Wall clock time and date at job start Mon Mar 30 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 H 1.09001 * 109.46960 * 304.99949 * 3 2 1 5 5 C 1.52994 * 109.47120 * 185.00228 * 3 2 1 6 6 N 1.46897 * 109.47134 * 65.00189 * 3 2 1 7 7 C 1.44248 * 111.00098 * 66.04468 * 6 3 2 8 8 C 1.54251 * 108.64847 * 219.85424 * 7 6 3 9 9 C 1.46136 * 111.90226 * 281.38392 * 8 7 6 10 10 N 1.48100 * 112.19206 * 60.85929 * 9 8 7 11 11 C 1.46896 * 111.00109 * 156.48504 * 10 9 8 12 12 C 1.44255 * 109.98836 * 279.72153 * 10 9 8 13 13 H 1.08999 * 108.86690 * 333.10724 * 12 10 9 14 14 C 1.50706 * 108.86888 * 214.58748 * 12 10 9 15 15 H 1.07999 * 119.99851 * 301.45395 * 14 12 10 16 16 C 1.37872 * 120.00004 * 121.45675 * 14 12 10 17 17 N 1.31516 * 119.99963 * 6.30950 * 16 14 12 18 18 Si 1.86803 * 120.00079 * 186.31009 * 16 14 12 19 19 H 1.48502 * 109.47015 * 59.99848 * 18 16 14 20 20 H 1.48502 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46831 * 299.99766 * 18 16 14 22 22 C 1.48198 * 111.00157 * 194.29294 * 6 3 2 23 23 H 1.09009 * 109.46817 * 299.99965 * 1 2 3 24 24 H 1.08998 * 109.47360 * 59.99411 * 1 2 3 25 25 H 1.08998 * 109.47568 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47083 * 120.00115 * 2 1 3 27 27 H 1.09000 * 109.46713 * 240.00191 * 2 1 3 28 28 H 1.09001 * 109.47289 * 59.99772 * 5 3 2 29 29 H 1.08997 * 109.47712 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47264 * 300.00175 * 5 3 2 31 31 H 1.09004 * 109.60977 * 339.60049 * 7 6 3 32 32 H 1.09002 * 109.60835 * 99.93606 * 7 6 3 33 33 H 1.09002 * 108.99345 * 42.00107 * 8 7 6 34 34 H 1.09000 * 109.00276 * 160.75454 * 8 7 6 35 35 H 1.09003 * 108.94241 * 181.56272 * 9 8 7 36 36 H 1.09009 * 108.93622 * 300.16371 * 9 8 7 37 37 H 1.09007 * 109.47390 * 66.71989 * 11 10 9 38 38 H 1.09009 * 109.47293 * 186.71607 * 11 10 9 39 39 H 1.08999 * 109.47663 * 306.71605 * 11 10 9 40 40 H 0.97007 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.09000 * 108.81741 * 312.53031 * 22 6 3 42 42 H 1.08996 * 108.82531 * 70.83233 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6515 2.0993 1.2552 7 6 2.3219 1.4982 2.3822 8 6 1.3254 1.4038 3.5559 9 6 1.1613 2.6866 4.2362 10 7 0.6342 3.7354 3.3331 11 6 -0.0343 4.7987 4.0948 12 6 1.7015 4.2716 2.5242 13 1 2.6428 4.1569 3.0617 14 6 1.4483 5.7393 2.2939 15 1 0.5354 6.0610 1.8148 16 6 2.3820 6.6711 2.6946 17 7 3.5455 6.2764 3.1638 18 14 1.9946 8.4944 2.5712 19 1 0.8008 8.8038 3.3985 20 1 3.1542 9.2812 3.0624 21 1 1.7204 8.8473 1.1551 22 6 1.8186 3.5687 1.1597 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8531 0.9569 -1.0572 29 1 3.9283 2.4719 -0.1253 30 1 3.9995 0.9052 0.7160 31 1 2.6659 0.4995 2.1132 32 1 3.1742 2.1131 2.6713 33 1 0.3576 1.0783 3.1743 34 1 1.6890 0.6665 4.2717 35 1 0.4716 2.5589 5.0706 36 1 2.1280 3.0074 4.6245 37 1 0.7019 5.3338 4.6947 38 1 -0.5146 5.4929 3.4050 39 1 -0.7863 4.3588 4.7498 40 1 4.2023 6.9321 3.4461 41 1 2.7995 3.7842 0.7360 42 1 1.0544 3.9669 0.4922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220420240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:12 Heat of formation + Delta-G solvation = 9.275501 kcal Electronic energy + Delta-G solvation = -19123.226201 eV Core-core repulsion = 16524.240253 eV Total energy + Delta-G solvation = -2598.985948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.96292 -36.47624 -33.26557 -32.35883 -31.31634 -29.29506 -27.24048 -26.04611 -24.14142 -23.67428 -22.62509 -20.51746 -19.09291 -18.38859 -16.57375 -15.76367 -15.17822 -14.78369 -14.01427 -13.82956 -13.65582 -13.15943 -12.99480 -12.83531 -12.67685 -12.35824 -12.07523 -11.58502 -11.50992 -11.19271 -11.11737 -10.92928 -10.77433 -10.69389 -10.51422 -10.33289 -10.23639 -10.14228 -9.88726 -9.65939 -9.44896 -8.89797 -8.57441 -7.25678 -6.80861 -6.12371 -4.14696 3.26501 3.31666 3.34491 4.34195 4.62288 5.13198 5.14441 5.36494 5.44239 5.55461 5.64745 5.73690 5.76702 5.89463 5.98399 6.12815 6.15410 6.23214 6.28299 6.37114 6.40980 6.46391 6.49210 6.57464 6.63462 6.67095 6.76261 6.77202 6.84794 6.93395 7.07239 7.17016 7.34897 7.69728 7.77186 7.91234 8.04872 8.20433 8.58647 8.77678 9.04051 9.49888 10.95735 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.007961 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.777934 B = 3516.158028 C = 3913.297004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C 0.082 3.918 4 H 0.073 0.927 5 C -0.185 4.185 6 N -0.534 5.534 7 C 0.069 3.931 8 C -0.103 4.103 9 C 0.056 3.944 10 N -0.525 5.525 11 C 0.062 3.938 12 C 0.191 3.809 13 H 0.045 0.955 14 C -0.514 4.514 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.091 3.909 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.021 0.979 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -9.732 -2.511 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.027 4.027 4 H 0.092 0.908 5 C -0.244 4.244 6 N -0.258 5.258 7 C -0.059 4.059 8 C -0.141 4.141 9 C -0.072 4.072 10 N -0.249 5.249 11 C -0.086 4.086 12 C 0.084 3.916 13 H 0.063 0.937 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.036 4.036 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.979 -9.935 -2.675 10.712 hybrid contribution 1.495 1.628 0.332 2.235 sum -1.483 -8.307 -2.343 8.758 Atomic orbital electron populations 1.21637 0.95418 0.99936 1.02853 1.21586 0.96726 0.95913 1.00737 1.21681 0.92369 0.94840 0.93804 0.90846 1.22504 0.98580 1.02168 1.01152 1.60732 1.59028 1.05362 1.00665 1.21685 0.95048 0.97558 0.91642 1.20535 1.00440 0.96682 0.96485 1.20982 0.97593 0.93866 0.94766 1.61825 1.30666 1.11795 1.20631 1.21939 0.96371 0.94051 0.96244 1.19277 0.90760 0.91976 0.89630 0.93668 1.21122 1.04332 0.90490 1.39416 0.92203 1.25008 0.94771 0.99205 0.94641 1.69912 1.05717 1.34285 1.43124 0.86649 0.77891 0.84888 0.78640 1.19983 1.21347 1.20080 1.22656 0.97811 0.82838 1.00318 0.90893 0.93570 0.94305 0.92208 0.92892 0.93120 0.92310 0.92793 0.92531 0.94708 0.91152 0.93390 0.93496 0.95999 0.96279 0.91440 0.95599 0.92735 0.96102 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.80 37.16 0.36 -1.52 16 2 C -0.11 -1.50 5.31 -26.73 -0.14 -1.64 16 3 C 0.08 1.30 2.27 -67.72 -0.15 1.14 16 4 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 5 C -0.19 -2.80 8.71 37.15 0.32 -2.47 16 6 N -0.53 -9.93 3.52 -226.29 -0.80 -10.72 16 7 C 0.07 1.24 3.91 -4.59 -0.02 1.22 16 8 C -0.10 -1.79 5.66 -29.33 -0.17 -1.95 16 9 C 0.06 1.12 5.02 -6.42 -0.03 1.09 16 10 N -0.52 -11.84 4.65 -240.79 -1.12 -12.96 16 11 C 0.06 1.37 8.43 60.06 0.51 1.88 16 12 C 0.19 4.73 2.06 -69.79 -0.14 4.58 16 13 H 0.05 1.27 5.31 -51.93 -0.28 1.00 16 14 C -0.51 -13.71 5.69 -34.44 -0.20 -13.91 16 15 H 0.06 1.61 7.22 -52.49 -0.38 1.23 16 16 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 17 N -0.89 -25.44 12.61 55.43 0.70 -24.74 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.09 2.03 4.98 -2.62 -0.01 2.02 16 23 H 0.07 1.12 7.75 -51.92 -0.40 0.72 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.80 6.25 -51.93 -0.32 0.48 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.00 6.68 -51.93 -0.35 0.65 16 30 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 31 H 0.06 0.89 4.95 -51.93 -0.26 0.63 16 32 H 0.03 0.71 6.98 -51.93 -0.36 0.35 16 33 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 36 H 0.02 0.48 7.38 -51.92 -0.38 0.10 16 37 H 0.02 0.45 7.88 -51.92 -0.41 0.04 16 38 H 0.07 1.53 6.59 -51.92 -0.34 1.19 16 39 H 0.03 0.49 7.89 -51.93 -0.41 0.08 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.02 0.49 6.47 -51.93 -0.34 0.16 16 42 H 0.06 1.32 7.96 -51.93 -0.41 0.90 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -27.32 307.66 -8.84 -36.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.47 Total: -0.50 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.23 Total: -7.84 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.22 Total: -48.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.32 -8.84 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.439 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds