Wall clock time and date at job start Mon Mar 30 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00285 * 66.04624 * 4 3 2 6 6 C 1.53051 * 109.36556 * 183.19021 * 5 4 3 7 7 C 1.52997 * 109.49122 * 61.56342 * 6 5 4 8 8 C 1.52999 * 109.48995 * 181.63002 * 6 5 4 9 9 N 1.46958 * 109.36287 * 301.59490 * 6 5 4 10 10 C 1.46893 * 111.00358 * 183.19056 * 9 6 5 11 11 C 1.46954 * 110.87913 * 59.31831 * 9 6 5 12 12 C 1.46958 * 110.99901 * 189.84339 * 4 3 2 13 13 H 1.09000 * 109.48656 * 296.77739 * 12 4 3 14 14 C 1.50702 * 109.48725 * 56.84316 * 12 4 3 15 15 H 1.07999 * 120.00134 * 359.97438 * 14 12 4 16 16 C 1.37876 * 119.99750 * 180.02562 * 14 12 4 17 17 N 1.31515 * 120.00385 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99869 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47217 * 60.00297 * 18 16 14 20 20 H 1.48506 * 109.47229 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 300.00096 * 18 16 14 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.09005 * 109.48849 * 303.15415 * 5 4 3 30 30 H 1.09003 * 109.49019 * 63.21934 * 5 4 3 31 31 H 1.08989 * 109.47053 * 60.00043 * 7 6 5 32 32 H 1.09004 * 109.47016 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46793 * 299.99657 * 7 6 5 34 34 H 1.09001 * 109.47011 * 59.99904 * 8 6 5 35 35 H 1.09000 * 109.47323 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47095 * 299.99677 * 8 6 5 37 37 H 1.09004 * 109.47046 * 59.99637 * 10 9 6 38 38 H 1.08993 * 109.47575 * 179.97438 * 10 9 6 39 39 H 1.09005 * 109.46896 * 300.00483 * 10 9 6 40 40 H 1.09002 * 109.48606 * 60.65418 * 11 9 6 41 41 H 1.09007 * 109.49034 * 180.68754 * 11 9 6 42 42 H 0.96998 * 120.00029 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0351 0.8856 -1.2547 6 6 5.5629 0.8295 -1.1835 7 6 5.9871 -0.0898 -0.0364 8 6 6.1159 0.2881 -2.5033 9 7 6.0897 2.1812 -0.9489 10 6 7.5587 2.1813 -0.9495 11 6 5.5635 2.7381 0.3051 12 6 4.0358 2.7942 0.2339 13 1 3.7336 3.4490 -0.5833 14 6 3.4911 3.3274 1.5339 15 1 2.8203 2.7233 2.1267 16 6 3.8483 4.5871 1.9659 17 7 4.6639 5.3235 1.2433 18 14 3.1726 5.2485 3.5770 19 1 3.5858 4.3568 4.6903 20 1 3.7043 6.6148 3.8131 21 1 1.6901 5.2998 3.5081 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.6407 -0.1202 -1.3997 30 1 3.7329 1.5189 -2.0888 31 1 5.5947 -1.0917 -0.2097 32 1 7.0753 -0.1291 0.0143 33 1 5.5937 0.2971 0.9037 34 1 5.8143 0.9440 -3.3199 35 1 7.2040 0.2487 -2.4525 36 1 5.7235 -0.7137 -2.6779 37 1 7.9216 1.8272 -1.9145 38 1 7.9221 3.1938 -0.7743 39 1 7.9223 1.5226 -0.1608 40 1 5.8658 2.1049 1.1392 41 1 5.9583 3.7438 0.4503 42 1 4.9149 6.2098 1.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220419595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:24 Heat of formation + Delta-G solvation = 7.490738 kcal Electronic energy + Delta-G solvation = -19105.002965 eV Core-core repulsion = 16505.939625 eV Total energy + Delta-G solvation = -2599.063341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.24564 -35.83495 -33.55275 -32.16996 -31.42391 -28.01868 -27.05857 -26.56671 -24.68308 -23.93559 -22.71416 -20.39756 -19.93519 -17.48243 -16.48271 -15.31882 -15.19529 -14.46402 -14.30411 -13.86775 -13.64426 -13.50938 -13.21263 -12.79538 -12.55155 -11.99211 -11.87873 -11.70557 -11.47688 -11.42990 -11.20863 -10.96184 -10.92910 -10.70872 -10.61101 -10.52944 -10.22769 -10.13499 -10.00297 -9.86580 -9.33911 -8.83828 -8.45455 -7.38903 -7.05585 -6.02345 -4.07135 3.31432 3.36181 3.38809 4.39447 4.76415 4.94449 5.29827 5.39028 5.44984 5.52510 5.67214 5.69997 5.83134 5.92725 5.97976 6.05485 6.08296 6.15445 6.17622 6.27576 6.30431 6.33924 6.37818 6.46239 6.49019 6.54939 6.63116 6.71804 6.79993 6.88182 7.02079 7.14571 7.44030 7.62785 7.78818 8.00774 8.06732 8.20966 8.36873 8.65710 9.00868 9.57909 11.04177 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.011009 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.055530 B = 2542.796678 C = 3889.200087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.063 3.937 4 N -0.535 5.535 5 C 0.070 3.930 6 C 0.108 3.892 7 C -0.167 4.167 8 C -0.138 4.138 9 N -0.537 5.537 10 C 0.025 3.975 11 C 0.066 3.934 12 C 0.224 3.776 13 H 0.006 0.994 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.105 0.895 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -8.934 -4.296 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.065 4.065 4 N -0.259 5.259 5 C -0.059 4.059 6 C 0.017 3.983 7 C -0.226 4.226 8 C -0.196 4.196 9 N -0.262 5.262 10 C -0.124 4.124 11 C -0.061 4.061 12 C 0.117 3.883 13 H 0.024 0.976 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.123 0.877 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.133 -8.718 -4.292 9.718 hybrid contribution -0.224 0.440 0.844 0.978 sum -0.091 -8.278 -3.448 8.967 Atomic orbital electron populations 1.21724 0.96590 1.00668 1.01627 1.21573 0.94523 0.98196 1.01582 1.22008 0.88663 0.94711 1.01131 1.62202 1.06323 1.26274 1.31130 1.22058 0.93136 0.98610 0.92091 1.21007 0.94580 0.88806 0.93879 1.22303 0.99608 0.99260 1.01432 1.21878 1.00465 0.99947 0.97291 1.62523 1.06122 1.19203 1.38320 1.22337 0.89612 1.00877 0.99552 1.22489 0.97327 1.00174 0.86063 1.19212 0.90310 0.82650 0.96112 0.97624 1.21103 1.28151 0.99766 1.05594 0.91775 1.24950 0.95154 0.96751 0.97195 1.69877 1.34413 1.10645 1.37863 0.86603 0.79247 0.77898 0.83912 1.20263 1.21357 1.20311 0.93426 0.92747 0.93230 0.92989 0.91759 0.96544 0.89496 0.92005 0.95610 0.93422 0.93987 0.90456 0.92364 0.92799 0.92976 0.92507 0.92045 0.96325 0.96183 0.87688 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.92 5.86 -26.73 -0.16 -2.08 16 3 C 0.06 1.25 4.75 -3.82 -0.02 1.23 16 4 N -0.53 -11.55 3.84 -227.88 -0.87 -12.42 16 5 C 0.07 1.34 4.12 -3.77 -0.02 1.33 16 6 C 0.11 1.95 0.68 -131.54 -0.09 1.86 16 7 C -0.17 -2.93 7.65 37.16 0.28 -2.64 16 8 C -0.14 -2.05 8.14 37.16 0.30 -1.75 16 9 N -0.54 -11.13 4.73 -227.02 -1.07 -12.20 16 10 C 0.02 0.44 8.81 60.06 0.53 0.97 16 11 C 0.07 1.61 4.28 -3.77 -0.02 1.59 16 12 C 0.22 5.66 1.94 -68.81 -0.13 5.53 16 13 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 14 C -0.51 -13.67 7.80 -34.44 -0.27 -13.94 16 15 H 0.06 1.72 6.51 -52.49 -0.34 1.38 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.04 11.35 55.43 0.63 -24.41 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 29 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.75 8.14 -51.94 -0.42 0.32 16 32 H 0.04 0.68 6.48 -51.93 -0.34 0.35 16 33 H 0.08 1.57 5.94 -51.93 -0.31 1.26 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.75 6.36 -51.93 -0.33 0.42 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.88 6.25 -51.93 -0.32 0.55 16 38 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 39 H 0.02 0.32 6.39 -51.93 -0.33 -0.01 16 40 H 0.02 0.50 6.34 -51.93 -0.33 0.17 16 41 H 0.11 2.83 6.12 -51.93 -0.32 2.52 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -27.52 307.08 -8.40 -35.93 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.38 Total: 0.37 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.69 Total: -7.96 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -1.32 Total: -49.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.52 -8.40 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.419 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds