Wall clock time and date at job start Mon Mar 30 2020 03:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47500 * 2 1 4 4 N 1.46899 * 109.46949 * 120.00297 * 2 1 3 5 5 C 1.46961 * 111.00011 * 307.95678 * 4 2 1 6 6 C 1.53048 * 109.38505 * 183.20109 * 5 4 2 7 7 C 1.52997 * 109.48909 * 61.55444 * 6 5 4 8 8 C 1.52996 * 109.48861 * 181.60076 * 6 5 4 9 9 N 1.46958 * 109.36310 * 301.59056 * 6 5 4 10 10 C 1.46896 * 111.00126 * 183.18696 * 9 6 5 11 11 C 1.46959 * 110.88107 * 59.31927 * 9 6 5 12 12 C 1.47000 * 111.03114 * 71.74762 * 4 2 1 13 13 H 1.08997 * 109.48509 * 296.79095 * 12 4 2 14 14 C 1.50698 * 109.48182 * 56.85254 * 12 4 2 15 15 H 1.08001 * 120.00123 * 35.52885 * 14 12 4 16 16 C 1.37878 * 119.99833 * 215.52550 * 14 12 4 17 17 N 1.31515 * 119.99588 * 179.44385 * 16 14 12 18 18 Si 1.86792 * 119.99994 * 359.44567 * 16 14 12 19 19 H 1.48505 * 109.47324 * 89.92004 * 18 16 14 20 20 H 1.48498 * 109.47300 * 209.91937 * 18 16 14 21 21 H 1.48505 * 109.47580 * 329.91849 * 18 16 14 22 22 H 1.09006 * 109.47329 * 300.00183 * 1 2 3 23 23 H 1.09005 * 109.46773 * 59.99780 * 1 2 3 24 24 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46811 * 239.99913 * 2 1 3 26 26 H 1.08990 * 109.47188 * 177.79543 * 3 2 1 27 27 H 1.09000 * 109.46696 * 297.80022 * 3 2 1 28 28 H 1.08997 * 109.46613 * 57.79653 * 3 2 1 29 29 H 1.08998 * 109.48583 * 63.22118 * 5 4 2 30 30 H 1.09003 * 109.48753 * 303.18281 * 5 4 2 31 31 H 1.09004 * 109.47354 * 59.99907 * 7 6 5 32 32 H 1.09004 * 109.47422 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.47295 * 299.99973 * 7 6 5 34 34 H 1.08992 * 109.47405 * 59.99979 * 8 6 5 35 35 H 1.09005 * 109.46661 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47282 * 299.99811 * 8 6 5 37 37 H 1.09001 * 109.47230 * 59.99614 * 10 9 6 38 38 H 1.09000 * 109.47274 * 179.97438 * 10 9 6 39 39 H 1.09000 * 109.47494 * 300.00105 * 10 9 6 40 40 H 1.08998 * 109.48798 * 60.64858 * 11 9 6 41 41 H 1.08998 * 109.48833 * 180.69562 * 11 9 6 42 42 H 0.96999 * 119.99584 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.3995 -0.1447 2.4139 6 6 1.9932 -0.8360 3.6436 7 6 3.4968 -0.5605 3.7078 8 6 1.3208 -0.2958 4.9072 9 7 1.7639 -2.2843 3.5465 10 6 2.2534 -2.9764 4.7462 11 6 2.3841 -2.8326 2.3323 12 6 1.7903 -2.1413 1.1026 13 1 0.7191 -2.3376 1.0569 14 6 2.4529 -2.6730 -0.1421 15 1 3.3907 -2.2538 -0.4757 16 6 1.8621 -3.6947 -0.8548 17 7 2.4349 -4.1513 -1.9471 18 14 0.2481 -4.4304 -0.2691 19 1 -0.8845 -3.6847 -0.8746 20 1 0.1768 -5.8562 -0.6777 21 1 0.1687 -4.3350 1.2108 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1293 1.4427 0.0395 27 1 1.7093 1.9448 -0.9091 28 1 1.6449 1.9675 0.8696 29 1 0.3239 -0.3183 2.3830 30 1 1.5935 0.9265 2.4698 31 1 3.6667 0.5139 3.7778 32 1 3.9195 -1.0533 4.5834 33 1 3.9757 -0.9462 2.8077 34 1 0.2498 -0.4929 4.8615 35 1 1.7442 -0.7880 5.7828 36 1 1.4898 0.7787 4.9777 37 1 1.7292 -2.5975 5.6236 38 1 2.0708 -4.0465 4.6482 39 1 3.3231 -2.7986 4.8572 40 1 3.4597 -2.6591 2.3632 41 1 2.1899 -3.9038 2.2767 42 1 2.0194 -4.8703 -2.4483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220419689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:26 Heat of formation + Delta-G solvation = -6.617064 kcal Electronic energy + Delta-G solvation = -19537.367218 eV Core-core repulsion = 16937.692117 eV Total energy + Delta-G solvation = -2599.675101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11364 -37.84767 -35.22107 -33.56640 -32.71586 -29.51459 -28.48274 -27.92930 -27.66166 -25.79881 -24.67053 -22.39637 -20.66374 -19.09397 -18.92181 -17.14219 -16.78774 -16.12690 -15.84461 -15.43694 -15.18374 -14.83976 -14.80187 -14.59547 -14.15549 -13.87676 -13.54513 -13.15540 -13.01684 -12.92039 -12.67839 -12.65406 -12.46061 -12.37328 -12.13661 -11.98627 -11.90165 -11.75002 -11.72471 -11.60624 -11.09171 -10.91182 -10.68626 -9.12704 -8.79141 -8.30494 -6.32235 1.27137 1.31794 1.44253 2.30660 2.94658 3.16559 3.34474 3.94767 4.10055 4.23472 4.27219 4.36724 4.40313 4.52279 4.57737 4.61644 4.70333 4.74953 4.80151 4.83597 4.85278 4.92596 4.96748 4.98277 5.01263 5.05247 5.06644 5.17932 5.23127 5.27815 5.34402 5.51826 5.55314 5.61014 5.64799 6.13039 6.25121 6.30798 6.56145 6.74223 6.83792 7.34919 8.86021 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.011760 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.404673 B = 2380.456359 C = 3092.527487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 C -0.126 4.126 4 N -0.529 5.529 5 C 0.063 3.937 6 C 0.102 3.898 7 C -0.160 4.160 8 C -0.130 4.130 9 N -0.551 5.551 10 C 0.021 3.979 11 C 0.075 3.925 12 C 0.197 3.803 13 H -0.001 1.001 14 C -0.491 4.491 15 H 0.036 0.964 16 C 0.025 3.975 17 N -0.942 5.942 18 Si 0.925 3.075 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.249 1.249 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.047 0.953 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 9.255 12.974 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.032 4.032 3 C -0.184 4.184 4 N -0.253 5.253 5 C -0.065 4.065 6 C 0.012 3.988 7 C -0.219 4.219 8 C -0.187 4.187 9 N -0.275 5.275 10 C -0.127 4.127 11 C -0.054 4.054 12 C 0.089 3.911 13 H 0.017 0.983 14 C -0.531 4.531 15 H 0.054 0.946 16 C -0.174 4.174 17 N -0.582 5.582 18 Si 0.750 3.250 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.173 1.173 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.606 9.122 12.846 16.163 hybrid contribution -0.420 -1.077 -0.598 1.301 sum -4.026 8.046 12.248 15.197 Atomic orbital electron populations 1.22329 0.97955 1.00220 1.02473 1.21565 0.92436 0.95397 0.93841 1.21709 1.00915 0.93776 1.01956 1.62335 1.57468 1.03762 1.01736 1.22272 0.95882 0.99001 0.89347 1.21236 0.94616 0.87095 0.95858 1.22211 0.96549 1.02212 1.00897 1.21817 1.00446 1.01387 0.95087 1.62469 1.58405 1.04011 1.02665 1.22460 0.98328 0.98778 0.93096 1.22231 0.96260 0.97391 0.89485 1.19459 0.93274 0.85884 0.92482 0.98310 1.20960 1.07150 1.17105 1.07841 0.94569 1.25670 1.00227 0.96927 0.94534 1.70023 1.41446 1.28867 1.17873 0.86067 0.80859 0.77694 0.80347 1.19928 1.21214 1.17265 0.91247 0.91505 0.95767 0.92365 0.93152 0.91625 0.91613 0.95499 0.89226 0.91233 0.92587 0.93906 0.92463 0.91316 0.90488 0.89311 0.92412 0.95308 0.95587 0.93474 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.05 8.40 71.98 0.60 -5.44 16 2 C 0.08 2.96 2.74 44.92 0.12 3.09 16 3 C -0.13 -3.79 9.12 71.98 0.66 -3.13 16 4 N -0.53 -21.49 3.77 -849.64 -3.21 -24.70 16 5 C 0.06 2.07 3.42 86.31 0.29 2.37 16 6 C 0.10 3.06 0.68 3.53 0.00 3.06 16 7 C -0.16 -4.71 7.65 71.98 0.55 -4.15 16 8 C -0.13 -2.88 8.14 71.98 0.59 -2.30 16 9 N -0.55 -19.43 4.73 -872.14 -4.13 -23.56 16 10 C 0.02 0.60 8.81 127.69 1.12 1.72 16 11 C 0.07 3.26 4.48 86.31 0.39 3.65 16 12 C 0.20 9.34 1.28 44.17 0.06 9.40 16 13 H 0.00 -0.03 4.10 -2.39 -0.01 -0.04 16 14 C -0.49 -27.86 7.34 25.60 0.19 -27.67 16 15 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 16 C 0.02 1.43 5.47 84.65 0.46 1.90 16 17 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 18 Si 0.93 45.37 26.74 68.60 1.83 47.21 16 19 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.25 -11.78 6.53 99.48 0.65 -11.13 16 22 H 0.07 2.12 6.39 -2.38 -0.02 2.11 16 23 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.02 0.98 6.83 -2.39 -0.02 0.96 16 25 H 0.06 2.79 6.60 -2.38 -0.02 2.77 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.68 6.65 -2.39 -0.02 1.66 16 29 H 0.03 0.93 6.41 -2.39 -0.02 0.91 16 30 H 0.09 2.51 6.45 -2.39 -0.02 2.50 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.48 6.48 -2.38 -0.02 1.47 16 33 H 0.04 1.56 5.94 -2.38 -0.01 1.55 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.35 6.37 -2.38 -0.02 1.34 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 2.03 6.25 -2.39 -0.01 2.02 16 38 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 39 H 0.03 0.79 6.39 -2.39 -0.02 0.77 16 40 H 0.03 1.18 6.34 -2.39 -0.02 1.17 16 41 H 0.05 2.17 7.61 -2.39 -0.02 2.15 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -64.40 299.63 0.76 -63.65 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.92 Total: 13.16 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.04 Total: -17.52 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -7.04 Total: -106.50 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.83 Total: 47.21 kcal Total: -64.40 0.76 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220419689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.030 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds