Wall clock time and date at job start Mon Mar 30 2020 03:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 H 1.08999 * 109.46721 * 57.74237 * 3 2 1 5 5 C 1.52996 * 109.46907 * 177.74171 * 3 2 1 6 6 N 1.46897 * 109.47029 * 297.74524 * 3 2 1 7 7 C 1.44251 * 111.00013 * 174.30634 * 6 3 2 8 8 C 1.54257 * 108.63964 * 219.84242 * 7 6 3 9 9 C 1.46132 * 111.90559 * 281.38058 * 8 7 6 10 10 N 1.48104 * 112.19408 * 60.86137 * 9 8 7 11 11 C 1.46904 * 110.99737 * 156.49405 * 10 9 8 12 12 C 1.44254 * 109.98216 * 279.72598 * 10 9 8 13 13 H 1.08992 * 108.86697 * 333.10431 * 12 10 9 14 14 C 1.50703 * 108.86341 * 214.69114 * 12 10 9 15 15 H 1.08002 * 120.00135 * 302.61969 * 14 12 10 16 16 C 1.37874 * 119.99808 * 122.62287 * 14 12 10 17 17 N 1.31510 * 120.00519 * 354.63358 * 16 14 12 18 18 Si 1.86808 * 119.99967 * 174.63308 * 16 14 12 19 19 H 1.48504 * 109.47068 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47097 * 119.99703 * 18 16 14 21 21 H 1.48501 * 109.46950 * 240.00105 * 18 16 14 22 22 C 1.48207 * 110.99705 * 302.53792 * 6 3 2 23 23 H 1.08994 * 109.47468 * 185.08575 * 1 2 3 24 24 H 1.08993 * 109.47474 * 305.09471 * 1 2 3 25 25 H 1.09011 * 109.46751 * 65.08870 * 1 2 3 26 26 H 1.08992 * 109.47318 * 239.99469 * 2 1 3 27 27 H 1.09002 * 109.46706 * 119.99561 * 2 1 3 28 28 H 1.08997 * 109.47249 * 299.99584 * 5 3 2 29 29 H 1.08996 * 109.47108 * 59.99753 * 5 3 2 30 30 H 1.09002 * 109.46793 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.61168 * 100.09899 * 7 6 3 32 32 H 1.08995 * 109.60744 * 339.58777 * 7 6 3 33 33 H 1.09000 * 108.99265 * 160.75335 * 8 7 6 34 34 H 1.09001 * 108.92537 * 41.96032 * 8 7 6 35 35 H 1.09010 * 108.93706 * 300.16256 * 9 8 7 36 36 H 1.09000 * 108.86682 * 181.51853 * 9 8 7 37 37 H 1.08992 * 109.47132 * 66.60069 * 11 10 9 38 38 H 1.08999 * 109.46940 * 186.60387 * 11 10 9 39 39 H 1.08998 * 109.47326 * 306.60012 * 11 10 9 40 40 H 0.96997 * 120.00769 * 180.02562 * 17 16 14 41 41 H 1.09000 * 108.82050 * 312.53992 * 22 6 3 42 42 H 1.08999 * 108.82039 * 70.84066 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6440 1.9679 0.8691 5 6 3.5689 1.4428 0.0568 6 7 1.5954 2.1191 -1.2257 7 6 1.9446 3.5184 -1.1996 8 6 0.7755 4.3296 -1.7951 9 6 0.7642 4.2780 -3.2555 10 7 0.6073 2.8963 -3.7653 11 6 0.0519 2.8970 -5.1253 12 6 1.8750 2.2091 -3.7249 13 1 2.6767 2.9435 -3.8008 14 6 1.9605 1.2748 -4.9043 15 1 1.2078 0.5132 -5.0456 16 6 2.9996 1.3922 -5.8028 17 7 3.8564 2.3837 -5.6915 18 14 3.1905 0.1430 -7.1785 19 1 2.1056 -0.8667 -7.0844 20 1 3.1109 0.8349 -8.4900 21 1 4.5070 -0.5327 -7.0544 22 6 2.0652 1.3965 -2.4314 23 1 -0.3634 -1.0235 0.0911 24 1 -0.3634 0.5908 0.8408 25 1 -0.3633 0.4329 -0.9322 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8988 0.9409 0.9664 29 1 3.9649 0.9174 -0.8122 30 1 3.9323 2.4705 0.0573 31 1 2.8436 3.6823 -1.7938 32 1 2.1209 3.8323 -0.1708 33 1 0.8663 5.3683 -1.4775 34 1 -0.1638 3.9245 -1.4186 35 1 1.7012 4.6895 -3.6312 36 1 -0.0617 4.8868 -3.6233 37 1 0.7741 3.3374 -5.8125 38 1 -0.1625 1.8728 -5.4306 39 1 -0.8682 3.4811 -5.1417 40 1 4.5872 2.4666 -6.3238 41 1 3.1240 1.1663 -2.3132 42 1 1.5118 0.4615 -2.5189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220420179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:09 Heat of formation + Delta-G solvation = 9.407642 kcal Electronic energy + Delta-G solvation = -19207.226959 eV Core-core repulsion = 16608.246741 eV Total energy + Delta-G solvation = -2598.980218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.92995 -36.42718 -33.48551 -32.29371 -31.01274 -29.40241 -27.35906 -25.92123 -24.08495 -23.57500 -22.70903 -20.41119 -19.39708 -18.16613 -16.47571 -15.74620 -15.21716 -14.51838 -14.06220 -14.02562 -13.57011 -13.23800 -13.13150 -12.81775 -12.45906 -12.26850 -12.12251 -11.65496 -11.30471 -11.25071 -11.02867 -10.95092 -10.85243 -10.65719 -10.42682 -10.33049 -10.20117 -10.00887 -9.86109 -9.71553 -9.41290 -8.86628 -8.59854 -7.25639 -6.78735 -6.11951 -4.14344 3.23597 3.32706 3.37262 4.34598 4.62553 5.14735 5.21205 5.35930 5.47162 5.56149 5.70613 5.75599 5.80378 5.92073 6.05921 6.12179 6.15524 6.29149 6.34071 6.36704 6.45446 6.48424 6.50100 6.58698 6.65491 6.70763 6.79215 6.84739 6.89012 6.94166 7.07896 7.20259 7.36583 7.72762 7.77314 7.91483 8.04285 8.19892 8.59753 8.78915 9.05196 9.50470 10.96035 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.009135 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.449921 B = 3064.339710 C = 3543.684235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.086 3.914 4 H 0.069 0.931 5 C -0.188 4.188 6 N -0.535 5.535 7 C 0.073 3.927 8 C -0.103 4.103 9 C 0.056 3.944 10 N -0.523 5.523 11 C 0.062 3.938 12 C 0.188 3.812 13 H 0.046 0.954 14 C -0.511 4.511 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.087 3.913 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.046 0.954 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.022 0.978 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 0.327 8.938 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.023 4.023 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.258 5.258 7 C -0.056 4.056 8 C -0.141 4.141 9 C -0.072 4.072 10 N -0.248 5.248 11 C -0.086 4.086 12 C 0.081 3.919 13 H 0.064 0.936 14 C -0.551 4.551 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.040 4.040 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.072 0.137 9.133 10.000 hybrid contribution 1.842 -0.165 -1.307 2.264 sum -2.231 -0.028 7.826 8.137 Atomic orbital electron populations 1.21609 0.95346 0.99766 1.02888 1.21567 0.96782 0.95720 1.01210 1.21739 0.91957 0.95150 0.93490 0.91320 1.22515 0.98747 1.01616 1.01785 1.60765 1.62008 1.01288 1.01785 1.21621 0.96599 0.89001 0.98419 1.20533 0.99877 0.97429 0.96301 1.20980 0.98862 0.91935 0.95467 1.61831 1.29372 1.11755 1.21846 1.21936 0.95650 1.01005 0.90029 1.19322 0.87414 0.94096 0.91093 0.93644 1.21195 1.09544 1.16429 1.07919 0.92130 1.25005 0.95791 0.95201 0.97688 1.69914 1.15922 1.29948 1.37312 0.86549 0.78159 0.81629 0.81799 1.19473 1.21047 1.20961 1.22725 0.95859 0.97382 0.88023 0.94306 0.93750 0.90821 0.91602 0.93003 0.93145 0.91881 0.93082 0.94571 0.93108 0.93323 0.91168 0.95876 0.93513 0.96019 0.91512 0.95695 0.92868 0.95981 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.71 37.16 0.36 -1.65 16 2 C -0.12 -1.71 5.07 -26.73 -0.14 -1.85 16 3 C 0.09 1.34 2.18 -67.71 -0.15 1.20 16 4 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 5 C -0.19 -2.87 8.72 37.16 0.32 -2.54 16 6 N -0.53 -9.89 3.55 -226.28 -0.80 -10.69 16 7 C 0.07 1.30 4.36 -4.58 -0.02 1.28 16 8 C -0.10 -1.79 5.66 -29.33 -0.17 -1.96 16 9 C 0.06 1.12 5.01 -6.42 -0.03 1.09 16 10 N -0.52 -11.81 4.65 -240.80 -1.12 -12.93 16 11 C 0.06 1.37 8.43 60.07 0.51 1.88 16 12 C 0.19 4.63 2.07 -69.79 -0.14 4.49 16 13 H 0.05 1.28 5.27 -51.93 -0.27 1.00 16 14 C -0.51 -13.55 5.73 -34.44 -0.20 -13.75 16 15 H 0.06 1.63 7.16 -52.49 -0.38 1.25 16 16 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 17 N -0.89 -25.36 12.59 55.43 0.70 -24.66 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.09 1.90 4.18 -2.62 -0.01 1.89 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.25 7.82 -51.92 -0.41 0.85 16 26 H 0.07 1.09 6.48 -51.93 -0.34 0.75 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.08 6.21 -51.93 -0.32 0.76 16 30 H 0.05 0.78 7.25 -51.93 -0.38 0.40 16 31 H 0.04 0.74 6.96 -51.93 -0.36 0.38 16 32 H 0.05 0.80 7.29 -51.93 -0.38 0.42 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 35 H 0.02 0.51 7.38 -51.92 -0.38 0.13 16 36 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 37 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 38 H 0.07 1.52 6.55 -51.93 -0.34 1.18 16 39 H 0.02 0.48 7.89 -51.93 -0.41 0.07 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.51 5.82 -51.93 -0.30 0.21 16 42 H 0.06 1.38 6.67 -51.93 -0.35 1.03 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -27.24 307.63 -8.88 -36.12 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.50 Total: -0.16 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.24 Total: -8.24 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.23 Total: -48.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.24 -8.88 -36.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.528 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds