Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 N 1.46904 * 109.46995 * 120.00537 * 2 1 3 5 5 C 1.46958 * 110.99901 * 337.56748 * 4 2 1 6 6 H 1.08996 * 109.48664 * 63.20768 * 5 4 2 7 7 C 1.50694 * 109.48991 * 303.16105 * 5 4 2 8 8 H 1.08004 * 120.00425 * 354.21448 * 7 5 4 9 9 C 1.37887 * 119.99741 * 174.21785 * 7 5 4 10 10 N 1.31517 * 119.99881 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99903 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47290 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47045 * 120.00025 * 11 9 7 14 14 H 1.48500 * 109.47154 * 240.00102 * 11 9 7 15 15 C 1.53051 * 109.36009 * 183.19222 * 5 4 2 16 16 N 1.46957 * 109.36654 * 301.59990 * 15 5 4 17 17 C 1.46895 * 111.00160 * 183.19300 * 16 15 5 18 18 C 1.46951 * 110.87812 * 59.32140 * 16 15 5 19 19 C 1.46950 * 111.00045 * 101.37195 * 4 2 1 20 20 C 1.52991 * 109.49019 * 296.77604 * 19 4 2 21 21 C 1.53000 * 109.49057 * 56.84714 * 19 4 2 22 22 H 1.09000 * 109.46711 * 322.33458 * 1 2 3 23 23 H 1.09004 * 109.46883 * 202.33993 * 1 2 3 24 24 H 1.08998 * 109.47249 * 82.33415 * 1 2 3 25 25 H 1.08998 * 109.46768 * 239.99686 * 2 1 3 26 26 H 1.08998 * 109.47074 * 168.83082 * 3 2 1 27 27 H 1.08999 * 109.47061 * 288.83777 * 3 2 1 28 28 H 1.09001 * 109.46817 * 48.83481 * 3 2 1 29 29 H 0.96997 * 119.99535 * 179.97438 * 10 9 7 30 30 H 1.08993 * 109.49315 * 61.57368 * 15 5 4 31 31 H 1.09003 * 109.48684 * 181.61458 * 15 5 4 32 32 H 1.09003 * 109.47577 * 56.04313 * 17 16 15 33 33 H 1.09000 * 109.47459 * 176.04524 * 17 16 15 34 34 H 1.09001 * 109.46946 * 296.04863 * 17 16 15 35 35 H 1.08997 * 109.49082 * 60.65113 * 18 16 15 36 36 H 1.09004 * 109.49012 * 180.69017 * 18 16 15 37 37 H 1.08996 * 109.47636 * 62.08342 * 20 19 4 38 38 H 1.09007 * 109.47420 * 182.08183 * 20 19 4 39 39 H 1.09004 * 109.47074 * 302.07963 * 20 19 4 40 40 H 1.08992 * 109.47728 * 53.00295 * 21 19 4 41 41 H 1.08999 * 109.47272 * 173.01456 * 21 19 4 42 42 H 1.09005 * 109.46600 * 293.00799 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 0.9995 -0.6989 2.2572 6 1 0.1284 -1.2599 1.9189 7 6 0.5939 0.7176 2.5730 8 1 1.1129 1.5440 2.1100 9 6 -0.4398 0.9588 3.4531 10 7 -1.0713 -0.0474 4.0173 11 14 -0.9421 2.7148 3.8451 12 1 -0.0811 3.6571 3.0863 13 1 -2.3611 2.9215 3.4594 14 1 -0.7839 2.9616 5.3009 15 6 1.5752 -1.3574 3.5133 16 7 2.0057 -2.7254 3.1926 17 6 2.4954 -3.4179 4.3920 18 6 3.0258 -2.7189 2.1348 19 6 2.4502 -2.0605 0.8787 20 6 1.2508 -2.8700 0.3821 21 6 3.5230 -2.0157 -0.2112 22 1 -0.3633 0.8135 0.6280 23 1 -0.3633 -0.9506 0.3906 24 1 -0.3634 0.1371 -1.0185 25 1 1.8933 -0.5139 -0.8900 26 1 3.1117 1.4489 0.1991 27 1 1.8483 1.8956 -0.9726 28 1 1.5234 2.0105 0.7737 29 1 -1.7982 0.1223 4.6367 30 1 2.4296 -0.7807 3.8672 31 1 0.8110 -1.3890 4.2900 32 1 1.7219 -3.4056 5.1600 33 1 2.7416 -4.4496 4.1408 34 1 3.3860 -2.9124 4.7653 35 1 3.8969 -2.1578 2.4730 36 1 3.3195 -3.7436 1.9066 37 1 0.8627 -2.4209 -0.5321 38 1 1.5626 -3.8947 0.1794 39 1 0.4723 -2.8714 1.1451 40 1 4.3220 -1.3396 0.0928 41 1 3.9305 -3.0155 -0.3613 42 1 3.0807 -1.6602 -1.1419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220418974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = 10.775092 kcal Electronic energy + Delta-G solvation = -19763.410594 eV Core-core repulsion = 17164.489673 eV Total energy + Delta-G solvation = -2598.920921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17714 -37.27329 -35.59854 -33.87588 -31.86020 -28.72705 -28.42607 -27.84976 -27.28959 -27.02317 -23.71973 -22.16516 -21.24545 -18.82202 -18.48242 -16.92123 -16.76704 -16.02249 -15.85952 -15.39125 -15.26521 -14.72856 -14.39676 -13.96747 -13.88330 -13.65609 -13.36807 -13.11066 -12.92580 -12.82922 -12.66823 -12.48733 -12.46474 -12.27267 -12.21727 -11.98269 -11.88011 -11.65024 -11.51283 -11.25869 -10.87682 -10.44218 -10.33696 -9.09099 -8.64520 -8.02950 -6.05823 1.40303 1.44409 1.53487 2.46262 3.17123 3.37297 3.40333 3.99433 4.20707 4.30566 4.33656 4.50631 4.59390 4.62670 4.69770 4.72123 4.77164 4.81876 4.87629 4.95939 4.96591 4.98887 5.03694 5.12542 5.17599 5.22303 5.27246 5.31204 5.40347 5.46813 5.58465 5.60073 5.81130 5.96848 5.99461 6.20884 6.34936 6.46157 6.66176 6.98857 7.10758 7.57896 9.04481 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.011638 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.216447 B = 2405.306144 C = 3212.117223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 C -0.135 4.135 4 N -0.532 5.532 5 C 0.227 3.773 6 H 0.000 1.000 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.013 3.987 10 N -0.920 5.920 11 Si 0.941 3.059 12 H -0.265 1.265 13 H -0.286 1.286 14 H -0.288 1.288 15 C 0.084 3.916 16 N -0.558 5.558 17 C 0.031 3.969 18 C 0.075 3.925 19 C 0.097 3.903 20 C -0.156 4.156 21 C -0.128 4.128 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.256 0.744 30 H -0.007 1.007 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.023 0.977 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -4.262 -6.954 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 C -0.192 4.192 4 N -0.257 5.257 5 C 0.120 3.880 6 H 0.018 0.982 7 C -0.541 4.541 8 H 0.095 0.905 9 C -0.185 4.185 10 N -0.561 5.561 11 Si 0.768 3.232 12 H -0.189 1.189 13 H -0.212 1.212 14 H -0.215 1.215 15 C -0.045 4.045 16 N -0.282 5.282 17 C -0.117 4.117 18 C -0.054 4.054 19 C 0.006 3.994 20 C -0.215 4.215 21 C -0.186 4.186 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.339 -4.293 -6.820 10.899 hybrid contribution -0.788 0.925 0.930 1.530 sum 6.551 -3.368 -5.889 9.431 Atomic orbital electron populations 1.22457 0.97698 1.02450 0.99716 1.21492 0.92768 0.95349 0.92158 1.21999 1.00614 0.95872 1.00757 1.62589 1.40321 1.14273 1.08507 1.19106 0.88124 0.94273 0.86522 0.98233 1.21763 1.14897 0.93239 1.24152 0.90492 1.25574 0.96835 0.99568 0.96539 1.70075 1.23627 1.31495 1.30917 0.85754 0.77875 0.81931 0.77617 1.18929 1.21233 1.21457 1.22076 0.96346 0.85516 1.00525 1.62238 1.38359 1.18069 1.09522 1.22301 0.98047 0.99098 0.92274 1.22146 0.91992 0.99875 0.91355 1.21254 0.95058 0.88522 0.94533 1.22272 0.99057 1.00269 0.99870 1.21827 0.97453 1.02451 0.96870 0.92092 0.94356 0.93465 0.90557 0.93091 0.92102 0.93198 0.93486 0.98925 0.92061 0.92736 0.89790 0.96324 0.95895 0.89325 0.93227 0.91701 0.94366 0.92478 0.90551 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.70 7.49 71.98 0.54 -6.16 16 2 C 0.09 3.35 2.00 44.91 0.09 3.44 16 3 C -0.13 -4.76 9.08 71.98 0.65 -4.11 16 4 N -0.53 -21.77 4.16 -800.90 -3.34 -25.10 16 5 C 0.23 11.11 0.92 44.17 0.04 11.15 16 6 H 0.00 0.02 4.32 -2.39 -0.01 0.01 16 7 C -0.50 -26.33 5.46 25.60 0.14 -26.19 16 8 H 0.08 4.00 4.31 -2.91 -0.01 3.99 16 9 C 0.01 0.71 5.33 84.66 0.45 1.16 16 10 N -0.92 -52.83 11.78 21.45 0.25 -52.58 16 11 Si 0.94 43.52 29.54 68.60 2.03 45.55 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.08 4.11 4.72 86.31 0.41 4.51 16 16 N -0.56 -22.60 4.32 -921.96 -3.98 -26.59 16 17 C 0.03 1.05 9.60 127.69 1.23 2.27 16 18 C 0.07 2.58 4.33 86.31 0.37 2.96 16 19 C 0.10 3.32 0.66 3.53 0.00 3.32 16 20 C -0.16 -5.38 6.84 71.98 0.49 -4.89 16 21 C -0.13 -3.41 8.14 71.98 0.59 -2.82 16 22 H 0.06 2.82 5.61 -2.39 -0.01 2.80 16 23 H 0.04 1.71 4.55 -2.39 -0.01 1.70 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 2.47 5.02 -2.39 -0.01 2.46 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.03 4.95 -2.39 -0.01 2.02 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.06 3.40 6.58 -2.39 -0.02 3.39 16 32 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.05 1.64 6.38 -2.39 -0.02 1.62 16 38 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.61 5.77 -2.38 -0.01 1.60 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.58 6.18 -2.38 -0.01 1.57 16 Total: -1.00 -58.83 295.35 0.95 -57.88 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.99 Total: 16.20 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 5.00 Total: -15.36 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -7.06 Total: -104.27 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -58.83 0.95 -57.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220418974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.657 kcal (2) G-P(sol) polarization free energy of solvation -58.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds