Wall clock time and date at job start Mon Mar 30 2020 03:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 N 1.46897 * 109.46637 * 119.99265 * 2 1 3 5 5 C 1.46961 * 111.00488 * 274.02752 * 4 2 1 6 6 H 1.08995 * 109.48686 * 296.80798 * 5 4 2 7 7 C 1.50703 * 109.48367 * 56.84577 * 5 4 2 8 8 H 1.08002 * 119.99819 * 34.13783 * 7 5 4 9 9 C 1.37875 * 119.99784 * 214.13075 * 7 5 4 10 10 N 1.31509 * 120.00326 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 119.99919 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47245 * 59.99953 * 11 9 7 13 13 H 1.48503 * 109.47227 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46841 * 299.99927 * 11 9 7 15 15 C 1.53048 * 109.36637 * 176.81375 * 5 4 2 16 16 N 1.46996 * 109.37466 * 58.40629 * 15 5 4 17 17 C 1.46907 * 111.02897 * 176.82221 * 16 15 5 18 18 C 1.46962 * 110.85607 * 300.68911 * 16 15 5 19 19 C 1.46963 * 110.99853 * 150.23194 * 4 2 1 20 20 C 1.52998 * 109.48946 * 63.21919 * 19 4 2 21 21 C 1.53003 * 109.50409 * 303.16838 * 19 4 2 22 22 H 1.08997 * 109.47796 * 318.57676 * 1 2 3 23 23 H 1.08999 * 109.46863 * 78.57508 * 1 2 3 24 24 H 1.09001 * 109.47540 * 198.57180 * 1 2 3 25 25 H 1.08994 * 109.47441 * 239.99550 * 2 1 3 26 26 H 1.09003 * 109.46843 * 179.16868 * 3 2 1 27 27 H 1.08998 * 109.46831 * 299.16141 * 3 2 1 28 28 H 1.09000 * 109.47648 * 59.16568 * 3 2 1 29 29 H 0.97000 * 120.00125 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.48734 * 178.37062 * 15 5 4 31 31 H 1.08994 * 109.49071 * 298.41475 * 15 5 4 32 32 H 1.09002 * 109.46972 * 183.78973 * 17 16 15 33 33 H 1.08998 * 109.46875 * 303.78918 * 17 16 15 34 34 H 1.09003 * 109.46855 * 63.78798 * 17 16 15 35 35 H 1.08999 * 109.48782 * 299.33870 * 18 16 15 36 36 H 1.08996 * 109.48792 * 179.28568 * 18 16 15 37 37 H 1.08996 * 109.47707 * 170.94231 * 20 19 4 38 38 H 1.09005 * 109.47271 * 290.94623 * 20 19 4 39 39 H 1.09007 * 109.47216 * 50.94289 * 20 19 4 40 40 H 1.08999 * 109.46904 * 307.84437 * 21 19 4 41 41 H 1.09001 * 109.47404 * 67.84672 * 21 19 4 42 42 H 1.08997 * 109.47100 * 187.84727 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.1043 0.2286 2.3416 6 1 2.8326 1.0101 2.1253 7 6 0.7544 0.8528 2.5852 8 1 -0.1448 0.2826 2.4043 9 6 0.6674 2.1519 3.0390 10 7 1.7623 2.8464 3.2588 11 14 -1.0058 2.9254 3.3415 12 1 -1.7374 2.1378 4.3660 13 1 -0.8273 4.3191 3.8223 14 1 -1.7830 2.9346 2.0762 15 6 2.5408 -0.5463 3.5872 16 7 3.8395 -1.1863 3.3331 17 6 4.3294 -1.8791 4.5323 18 6 3.7545 -2.1070 2.1908 19 6 3.3180 -1.3321 0.9453 20 6 4.3601 -0.2603 0.6196 21 6 3.1901 -2.2955 -0.2365 22 1 -0.3634 0.7705 0.6799 23 1 -0.3633 0.2036 -1.0073 24 1 -0.3634 -0.9741 0.3273 25 1 1.8934 -0.5139 -0.8899 26 1 3.1299 1.4426 0.0149 27 1 1.6889 1.9520 -0.8974 28 1 1.6644 1.9607 0.8824 29 1 1.7010 3.7604 3.5777 30 1 2.6322 0.1401 4.4289 31 1 1.7982 -1.3096 3.8194 32 1 5.3215 -2.2861 4.3370 33 1 4.3826 -1.1747 5.3625 34 1 3.6474 -2.6903 4.7873 35 1 3.0258 -2.8883 2.4070 36 1 4.7306 -2.5587 2.0145 37 1 5.3507 -0.7139 0.5896 38 1 4.1341 0.1835 -0.3500 39 1 4.3378 0.5133 1.3873 40 1 2.3544 -2.9736 -0.0636 41 1 3.0146 -1.7281 -1.1505 42 1 4.1102 -2.8711 -0.3372 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220419037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:49 Heat of formation + Delta-G solvation = 25.790739 kcal Electronic energy + Delta-G solvation = -19810.868571 eV Core-core repulsion = 17212.598777 eV Total energy + Delta-G solvation = -2598.269793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56634 -35.69966 -33.84216 -31.99947 -30.21301 -27.35043 -26.85460 -26.48797 -25.47705 -25.20234 -22.03027 -20.49733 -19.59237 -17.19581 -16.44372 -15.45388 -15.00748 -14.38215 -14.09725 -13.87614 -13.67116 -13.08054 -12.90100 -12.35254 -12.26999 -12.07174 -11.79559 -11.56688 -11.36220 -11.17989 -11.04532 -10.94303 -10.77051 -10.74526 -10.62074 -10.36555 -10.01683 -9.86633 -9.79722 -9.50009 -9.04075 -8.80451 -8.37615 -7.53738 -6.92658 -6.03275 -4.04763 3.29974 3.35562 3.38304 4.38210 4.72654 4.95661 5.31864 5.41494 5.67438 5.77301 5.83277 5.95746 5.99118 6.04162 6.16972 6.18258 6.23700 6.28294 6.33777 6.39719 6.49937 6.54207 6.63040 6.67490 6.75027 6.80347 6.86439 6.94936 7.05992 7.09328 7.27903 7.48534 7.70384 7.74420 7.80696 7.87737 7.99281 8.21685 8.40309 8.76144 9.09296 9.56578 11.02680 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.011316 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.825859 B = 2473.766801 C = 3143.545837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.100 3.900 3 C -0.202 4.202 4 N -0.526 5.526 5 C 0.201 3.799 6 H 0.058 0.942 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.064 3.936 10 N -0.888 5.888 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.074 3.926 16 N -0.546 5.546 17 C 0.029 3.971 18 C 0.076 3.924 19 C 0.104 3.896 20 C -0.168 4.168 21 C -0.137 4.137 22 H 0.082 0.918 23 H 0.025 0.975 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.114 0.886 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.029 0.971 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -6.733 -3.642 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.009 4.009 3 C -0.260 4.260 4 N -0.251 5.251 5 C 0.095 3.905 6 H 0.075 0.925 7 C -0.536 4.536 8 H 0.084 0.916 9 C -0.139 4.139 10 N -0.526 5.526 11 Si 0.713 3.287 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.054 4.054 16 N -0.270 5.270 17 C -0.120 4.120 18 C -0.052 4.052 19 C 0.014 3.986 20 C -0.227 4.227 21 C -0.195 4.195 22 H 0.100 0.900 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.133 0.867 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.226 -6.547 -3.555 8.119 hybrid contribution -0.830 0.438 0.265 0.975 sum 2.397 -6.109 -3.290 7.341 Atomic orbital electron populations 1.22056 0.95541 1.02708 0.99206 1.21265 0.95312 0.92708 0.91597 1.22976 1.00813 0.98591 1.03593 1.62766 1.22396 1.34259 1.05665 1.19586 0.97265 0.89409 0.84252 0.92471 1.21060 0.92376 0.96944 1.43188 0.91616 1.24945 0.96201 0.97217 0.95517 1.69931 1.26808 1.10357 1.45474 0.86762 0.84798 0.78325 0.78817 1.20252 1.21416 1.20097 1.22493 0.85380 0.96258 1.01275 1.62301 1.30340 1.30315 1.04069 1.22275 0.98818 0.97172 0.93747 1.22032 0.98598 0.93510 0.91088 1.20995 0.90365 0.94012 0.93255 1.22560 0.98078 1.00552 1.01497 1.21898 1.00870 0.99019 0.97683 0.89957 0.95616 0.93422 0.93180 0.93254 0.95558 0.86714 0.92804 0.91276 0.96369 0.92669 0.91915 0.96668 0.95252 0.92189 0.94184 0.93225 0.90466 0.92359 0.92618 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.37 37.16 0.31 -2.44 16 2 C 0.10 2.01 2.28 -67.71 -0.15 1.86 16 3 C -0.20 -4.34 7.53 37.16 0.28 -4.06 16 4 N -0.53 -11.07 4.23 -204.49 -0.86 -11.94 16 5 C 0.20 4.77 1.13 -68.81 -0.08 4.69 16 6 H 0.06 1.51 3.84 -51.93 -0.20 1.32 16 7 C -0.50 -12.61 4.77 -34.44 -0.16 -12.77 16 8 H 0.07 1.71 6.26 -52.49 -0.33 1.38 16 9 C 0.06 1.65 4.46 -17.82 -0.08 1.57 16 10 N -0.89 -24.14 12.46 55.43 0.69 -23.45 16 11 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.07 1.68 4.89 -3.75 -0.02 1.66 16 16 N -0.55 -10.80 4.45 -242.72 -1.08 -11.88 16 17 C 0.03 0.47 9.61 60.07 0.58 1.05 16 18 C 0.08 1.38 4.31 -3.77 -0.02 1.37 16 19 C 0.10 1.92 0.68 -131.54 -0.09 1.83 16 20 C -0.17 -3.12 6.52 37.16 0.24 -2.88 16 21 C -0.14 -2.12 8.06 37.16 0.30 -1.82 16 22 H 0.08 1.84 5.40 -51.93 -0.28 1.56 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.93 5.38 -51.93 -0.28 0.66 16 26 H 0.05 1.04 4.46 -51.93 -0.23 0.81 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 2.84 4.05 -51.93 -0.21 2.63 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.07 1.70 8.13 -51.93 -0.42 1.28 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 38 H 0.05 0.89 6.00 -51.93 -0.31 0.58 16 39 H 0.08 1.68 5.50 -51.93 -0.29 1.40 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.84 6.19 -51.93 -0.32 0.52 16 42 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -25.99 295.79 -7.78 -33.78 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.08 Total: 3.49 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 1.11 Total: -9.94 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.25 Total: -47.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.99 -7.78 -33.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.568 kcal (2) G-P(sol) polarization free energy of solvation -25.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds