Wall clock time and date at job start Mon Mar 30 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 H 1.09001 * 109.46960 * 304.99949 * 3 2 1 5 5 C 1.52994 * 109.47120 * 185.00228 * 3 2 1 6 6 N 1.46897 * 109.47134 * 65.00189 * 3 2 1 7 7 C 1.44248 * 111.00098 * 66.04468 * 6 3 2 8 8 C 1.54251 * 108.64847 * 219.85424 * 7 6 3 9 9 C 1.46136 * 111.90226 * 281.38392 * 8 7 6 10 10 N 1.48100 * 112.19206 * 60.85929 * 9 8 7 11 11 C 1.46896 * 111.00109 * 156.48504 * 10 9 8 12 12 C 1.44255 * 109.98836 * 279.72153 * 10 9 8 13 13 H 1.08999 * 108.86690 * 333.10724 * 12 10 9 14 14 C 1.50706 * 108.86888 * 214.58748 * 12 10 9 15 15 H 1.07999 * 119.99851 * 301.45395 * 14 12 10 16 16 C 1.37872 * 120.00004 * 121.45675 * 14 12 10 17 17 N 1.31516 * 119.99963 * 6.30950 * 16 14 12 18 18 Si 1.86803 * 120.00079 * 186.31009 * 16 14 12 19 19 H 1.48502 * 109.47015 * 59.99848 * 18 16 14 20 20 H 1.48502 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46831 * 299.99766 * 18 16 14 22 22 C 1.48198 * 111.00157 * 194.29294 * 6 3 2 23 23 H 1.09009 * 109.46817 * 299.99965 * 1 2 3 24 24 H 1.08998 * 109.47360 * 59.99411 * 1 2 3 25 25 H 1.08998 * 109.47568 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47083 * 120.00115 * 2 1 3 27 27 H 1.09000 * 109.46713 * 240.00191 * 2 1 3 28 28 H 1.09001 * 109.47289 * 59.99772 * 5 3 2 29 29 H 1.08997 * 109.47712 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47264 * 300.00175 * 5 3 2 31 31 H 1.09004 * 109.60977 * 339.60049 * 7 6 3 32 32 H 1.09002 * 109.60835 * 99.93606 * 7 6 3 33 33 H 1.09002 * 108.99345 * 42.00107 * 8 7 6 34 34 H 1.09000 * 109.00276 * 160.75454 * 8 7 6 35 35 H 1.09003 * 108.94241 * 181.56272 * 9 8 7 36 36 H 1.09009 * 108.93622 * 300.16371 * 9 8 7 37 37 H 1.09007 * 109.47390 * 66.71989 * 11 10 9 38 38 H 1.09009 * 109.47293 * 186.71607 * 11 10 9 39 39 H 1.08999 * 109.47663 * 306.71605 * 11 10 9 40 40 H 0.97007 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.09000 * 108.81741 * 312.53031 * 22 6 3 42 42 H 1.08996 * 108.82531 * 70.83233 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6515 2.0993 1.2552 7 6 2.3219 1.4982 2.3822 8 6 1.3254 1.4038 3.5559 9 6 1.1613 2.6866 4.2362 10 7 0.6342 3.7354 3.3331 11 6 -0.0343 4.7987 4.0948 12 6 1.7015 4.2716 2.5242 13 1 2.6428 4.1569 3.0617 14 6 1.4483 5.7393 2.2939 15 1 0.5354 6.0610 1.8148 16 6 2.3820 6.6711 2.6946 17 7 3.5455 6.2764 3.1638 18 14 1.9946 8.4944 2.5712 19 1 0.8008 8.8038 3.3985 20 1 3.1542 9.2812 3.0624 21 1 1.7204 8.8473 1.1551 22 6 1.8186 3.5687 1.1597 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8531 0.9569 -1.0572 29 1 3.9283 2.4719 -0.1253 30 1 3.9995 0.9052 0.7160 31 1 2.6659 0.4995 2.1132 32 1 3.1742 2.1131 2.6713 33 1 0.3576 1.0783 3.1743 34 1 1.6890 0.6665 4.2717 35 1 0.4716 2.5589 5.0706 36 1 2.1280 3.0074 4.6245 37 1 0.7019 5.3338 4.6947 38 1 -0.5146 5.4929 3.4050 39 1 -0.7863 4.3588 4.7498 40 1 4.2023 6.9321 3.4461 41 1 2.7995 3.7842 0.7360 42 1 1.0544 3.9669 0.4922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220420240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:12 Heat of formation + Delta-G solvation = -8.083773 kcal Electronic energy + Delta-G solvation = -19123.978956 eV Core-core repulsion = 16524.240253 eV Total energy + Delta-G solvation = -2599.738702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53869 -38.07265 -35.10679 -33.79903 -33.08966 -30.64042 -28.93489 -27.87056 -25.87882 -25.23412 -24.04457 -21.96274 -20.87354 -19.89158 -18.53767 -17.38142 -16.76108 -16.60346 -15.62724 -15.47954 -15.24371 -14.56504 -14.39480 -14.30978 -14.15245 -14.09271 -13.71745 -13.12307 -13.01475 -12.82067 -12.68561 -12.65945 -12.50475 -12.16512 -11.99551 -11.87838 -11.75959 -11.52852 -11.50111 -11.23921 -11.05678 -10.89252 -10.64808 -8.85803 -8.65704 -8.21925 -6.30221 1.37304 1.38462 1.46327 2.36162 2.96961 3.27009 3.57508 3.94049 4.11374 4.22243 4.33026 4.38775 4.55415 4.60100 4.66482 4.69758 4.73677 4.79716 4.84596 4.89521 4.94948 5.01271 5.06543 5.07433 5.19666 5.20462 5.26908 5.27707 5.39435 5.44724 5.47867 5.57214 5.60584 5.72239 5.77467 5.99472 6.43988 6.59842 6.66683 6.89484 7.00041 7.38178 8.86173 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.007961 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.777934 B = 3516.158028 C = 3913.297004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.077 3.923 4 H 0.066 0.934 5 C -0.179 4.179 6 N -0.531 5.531 7 C 0.072 3.928 8 C -0.099 4.099 9 C 0.058 3.942 10 N -0.527 5.527 11 C 0.068 3.932 12 C 0.199 3.801 13 H 0.006 0.994 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.927 5.927 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.105 3.895 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.000 1.000 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.069 0.931 36 H -0.006 1.006 37 H -0.010 1.010 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.262 0.738 41 H -0.002 1.002 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -11.482 -2.901 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C -0.032 4.032 4 H 0.085 0.915 5 C -0.237 4.237 6 N -0.255 5.255 7 C -0.056 4.056 8 C -0.137 4.137 9 C -0.070 4.070 10 N -0.251 5.251 11 C -0.080 4.080 12 C 0.090 3.910 13 H 0.023 0.977 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.181 4.181 17 N -0.567 5.567 18 Si 0.778 3.222 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.023 4.023 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.019 0.981 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.016 0.984 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.100 -11.703 -3.071 12.775 hybrid contribution 1.824 2.110 0.449 2.825 sum -2.276 -9.593 -2.622 10.202 Atomic orbital electron populations 1.21589 0.95273 1.00961 1.01660 1.21541 0.96728 0.93664 1.02160 1.21848 0.92895 0.96380 0.92043 0.91542 1.22429 0.97952 1.00633 1.02720 1.60723 1.59243 1.03049 1.02437 1.21721 0.94051 0.98182 0.91662 1.20529 1.00629 0.95805 0.96727 1.21084 0.96526 0.94108 0.95280 1.61871 1.29774 1.12140 1.21325 1.21894 0.96213 0.93927 0.95990 1.19084 0.89551 0.91814 0.90516 0.97651 1.21358 1.03956 0.91868 1.38977 0.92712 1.25745 0.94526 1.03383 0.94448 1.70055 1.06663 1.35461 1.44482 0.85683 0.77821 0.79839 0.78895 1.19124 1.21167 1.19394 1.22262 0.95986 0.85696 0.98334 0.93113 0.93744 0.92164 0.91665 0.90464 0.90405 0.95286 0.92513 0.89570 0.98148 0.90547 0.90133 0.91288 0.98809 0.99084 0.92496 0.92199 0.92902 0.98408 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.80 71.98 0.71 -2.55 16 2 C -0.10 -2.42 5.31 30.60 0.16 -2.26 16 3 C 0.08 2.32 2.27 44.91 0.10 2.42 16 4 H 0.07 2.11 8.02 -2.39 -0.02 2.09 16 5 C -0.18 -5.21 8.71 71.98 0.63 -4.58 16 6 N -0.53 -19.57 3.52 -869.84 -3.07 -22.63 16 7 C 0.07 2.53 3.91 87.22 0.34 2.87 16 8 C -0.10 -3.23 5.66 28.91 0.16 -3.07 16 9 C 0.06 2.28 5.02 83.96 0.42 2.70 16 10 N -0.53 -23.94 4.65 -915.71 -4.26 -28.19 16 11 C 0.07 3.01 8.43 127.69 1.08 4.08 16 12 C 0.20 10.19 2.06 44.98 0.09 10.28 16 13 H 0.01 0.33 5.31 -2.39 -0.01 0.32 16 14 C -0.52 -28.73 5.69 25.60 0.15 -28.59 16 15 H 0.05 3.01 7.22 -2.91 -0.02 2.99 16 16 C 0.02 1.03 5.45 84.65 0.46 1.49 16 17 N -0.93 -54.95 12.61 21.45 0.27 -54.68 16 18 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.11 4.87 4.98 86.37 0.43 5.30 16 23 H 0.05 1.43 7.75 -2.38 -0.02 1.42 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.48 6.25 -2.39 -0.01 1.47 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.00 6.68 -2.39 -0.02 0.98 16 30 H 0.06 1.61 6.55 -2.39 -0.02 1.59 16 31 H 0.09 2.49 4.95 -2.38 -0.01 2.48 16 32 H 0.00 0.00 6.98 -2.39 -0.02 -0.01 16 33 H 0.08 2.47 8.12 -2.39 -0.02 2.46 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 36 H -0.01 -0.29 7.38 -2.38 -0.02 -0.31 16 37 H -0.01 -0.48 7.88 -2.38 -0.02 -0.50 16 38 H 0.06 2.59 6.59 -2.38 -0.02 2.58 16 39 H 0.06 2.21 7.89 -2.39 -0.02 2.19 16 40 H 0.26 14.83 8.31 -92.70 -0.77 14.05 16 41 H 0.00 -0.11 6.47 -2.39 -0.02 -0.13 16 42 H 0.04 2.14 7.96 -2.39 -0.02 2.12 16 Total: -1.00 -61.15 307.66 0.66 -60.49 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.96 Total: 11.07 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.73 Total: -11.91 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -7.05 Total: -105.51 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.15 0.66 -60.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.405 kcal (2) G-P(sol) polarization free energy of solvation -61.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds