Wall clock time and date at job start Mon Mar 30 2020 03:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47500 * 2 1 4 4 N 1.46899 * 109.46949 * 120.00297 * 2 1 3 5 5 C 1.46961 * 111.00011 * 307.95678 * 4 2 1 6 6 C 1.53048 * 109.38505 * 183.20109 * 5 4 2 7 7 C 1.52997 * 109.48909 * 61.55444 * 6 5 4 8 8 C 1.52996 * 109.48861 * 181.60076 * 6 5 4 9 9 N 1.46958 * 109.36310 * 301.59056 * 6 5 4 10 10 C 1.46896 * 111.00126 * 183.18696 * 9 6 5 11 11 C 1.46959 * 110.88107 * 59.31927 * 9 6 5 12 12 C 1.47000 * 111.03114 * 71.74762 * 4 2 1 13 13 H 1.08997 * 109.48509 * 296.79095 * 12 4 2 14 14 C 1.50698 * 109.48182 * 56.85254 * 12 4 2 15 15 H 1.08001 * 120.00123 * 35.52885 * 14 12 4 16 16 C 1.37878 * 119.99833 * 215.52550 * 14 12 4 17 17 N 1.31515 * 119.99588 * 179.44385 * 16 14 12 18 18 Si 1.86792 * 119.99994 * 359.44567 * 16 14 12 19 19 H 1.48505 * 109.47324 * 89.92004 * 18 16 14 20 20 H 1.48498 * 109.47300 * 209.91937 * 18 16 14 21 21 H 1.48505 * 109.47580 * 329.91849 * 18 16 14 22 22 H 1.09006 * 109.47329 * 300.00183 * 1 2 3 23 23 H 1.09005 * 109.46773 * 59.99780 * 1 2 3 24 24 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46811 * 239.99913 * 2 1 3 26 26 H 1.08990 * 109.47188 * 177.79543 * 3 2 1 27 27 H 1.09000 * 109.46696 * 297.80022 * 3 2 1 28 28 H 1.08997 * 109.46613 * 57.79653 * 3 2 1 29 29 H 1.08998 * 109.48583 * 63.22118 * 5 4 2 30 30 H 1.09003 * 109.48753 * 303.18281 * 5 4 2 31 31 H 1.09004 * 109.47354 * 59.99907 * 7 6 5 32 32 H 1.09004 * 109.47422 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.47295 * 299.99973 * 7 6 5 34 34 H 1.08992 * 109.47405 * 59.99979 * 8 6 5 35 35 H 1.09005 * 109.46661 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47282 * 299.99811 * 8 6 5 37 37 H 1.09001 * 109.47230 * 59.99614 * 10 9 6 38 38 H 1.09000 * 109.47274 * 179.97438 * 10 9 6 39 39 H 1.09000 * 109.47494 * 300.00105 * 10 9 6 40 40 H 1.08998 * 109.48798 * 60.64858 * 11 9 6 41 41 H 1.08998 * 109.48833 * 180.69562 * 11 9 6 42 42 H 0.96999 * 119.99584 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.3995 -0.1447 2.4139 6 6 1.9932 -0.8360 3.6436 7 6 3.4968 -0.5605 3.7078 8 6 1.3208 -0.2958 4.9072 9 7 1.7639 -2.2843 3.5465 10 6 2.2534 -2.9764 4.7462 11 6 2.3841 -2.8326 2.3323 12 6 1.7903 -2.1413 1.1026 13 1 0.7191 -2.3376 1.0569 14 6 2.4529 -2.6730 -0.1421 15 1 3.3907 -2.2538 -0.4757 16 6 1.8621 -3.6947 -0.8548 17 7 2.4349 -4.1513 -1.9471 18 14 0.2481 -4.4304 -0.2691 19 1 -0.8845 -3.6847 -0.8746 20 1 0.1768 -5.8562 -0.6777 21 1 0.1687 -4.3350 1.2108 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1293 1.4427 0.0395 27 1 1.7093 1.9448 -0.9091 28 1 1.6449 1.9675 0.8696 29 1 0.3239 -0.3183 2.3830 30 1 1.5935 0.9265 2.4698 31 1 3.6667 0.5139 3.7778 32 1 3.9195 -1.0533 4.5834 33 1 3.9757 -0.9462 2.8077 34 1 0.2498 -0.4929 4.8615 35 1 1.7442 -0.7880 5.7828 36 1 1.4898 0.7787 4.9777 37 1 1.7292 -2.5975 5.6236 38 1 2.0708 -4.0465 4.6482 39 1 3.3231 -2.7986 4.8572 40 1 3.4597 -2.6591 2.3632 41 1 2.1899 -3.9038 2.2767 42 1 2.0194 -4.8703 -2.4483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220419689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:26 Heat of formation + Delta-G solvation = 13.375258 kcal Electronic energy + Delta-G solvation = -19536.500285 eV Core-core repulsion = 16937.692117 eV Total energy + Delta-G solvation = -2598.808169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61719 -36.36051 -33.33408 -31.87772 -31.13923 -27.85578 -27.20855 -26.51943 -26.26997 -24.07594 -23.18958 -20.69658 -19.12746 -17.50066 -16.87623 -15.56169 -15.40609 -14.31433 -14.21049 -13.98983 -13.73963 -13.32539 -13.19465 -12.85968 -12.70951 -12.31600 -12.21584 -11.84738 -11.60789 -11.44922 -11.27221 -11.10306 -11.05048 -10.78789 -10.66105 -10.49454 -10.39972 -10.15433 -9.92347 -9.74755 -9.53200 -9.05436 -8.57468 -7.66984 -7.15644 -6.10777 -4.10339 3.27055 3.36858 3.44729 4.39955 4.49219 4.78995 5.19640 5.25840 5.46935 5.54720 5.65831 5.68748 5.81702 5.84707 5.87623 5.97685 6.03009 6.12328 6.13683 6.17021 6.18364 6.27227 6.30293 6.36168 6.38106 6.40188 6.48092 6.58224 6.61023 6.71316 6.88420 6.96614 7.15112 7.27044 7.51440 7.70717 7.81592 8.08668 8.22529 8.67814 9.00563 9.53647 11.01552 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.011760 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.404673 B = 2380.456359 C = 3092.527487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 C -0.138 4.138 4 N -0.521 5.521 5 C 0.063 3.937 6 C 0.108 3.892 7 C -0.168 4.168 8 C -0.138 4.138 9 N -0.541 5.541 10 C 0.021 3.979 11 C 0.064 3.936 12 C 0.189 3.811 13 H 0.013 0.987 14 C -0.502 4.502 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.864 3.136 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.257 1.257 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 7.459 10.226 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 C -0.195 4.195 4 N -0.245 5.245 5 C -0.065 4.065 6 C 0.018 3.982 7 C -0.227 4.227 8 C -0.196 4.196 9 N -0.265 5.265 10 C -0.127 4.127 11 C -0.063 4.063 12 C 0.082 3.918 13 H 0.030 0.970 14 C -0.540 4.540 15 H 0.099 0.901 16 C -0.127 4.127 17 N -0.533 5.533 18 Si 0.692 3.308 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.181 1.181 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.245 7.306 10.072 12.643 hybrid contribution -0.926 -0.603 0.256 1.134 sum -3.171 6.703 10.328 12.714 Atomic orbital electron populations 1.22414 0.99175 1.01664 1.00520 1.21575 0.91404 0.93794 0.95927 1.21820 1.01450 0.96263 1.00001 1.62406 1.56613 1.05415 1.00082 1.22134 0.96412 0.97649 0.90350 1.21027 0.93959 0.88436 0.94743 1.22311 0.97223 1.01062 1.02083 1.21875 1.00927 1.00009 0.96775 1.62524 1.58543 1.02478 1.02994 1.22385 0.97702 0.98964 0.93693 1.22607 0.97053 0.98530 0.88129 1.19707 0.94746 0.83777 0.93566 0.96963 1.20860 1.08895 1.17808 1.06481 0.90149 1.24986 0.96993 0.96288 0.94420 1.69891 1.39513 1.27650 1.16202 0.87040 0.84754 0.78528 0.80519 1.20388 1.21548 1.18096 0.93488 0.93227 0.92699 0.87717 0.92372 0.93350 0.93889 0.94930 0.91667 0.93083 0.93894 0.90386 0.92348 0.92739 0.92700 0.92063 0.92189 0.95795 0.94267 0.91710 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.40 37.16 0.31 -2.96 16 2 C 0.08 1.59 2.74 -67.71 -0.19 1.40 16 3 C -0.14 -2.20 9.12 37.16 0.34 -1.87 16 4 N -0.52 -10.64 3.77 -219.90 -0.83 -11.47 16 5 C 0.06 1.12 3.42 -3.77 -0.01 1.11 16 6 C 0.11 1.80 0.68 -131.55 -0.09 1.71 16 7 C -0.17 -2.69 7.65 37.16 0.28 -2.40 16 8 C -0.14 -1.86 8.14 37.16 0.30 -1.56 16 9 N -0.54 -10.06 4.73 -227.01 -1.07 -11.13 16 10 C 0.02 0.32 8.81 60.06 0.53 0.85 16 11 C 0.06 1.39 4.48 -3.76 -0.02 1.38 16 12 C 0.19 4.40 1.28 -68.78 -0.09 4.31 16 13 H 0.01 0.32 4.10 -51.93 -0.21 0.10 16 14 C -0.50 -13.51 7.34 -34.44 -0.25 -13.76 16 15 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 18 Si 0.86 21.36 26.74 -169.99 -4.55 16.81 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 22 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 1.14 6.83 -51.93 -0.35 0.78 16 25 H 0.10 2.39 6.60 -51.93 -0.34 2.05 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.63 6.65 -51.93 -0.35 0.28 16 29 H 0.03 0.61 6.41 -51.93 -0.33 0.28 16 30 H 0.07 1.05 6.45 -51.93 -0.34 0.72 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.63 6.48 -51.93 -0.34 0.30 16 33 H 0.08 1.46 5.94 -51.93 -0.31 1.15 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.83 6.25 -51.93 -0.32 0.50 16 38 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 39 H 0.02 0.36 6.39 -51.93 -0.33 0.03 16 40 H 0.04 0.87 6.34 -51.93 -0.33 0.54 16 41 H 0.06 1.47 7.61 -51.93 -0.40 1.08 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -28.32 299.63 -7.30 -35.62 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.16 Total: 1.23 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 1.02 Total: -9.77 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.13 Total: -48.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.55 Total: 16.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.32 -7.30 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.991 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds