.06 5.61 -51.93 -0.29 1.77 16 23 H 0.06 1.32 4.55 -51.93 -0.24 1.08 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.93 5.02 -51.93 -0.26 0.67 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.59 4.95 -51.93 -0.26 1.34 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 2.52 6.58 -51.93 -0.34 2.18 16 32 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.60 5.77 -51.93 -0.30 1.30 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.82 6.18 -51.93 -0.32 0.50 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -26.46 295.35 -7.67 -34.13 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.00 Total: 2.63 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 1.15 Total: -9.06 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.25 Total: -47.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.46 -7.67 -34.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220418974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.223 kcal (2) G-P(sol) polarization free energy of solvation -26.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds