Wall clock time and date at job start Mon Mar 30 2020 03:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00285 * 66.04624 * 4 3 2 6 6 C 1.53051 * 109.36556 * 183.19021 * 5 4 3 7 7 C 1.52997 * 109.49122 * 61.56342 * 6 5 4 8 8 C 1.52999 * 109.48995 * 181.63002 * 6 5 4 9 9 N 1.46958 * 109.36287 * 301.59490 * 6 5 4 10 10 C 1.46893 * 111.00358 * 183.19056 * 9 6 5 11 11 C 1.46954 * 110.87913 * 59.31831 * 9 6 5 12 12 C 1.46958 * 110.99901 * 189.84339 * 4 3 2 13 13 H 1.09000 * 109.48656 * 296.77739 * 12 4 3 14 14 C 1.50702 * 109.48725 * 56.84316 * 12 4 3 15 15 H 1.07999 * 120.00134 * 359.97438 * 14 12 4 16 16 C 1.37876 * 119.99750 * 180.02562 * 14 12 4 17 17 N 1.31515 * 120.00385 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99869 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47217 * 60.00297 * 18 16 14 20 20 H 1.48506 * 109.47229 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 300.00096 * 18 16 14 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.09005 * 109.48849 * 303.15415 * 5 4 3 30 30 H 1.09003 * 109.49019 * 63.21934 * 5 4 3 31 31 H 1.08989 * 109.47053 * 60.00043 * 7 6 5 32 32 H 1.09004 * 109.47016 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46793 * 299.99657 * 7 6 5 34 34 H 1.09001 * 109.47011 * 59.99904 * 8 6 5 35 35 H 1.09000 * 109.47323 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47095 * 299.99677 * 8 6 5 37 37 H 1.09004 * 109.47046 * 59.99637 * 10 9 6 38 38 H 1.08993 * 109.47575 * 179.97438 * 10 9 6 39 39 H 1.09005 * 109.46896 * 300.00483 * 10 9 6 40 40 H 1.09002 * 109.48606 * 60.65418 * 11 9 6 41 41 H 1.09007 * 109.49034 * 180.68754 * 11 9 6 42 42 H 0.96998 * 120.00029 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0351 0.8856 -1.2547 6 6 5.5629 0.8295 -1.1835 7 6 5.9871 -0.0898 -0.0364 8 6 6.1159 0.2881 -2.5033 9 7 6.0897 2.1812 -0.9489 10 6 7.5587 2.1813 -0.9495 11 6 5.5635 2.7381 0.3051 12 6 4.0358 2.7942 0.2339 13 1 3.7336 3.4490 -0.5833 14 6 3.4911 3.3274 1.5339 15 1 2.8203 2.7233 2.1267 16 6 3.8483 4.5871 1.9659 17 7 4.6639 5.3235 1.2433 18 14 3.1726 5.2485 3.5770 19 1 3.5858 4.3568 4.6903 20 1 3.7043 6.6148 3.8131 21 1 1.6901 5.2998 3.5081 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.6407 -0.1202 -1.3997 30 1 3.7329 1.5189 -2.0888 31 1 5.5947 -1.0917 -0.2097 32 1 7.0753 -0.1291 0.0143 33 1 5.5937 0.2971 0.9037 34 1 5.8143 0.9440 -3.3199 35 1 7.2040 0.2487 -2.4525 36 1 5.7235 -0.7137 -2.6779 37 1 7.9216 1.8272 -1.9145 38 1 7.9221 3.1938 -0.7743 39 1 7.9223 1.5226 -0.1608 40 1 5.8658 2.1049 1.1392 41 1 5.9583 3.7438 0.4503 42 1 4.9149 6.2098 1.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220419595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:23 Heat of formation + Delta-G solvation = -10.552499 kcal Electronic energy + Delta-G solvation = -19105.785379 eV Core-core repulsion = 16505.939625 eV Total energy + Delta-G solvation = -2599.845754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87211 -37.41210 -35.41844 -33.62390 -33.17946 -29.70249 -28.63963 -27.98969 -26.24623 -25.68783 -24.29608 -22.05006 -21.53128 -19.11304 -18.51295 -17.08289 -16.78505 -16.15017 -15.84067 -15.47661 -15.25063 -15.05290 -14.78980 -14.17741 -14.06343 -13.79217 -13.29969 -13.18611 -12.91054 -12.81180 -12.74712 -12.59720 -12.51253 -12.35111 -12.09406 -12.01353 -11.93155 -11.85197 -11.65428 -11.50298 -10.99295 -10.73620 -10.51961 -9.04730 -8.84496 -8.12041 -6.24528 1.41143 1.42583 1.50326 2.40722 3.09089 3.26874 3.37300 3.97450 4.09586 4.22380 4.26472 4.34244 4.47129 4.57584 4.58441 4.67546 4.71776 4.80675 4.82473 4.85295 4.91039 4.96696 4.99675 5.03728 5.05194 5.12259 5.18656 5.24576 5.32057 5.39464 5.40319 5.53870 5.62014 5.67348 5.72128 6.16564 6.31964 6.39092 6.59192 6.78895 6.91706 7.44631 8.93494 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.011009 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.055530 B = 2542.796678 C = 3889.200087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.063 3.937 4 N -0.536 5.536 5 C 0.069 3.931 6 C 0.101 3.899 7 C -0.158 4.158 8 C -0.130 4.130 9 N -0.554 5.554 10 C 0.027 3.973 11 C 0.086 3.914 12 C 0.232 3.768 13 H -0.045 1.045 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.005 0.995 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.025 0.975 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -11.166 -4.662 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.065 4.065 4 N -0.261 5.261 5 C -0.060 4.060 6 C 0.011 3.989 7 C -0.217 4.217 8 C -0.187 4.187 9 N -0.279 5.279 10 C -0.121 4.121 11 C -0.042 4.042 12 C 0.124 3.876 13 H -0.027 1.027 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.197 1.197 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.027 0.973 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.101 -10.974 -4.670 11.926 hybrid contribution -0.223 1.119 0.901 1.454 sum -0.122 -9.855 -3.769 10.551 Atomic orbital electron populations 1.21695 0.94530 1.02359 1.01592 1.21474 0.96239 0.94895 1.02059 1.22047 0.87750 0.97416 0.99323 1.62216 1.07360 1.23672 1.32807 1.22207 0.94309 0.99358 0.90092 1.21224 0.93810 0.87627 0.96252 1.22187 1.00324 0.99949 0.99196 1.21822 1.01335 1.00974 0.94605 1.62440 1.08070 1.21363 1.35992 1.22377 0.87617 1.00682 1.01415 1.21996 0.96461 0.98268 0.87457 1.18943 0.91277 0.83733 0.93629 1.02705 1.21360 1.28260 1.00233 1.06267 0.92199 1.25725 0.95370 0.96994 1.00392 1.70028 1.35330 1.10803 1.39396 0.85605 0.78749 0.77283 0.79961 1.19648 1.20928 1.19674 0.90810 0.93225 0.92934 0.91615 0.91966 0.97697 0.91998 0.89076 0.97343 0.91034 0.92755 0.93883 0.92846 0.91324 0.90311 0.89521 0.93125 0.95637 0.97558 0.91107 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.11 -3.29 5.86 30.59 0.18 -3.11 16 3 C 0.06 2.52 4.75 86.30 0.41 2.93 16 4 N -0.54 -23.58 3.84 -874.88 -3.36 -26.94 16 5 C 0.07 2.57 4.12 86.31 0.36 2.93 16 6 C 0.10 3.49 0.68 3.53 0.00 3.49 16 7 C -0.16 -5.17 7.65 71.98 0.55 -4.62 16 8 C -0.13 -3.41 8.14 71.98 0.59 -2.82 16 9 N -0.55 -23.01 4.73 -872.15 -4.13 -27.14 16 10 C 0.03 0.93 8.81 127.69 1.12 2.05 16 11 C 0.09 4.35 4.28 86.31 0.37 4.72 16 12 C 0.23 12.29 1.94 44.17 0.09 12.37 16 13 H -0.04 -2.75 8.14 -2.39 -0.02 -2.77 16 14 C -0.52 -29.31 7.80 25.60 0.20 -29.11 16 15 H 0.06 3.33 6.51 -2.91 -0.02 3.31 16 16 C 0.01 0.81 5.30 84.65 0.45 1.26 16 17 N -0.92 -53.68 11.35 21.45 0.24 -53.43 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.81 6.49 -2.39 -0.02 1.79 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.00 0.20 8.12 -2.39 -0.02 0.18 16 28 H 0.06 2.77 5.99 -2.39 -0.01 2.75 16 29 H 0.09 2.86 6.33 -2.38 -0.02 2.85 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.63 6.48 -2.38 -0.02 1.61 16 33 H 0.04 1.71 5.94 -2.38 -0.01 1.70 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.61 6.36 -2.39 -0.02 1.60 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.44 6.25 -2.39 -0.01 2.43 16 38 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 39 H 0.03 0.83 6.39 -2.38 -0.02 0.82 16 40 H 0.01 0.33 6.34 -2.39 -0.02 0.31 16 41 H 0.07 4.03 6.12 -2.38 -0.01 4.02 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -62.41 307.08 0.78 -61.63 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.97 Total: 12.46 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.03 Total: -12.77 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -7.24 Total: -107.50 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.41 0.78 -61.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -62.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds