Wall clock time and date at job start Mon Mar 30 2020 03:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 N 1.46897 * 109.46637 * 119.99265 * 2 1 3 5 5 C 1.46961 * 111.00488 * 274.02752 * 4 2 1 6 6 H 1.08995 * 109.48686 * 296.80798 * 5 4 2 7 7 C 1.50703 * 109.48367 * 56.84577 * 5 4 2 8 8 H 1.08002 * 119.99819 * 34.13783 * 7 5 4 9 9 C 1.37875 * 119.99784 * 214.13075 * 7 5 4 10 10 N 1.31509 * 120.00326 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 119.99919 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47245 * 59.99953 * 11 9 7 13 13 H 1.48503 * 109.47227 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46841 * 299.99927 * 11 9 7 15 15 C 1.53048 * 109.36637 * 176.81375 * 5 4 2 16 16 N 1.46996 * 109.37466 * 58.40629 * 15 5 4 17 17 C 1.46907 * 111.02897 * 176.82221 * 16 15 5 18 18 C 1.46962 * 110.85607 * 300.68911 * 16 15 5 19 19 C 1.46963 * 110.99853 * 150.23194 * 4 2 1 20 20 C 1.52998 * 109.48946 * 63.21919 * 19 4 2 21 21 C 1.53003 * 109.50409 * 303.16838 * 19 4 2 22 22 H 1.08997 * 109.47796 * 318.57676 * 1 2 3 23 23 H 1.08999 * 109.46863 * 78.57508 * 1 2 3 24 24 H 1.09001 * 109.47540 * 198.57180 * 1 2 3 25 25 H 1.08994 * 109.47441 * 239.99550 * 2 1 3 26 26 H 1.09003 * 109.46843 * 179.16868 * 3 2 1 27 27 H 1.08998 * 109.46831 * 299.16141 * 3 2 1 28 28 H 1.09000 * 109.47648 * 59.16568 * 3 2 1 29 29 H 0.97000 * 120.00125 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.48734 * 178.37062 * 15 5 4 31 31 H 1.08994 * 109.49071 * 298.41475 * 15 5 4 32 32 H 1.09002 * 109.46972 * 183.78973 * 17 16 15 33 33 H 1.08998 * 109.46875 * 303.78918 * 17 16 15 34 34 H 1.09003 * 109.46855 * 63.78798 * 17 16 15 35 35 H 1.08999 * 109.48782 * 299.33870 * 18 16 15 36 36 H 1.08996 * 109.48792 * 179.28568 * 18 16 15 37 37 H 1.08996 * 109.47707 * 170.94231 * 20 19 4 38 38 H 1.09005 * 109.47271 * 290.94623 * 20 19 4 39 39 H 1.09007 * 109.47216 * 50.94289 * 20 19 4 40 40 H 1.08999 * 109.46904 * 307.84437 * 21 19 4 41 41 H 1.09001 * 109.47404 * 67.84672 * 21 19 4 42 42 H 1.08997 * 109.47100 * 187.84727 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.1043 0.2286 2.3416 6 1 2.8326 1.0101 2.1253 7 6 0.7544 0.8528 2.5852 8 1 -0.1448 0.2826 2.4043 9 6 0.6674 2.1519 3.0390 10 7 1.7623 2.8464 3.2588 11 14 -1.0058 2.9254 3.3415 12 1 -1.7374 2.1378 4.3660 13 1 -0.8273 4.3191 3.8223 14 1 -1.7830 2.9346 2.0762 15 6 2.5408 -0.5463 3.5872 16 7 3.8395 -1.1863 3.3331 17 6 4.3294 -1.8791 4.5323 18 6 3.7545 -2.1070 2.1908 19 6 3.3180 -1.3321 0.9453 20 6 4.3601 -0.2603 0.6196 21 6 3.1901 -2.2955 -0.2365 22 1 -0.3634 0.7705 0.6799 23 1 -0.3633 0.2036 -1.0073 24 1 -0.3634 -0.9741 0.3273 25 1 1.8934 -0.5139 -0.8899 26 1 3.1299 1.4426 0.0149 27 1 1.6889 1.9520 -0.8974 28 1 1.6644 1.9607 0.8824 29 1 1.7010 3.7604 3.5777 30 1 2.6322 0.1401 4.4289 31 1 1.7982 -1.3096 3.8194 32 1 5.3215 -2.2861 4.3370 33 1 4.3826 -1.1747 5.3625 34 1 3.6474 -2.6903 4.7873 35 1 3.0258 -2.8883 2.4070 36 1 4.7306 -2.5587 2.0145 37 1 5.3507 -0.7139 0.5896 38 1 4.1341 0.1835 -0.3500 39 1 4.3378 0.5133 1.3873 40 1 2.3544 -2.9736 -0.0636 41 1 3.0146 -1.7281 -1.1505 42 1 4.1102 -2.8711 -0.3372 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220419037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:49 Heat of formation + Delta-G solvation = 8.891095 kcal Electronic energy + Delta-G solvation = -19811.601394 eV Core-core repulsion = 17212.598777 eV Total energy + Delta-G solvation = -2599.002617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16453 -37.27677 -35.55964 -33.74338 -31.94088 -28.89877 -28.50446 -27.87079 -27.11625 -26.94321 -23.69964 -22.14482 -21.19877 -18.81250 -18.36725 -17.02406 -16.78777 -16.03222 -15.79563 -15.40943 -15.23165 -14.69967 -14.47500 -13.86036 -13.82776 -13.77422 -13.31932 -13.09184 -12.91622 -12.80025 -12.66739 -12.55144 -12.43996 -12.29549 -12.20386 -12.04740 -11.79341 -11.53508 -11.45263 -11.16682 -10.75838 -10.62045 -10.29973 -9.10105 -8.63282 -8.02388 -6.07978 1.42886 1.44624 1.50374 2.45815 3.11792 3.32369 3.51043 4.00223 4.22526 4.32766 4.39455 4.51626 4.61213 4.62838 4.69777 4.74749 4.75925 4.85930 4.88950 4.95858 4.97155 5.00410 5.01625 5.07109 5.18986 5.24502 5.29954 5.40405 5.40759 5.51441 5.56889 5.77222 5.81297 5.94446 6.04416 6.16573 6.32664 6.44785 6.64395 7.03309 7.12931 7.56466 9.02514 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.011316 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.825859 B = 2473.766801 C = 3143.545837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 C -0.196 4.196 4 N -0.532 5.532 5 C 0.210 3.790 6 H 0.030 0.970 7 C -0.493 4.493 8 H 0.057 0.943 9 C 0.025 3.975 10 N -0.917 5.917 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.270 1.270 15 C 0.086 3.914 16 N -0.558 5.558 17 C 0.029 3.971 18 C 0.077 3.923 19 C 0.095 3.905 20 C -0.157 4.157 21 C -0.129 4.129 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.258 0.742 30 H 0.038 0.962 31 H 0.005 0.995 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -8.492 -5.007 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.009 4.009 3 C -0.254 4.254 4 N -0.257 5.257 5 C 0.103 3.897 6 H 0.047 0.953 7 C -0.532 4.532 8 H 0.075 0.925 9 C -0.174 4.174 10 N -0.557 5.557 11 Si 0.761 3.239 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.195 1.195 15 C -0.042 4.042 16 N -0.282 5.282 17 C -0.119 4.119 18 C -0.052 4.052 19 C 0.005 3.995 20 C -0.216 4.216 21 C -0.186 4.186 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.711 -8.328 -4.927 10.363 hybrid contribution -0.930 0.936 0.672 1.481 sum 2.781 -7.392 -4.255 8.971 Atomic orbital electron populations 1.21955 0.95464 1.01592 0.99972 1.21347 0.95412 0.91992 0.92159 1.22867 1.00607 0.99406 1.02560 1.62700 1.24345 1.33339 1.05285 1.19303 0.95518 0.89287 0.85630 0.95268 1.21211 0.92930 0.96925 1.42157 0.92520 1.25458 0.98497 0.97738 0.95696 1.70048 1.28335 1.10331 1.46943 0.85986 0.81865 0.77369 0.78712 1.20165 1.21620 1.19528 1.22137 0.86888 0.95417 0.99798 1.62242 1.28152 1.31832 1.05997 1.22337 1.00192 0.96991 0.92383 1.22135 1.00053 0.92878 0.90086 1.21242 0.88892 0.94440 0.94907 1.22408 0.99358 0.99592 1.00210 1.21827 1.02351 0.98395 0.96067 0.92815 0.93105 0.93470 0.90728 0.93474 0.94208 0.90115 0.93262 0.94304 0.97667 0.89872 0.92410 0.96032 0.95599 0.89286 0.92086 0.92914 0.94282 0.92409 0.92138 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.37 71.98 0.60 -4.51 16 2 C 0.10 3.86 2.28 44.92 0.10 3.96 16 3 C -0.20 -8.38 7.53 71.98 0.54 -7.83 16 4 N -0.53 -21.92 4.23 -800.86 -3.38 -25.30 16 5 C 0.21 10.12 1.13 44.17 0.05 10.17 16 6 H 0.03 1.61 3.84 -2.39 -0.01 1.60 16 7 C -0.49 -25.62 4.77 25.60 0.12 -25.50 16 8 H 0.06 3.00 6.26 -2.91 -0.02 2.98 16 9 C 0.03 1.35 4.46 84.65 0.38 1.73 16 10 N -0.92 -51.67 12.46 21.45 0.27 -51.41 16 11 Si 0.93 42.92 29.54 68.60 2.03 44.94 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.09 4.01 4.89 86.30 0.42 4.44 16 16 N -0.56 -21.59 4.45 -921.82 -4.10 -25.70 16 17 C 0.03 0.91 9.61 127.69 1.23 2.14 16 18 C 0.08 2.58 4.31 86.31 0.37 2.95 16 19 C 0.10 3.30 0.68 3.53 0.00 3.30 16 20 C -0.16 -5.55 6.52 71.98 0.47 -5.08 16 21 C -0.13 -3.49 8.06 71.98 0.58 -2.91 16 22 H 0.05 2.38 5.40 -2.39 -0.01 2.37 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.56 5.38 -2.39 -0.01 2.54 16 26 H 0.05 1.99 4.46 -2.39 -0.01 1.98 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 4.08 4.05 -2.39 -0.01 4.07 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 38 H 0.05 1.79 6.00 -2.38 -0.01 1.78 16 39 H 0.04 1.69 5.50 -2.38 -0.01 1.67 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.58 6.19 -2.39 -0.01 1.57 16 42 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 Total: -1.00 -57.06 295.79 0.66 -56.40 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.98 Total: 18.21 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.87 Total: -17.15 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -7.22 Total: -102.41 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -57.06 0.66 -56.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.295 kcal (2) G-P(sol) polarization free energy of solvation -57.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds