Wall clock time and date at job start Mon Mar 30 2020 03:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 H 1.08999 * 109.46721 * 57.74237 * 3 2 1 5 5 C 1.52996 * 109.46907 * 177.74171 * 3 2 1 6 6 N 1.46897 * 109.47029 * 297.74524 * 3 2 1 7 7 C 1.44251 * 111.00013 * 174.30634 * 6 3 2 8 8 C 1.54257 * 108.63964 * 219.84242 * 7 6 3 9 9 C 1.46132 * 111.90559 * 281.38058 * 8 7 6 10 10 N 1.48104 * 112.19408 * 60.86137 * 9 8 7 11 11 C 1.46904 * 110.99737 * 156.49405 * 10 9 8 12 12 C 1.44254 * 109.98216 * 279.72598 * 10 9 8 13 13 H 1.08992 * 108.86697 * 333.10431 * 12 10 9 14 14 C 1.50703 * 108.86341 * 214.69114 * 12 10 9 15 15 H 1.08002 * 120.00135 * 302.61969 * 14 12 10 16 16 C 1.37874 * 119.99808 * 122.62287 * 14 12 10 17 17 N 1.31510 * 120.00519 * 354.63358 * 16 14 12 18 18 Si 1.86808 * 119.99967 * 174.63308 * 16 14 12 19 19 H 1.48504 * 109.47068 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47097 * 119.99703 * 18 16 14 21 21 H 1.48501 * 109.46950 * 240.00105 * 18 16 14 22 22 C 1.48207 * 110.99705 * 302.53792 * 6 3 2 23 23 H 1.08994 * 109.47468 * 185.08575 * 1 2 3 24 24 H 1.08993 * 109.47474 * 305.09471 * 1 2 3 25 25 H 1.09011 * 109.46751 * 65.08870 * 1 2 3 26 26 H 1.08992 * 109.47318 * 239.99469 * 2 1 3 27 27 H 1.09002 * 109.46706 * 119.99561 * 2 1 3 28 28 H 1.08997 * 109.47249 * 299.99584 * 5 3 2 29 29 H 1.08996 * 109.47108 * 59.99753 * 5 3 2 30 30 H 1.09002 * 109.46793 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.61168 * 100.09899 * 7 6 3 32 32 H 1.08995 * 109.60744 * 339.58777 * 7 6 3 33 33 H 1.09000 * 108.99265 * 160.75335 * 8 7 6 34 34 H 1.09001 * 108.92537 * 41.96032 * 8 7 6 35 35 H 1.09010 * 108.93706 * 300.16256 * 9 8 7 36 36 H 1.09000 * 108.86682 * 181.51853 * 9 8 7 37 37 H 1.08992 * 109.47132 * 66.60069 * 11 10 9 38 38 H 1.08999 * 109.46940 * 186.60387 * 11 10 9 39 39 H 1.08998 * 109.47326 * 306.60012 * 11 10 9 40 40 H 0.96997 * 120.00769 * 180.02562 * 17 16 14 41 41 H 1.09000 * 108.82050 * 312.53992 * 22 6 3 42 42 H 1.08999 * 108.82039 * 70.84066 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6440 1.9679 0.8691 5 6 3.5689 1.4428 0.0568 6 7 1.5954 2.1191 -1.2257 7 6 1.9446 3.5184 -1.1996 8 6 0.7755 4.3296 -1.7951 9 6 0.7642 4.2780 -3.2555 10 7 0.6073 2.8963 -3.7653 11 6 0.0519 2.8970 -5.1253 12 6 1.8750 2.2091 -3.7249 13 1 2.6767 2.9435 -3.8008 14 6 1.9605 1.2748 -4.9043 15 1 1.2078 0.5132 -5.0456 16 6 2.9996 1.3922 -5.8028 17 7 3.8564 2.3837 -5.6915 18 14 3.1905 0.1430 -7.1785 19 1 2.1056 -0.8667 -7.0844 20 1 3.1109 0.8349 -8.4900 21 1 4.5070 -0.5327 -7.0544 22 6 2.0652 1.3965 -2.4314 23 1 -0.3634 -1.0235 0.0911 24 1 -0.3634 0.5908 0.8408 25 1 -0.3633 0.4329 -0.9322 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8988 0.9409 0.9664 29 1 3.9649 0.9174 -0.8122 30 1 3.9323 2.4705 0.0573 31 1 2.8436 3.6823 -1.7938 32 1 2.1209 3.8323 -0.1708 33 1 0.8663 5.3683 -1.4775 34 1 -0.1638 3.9245 -1.4186 35 1 1.7012 4.6895 -3.6312 36 1 -0.0617 4.8868 -3.6233 37 1 0.7741 3.3374 -5.8125 38 1 -0.1625 1.8728 -5.4306 39 1 -0.8682 3.4811 -5.1417 40 1 4.5872 2.4666 -6.3238 41 1 3.1240 1.1663 -2.3132 42 1 1.5118 0.4615 -2.5189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220420179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:09 Heat of formation + Delta-G solvation = -7.904784 kcal Electronic energy + Delta-G solvation = -19207.977682 eV Core-core repulsion = 16608.246741 eV Total energy + Delta-G solvation = -2599.730941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51114 -38.02011 -35.24385 -33.94485 -32.70125 -30.79136 -29.01892 -27.77737 -25.73726 -25.27760 -24.09529 -21.89995 -21.08099 -19.75308 -18.49249 -17.26297 -17.00444 -16.23932 -15.74099 -15.51285 -15.13145 -14.79887 -14.53475 -14.34738 -14.13424 -13.87925 -13.72687 -13.11381 -12.95489 -12.85708 -12.65496 -12.61940 -12.49971 -12.19432 -12.02422 -11.89084 -11.65752 -11.55666 -11.38962 -11.25593 -11.09640 -10.85609 -10.67666 -8.84080 -8.63388 -8.20810 -6.28977 1.34764 1.37809 1.49570 2.36513 2.98451 3.29319 3.59132 3.96550 4.11090 4.18887 4.31914 4.43602 4.54464 4.60680 4.68870 4.73233 4.75856 4.80291 4.85457 4.87695 4.97209 4.99299 5.08374 5.10241 5.14370 5.23203 5.24053 5.30356 5.35263 5.44602 5.56188 5.60222 5.62925 5.66669 5.80205 6.01129 6.45215 6.61683 6.67608 6.90891 7.01783 7.39521 8.87384 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.009135 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.449921 B = 3064.339710 C = 3543.684235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.093 0.907 5 C -0.182 4.182 6 N -0.533 5.533 7 C 0.073 3.927 8 C -0.098 4.098 9 C 0.058 3.942 10 N -0.525 5.525 11 C 0.069 3.931 12 C 0.194 3.806 13 H 0.005 0.995 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.018 3.982 17 N -0.927 5.927 18 Si 0.952 3.048 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.106 3.894 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.003 0.997 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.075 0.925 35 H -0.006 1.006 36 H 0.067 0.933 37 H -0.009 1.009 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.261 0.739 41 H 0.001 0.999 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 0.128 10.712 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 C -0.026 4.026 4 H 0.111 0.889 5 C -0.240 4.240 6 N -0.257 5.257 7 C -0.056 4.056 8 C -0.136 4.136 9 C -0.070 4.070 10 N -0.249 5.249 11 C -0.079 4.079 12 C 0.086 3.914 13 H 0.023 0.977 14 C -0.557 4.557 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.567 5.567 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.021 4.021 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.012 0.988 36 H 0.085 0.915 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.019 0.981 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.296 -0.065 10.921 12.137 hybrid contribution 2.185 -0.065 -1.807 2.837 sum -3.110 -0.130 9.114 9.631 Atomic orbital electron populations 1.21529 0.94866 1.00670 1.01868 1.21564 0.97128 0.95082 1.01325 1.21923 0.92274 0.95770 0.92624 0.88860 1.22445 0.98379 1.01378 1.01840 1.60750 1.61769 1.01617 1.01543 1.21679 0.95487 0.88775 0.99656 1.20520 0.99681 0.99348 0.94083 1.21077 0.98123 0.90431 0.97376 1.61896 1.27911 1.13335 1.21794 1.21876 0.96127 1.00664 0.89274 1.19168 0.87048 0.93186 0.92016 0.97701 1.21401 1.09266 1.16304 1.08680 0.92778 1.25728 0.95587 0.96821 1.00031 1.70052 1.16613 1.31666 1.38391 0.85586 0.78208 0.79470 0.78952 1.18654 1.20740 1.20660 1.22270 0.94427 0.96697 0.88745 0.92994 0.92205 0.93778 0.94031 0.90321 0.90375 0.94668 0.93387 0.97908 0.89966 0.90115 0.90616 0.98817 0.91462 0.99079 0.92545 0.92371 0.92977 0.98058 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.71 71.98 0.70 -2.84 16 2 C -0.11 -3.14 5.07 30.60 0.16 -2.99 16 3 C 0.08 2.41 2.18 44.92 0.10 2.51 16 4 H 0.09 2.37 7.91 -2.39 -0.02 2.35 16 5 C -0.18 -5.30 8.72 71.98 0.63 -4.68 16 6 N -0.53 -19.32 3.55 -869.82 -3.09 -22.42 16 7 C 0.07 2.53 4.36 87.22 0.38 2.91 16 8 C -0.10 -3.22 5.66 28.91 0.16 -3.06 16 9 C 0.06 2.29 5.01 83.96 0.42 2.71 16 10 N -0.53 -23.91 4.65 -915.76 -4.26 -28.17 16 11 C 0.07 3.08 8.43 127.69 1.08 4.16 16 12 C 0.19 9.90 2.07 44.98 0.09 9.99 16 13 H 0.01 0.30 5.27 -2.39 -0.01 0.29 16 14 C -0.52 -28.31 5.73 25.60 0.15 -28.16 16 15 H 0.05 2.98 7.16 -2.91 -0.02 2.96 16 16 C 0.02 0.97 5.45 84.65 0.46 1.44 16 17 N -0.93 -54.80 12.59 21.45 0.27 -54.53 16 18 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C 0.11 4.80 4.18 86.36 0.36 5.16 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.44 7.82 -2.38 -0.02 1.42 16 26 H 0.04 1.35 6.48 -2.39 -0.02 1.34 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.21 6.21 -2.39 -0.01 1.20 16 30 H 0.05 1.41 7.25 -2.39 -0.02 1.39 16 31 H 0.00 0.11 6.96 -2.39 -0.02 0.09 16 32 H 0.08 2.34 7.29 -2.39 -0.02 2.32 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 35 H -0.01 -0.30 7.38 -2.38 -0.02 -0.31 16 36 H 0.07 2.37 7.70 -2.39 -0.02 2.35 16 37 H -0.01 -0.48 7.88 -2.39 -0.02 -0.50 16 38 H 0.06 2.59 6.55 -2.39 -0.02 2.58 16 39 H 0.06 2.18 7.89 -2.39 -0.02 2.16 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.00 0.07 5.82 -2.39 -0.01 0.05 16 42 H 0.05 2.34 6.67 -2.39 -0.02 2.33 16 Total: -1.00 -61.00 307.63 0.59 -60.41 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.96 Total: 11.63 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.68 Total: -12.85 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -7.08 Total: -105.11 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.00 0.59 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.500 kcal (2) G-P(sol) polarization free energy of solvation -60.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds