Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46822 * 2 1 4 4 H 1.08999 * 109.46868 * 57.97200 * 3 2 1 5 5 C 1.52997 * 109.47200 * 177.96960 * 3 2 1 6 6 N 1.46894 * 109.46949 * 297.97500 * 3 2 1 7 7 C 1.40086 * 110.99891 * 310.01227 * 6 3 2 8 8 C 1.54511 * 111.51516 * 188.14648 * 7 6 3 9 9 C 1.50740 * 108.94018 * 283.98236 * 8 7 6 10 10 N 1.48068 * 112.93569 * 92.65526 * 9 8 7 11 11 C 1.46904 * 110.99669 * 192.22309 * 10 9 8 12 12 C 1.47747 * 113.78617 * 318.28316 * 10 9 8 13 13 C 1.47686 * 111.00424 * 78.64983 * 6 3 2 14 14 H 1.09000 * 109.73965 * 271.65275 * 13 6 3 15 15 C 1.50697 * 109.73559 * 32.30547 * 13 6 3 16 16 H 1.08005 * 119.99901 * 6.33054 * 15 13 6 17 17 C 1.37881 * 120.00073 * 186.32379 * 15 13 6 18 18 N 1.31512 * 119.99843 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99870 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47111 * 90.00701 * 19 17 15 21 21 H 1.48508 * 109.46844 * 210.00350 * 19 17 15 22 22 H 1.48505 * 109.47274 * 330.00015 * 19 17 15 23 23 H 1.09004 * 109.47425 * 314.31497 * 1 2 3 24 24 H 1.09000 * 109.47479 * 74.31518 * 1 2 3 25 25 H 1.09001 * 109.47171 * 194.31087 * 1 2 3 26 26 H 1.08990 * 109.47271 * 240.00117 * 2 1 3 27 27 H 1.09004 * 109.47021 * 119.99552 * 2 1 3 28 28 H 1.08992 * 109.47267 * 172.60935 * 5 3 2 29 29 H 1.08997 * 109.47461 * 292.62043 * 5 3 2 30 30 H 1.09012 * 109.46660 * 52.61118 * 5 3 2 31 31 H 1.09004 * 109.06959 * 308.67040 * 7 6 3 32 32 H 1.08994 * 109.07044 * 67.68931 * 7 6 3 33 33 H 1.09002 * 109.56016 * 43.81848 * 8 7 6 34 34 H 1.09002 * 109.56277 * 164.03423 * 8 7 6 35 35 H 1.09005 * 108.79020 * 213.54781 * 9 8 7 36 36 H 1.09005 * 108.78954 * 331.87246 * 9 8 7 37 37 H 1.08990 * 109.47501 * 63.95223 * 11 10 9 38 38 H 1.09004 * 109.46515 * 183.95253 * 11 10 9 39 39 H 1.09000 * 109.47165 * 303.95121 * 11 10 9 40 40 H 1.09001 * 108.98736 * 198.24243 * 12 10 9 41 41 H 1.09001 * 108.98984 * 79.50460 * 12 10 9 42 42 H 0.96998 * 119.99984 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6472 1.9668 0.8712 5 6 3.5691 1.4430 0.0511 6 7 1.5906 2.1207 -1.2231 7 6 1.8829 1.3540 -2.3585 8 6 1.6020 2.1384 -3.6597 9 6 0.1137 2.1780 -3.8956 10 7 -0.5293 3.3829 -3.3237 11 6 -1.9920 3.2463 -3.3175 12 6 -0.0259 3.7477 -1.9834 13 6 0.1778 2.5359 -1.1097 14 1 -0.4716 1.7272 -1.4448 15 6 -0.1375 2.8814 0.3229 16 1 0.6518 2.9019 1.0598 17 6 -1.4337 3.1715 0.6928 18 7 -2.3949 3.1462 -0.2045 19 14 -1.8245 3.6005 2.4684 20 1 -1.7045 5.0680 2.6610 21 1 -3.2097 3.1709 2.7880 22 1 -0.8702 2.9033 3.3676 23 1 -0.3634 0.7179 0.7353 24 1 -0.3634 0.2778 -0.9894 25 1 -0.3633 -0.9958 0.2540 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9367 2.4605 -0.0809 29 1 3.9005 1.0591 1.0159 30 1 3.9593 0.8094 -0.7455 31 1 2.9347 1.0688 -2.3345 32 1 1.2695 0.4531 -2.3474 33 1 1.9832 3.1550 -3.5625 34 1 2.0929 1.6432 -4.4976 35 1 -0.0723 2.1569 -4.9694 36 1 -0.3369 1.2939 -3.4444 37 1 -2.2773 2.4246 -2.6607 38 1 -2.4417 4.1718 -2.9580 39 1 -2.3420 3.0411 -4.3291 40 1 -0.7433 4.4140 -1.5044 41 1 0.9243 4.2708 -2.0917 42 1 -3.3068 3.3499 0.0558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220420779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = 29.935310 kcal Electronic energy + Delta-G solvation = -19843.846227 eV Core-core repulsion = 17245.756156 eV Total energy + Delta-G solvation = -2598.090071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50154 -36.04738 -33.38263 -32.08882 -30.54898 -29.61201 -27.47958 -25.56105 -24.70135 -22.92237 -22.49190 -20.79439 -18.79322 -18.57079 -16.31201 -15.84408 -15.01891 -14.58390 -14.36158 -13.95263 -13.72952 -12.91908 -12.76925 -12.58169 -12.31941 -11.98934 -11.81099 -11.52271 -11.20698 -11.12236 -10.93585 -10.85687 -10.73780 -10.50935 -10.47558 -10.27164 -10.12195 -9.93511 -9.78254 -9.50149 -9.32200 -8.70115 -8.45819 -7.26956 -6.78658 -6.06965 -4.09249 3.25829 3.33487 3.35507 4.35313 4.92248 5.12358 5.23824 5.56052 5.57758 5.67834 5.86599 5.88916 6.02376 6.13711 6.22611 6.25227 6.35295 6.39074 6.42924 6.47717 6.54118 6.59765 6.71672 6.71712 6.79609 6.87648 6.91367 6.96485 7.04008 7.11397 7.20671 7.46639 7.51494 7.76355 7.83776 7.95448 8.13998 8.34309 8.40273 8.84051 8.97658 9.51447 10.97313 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.013521 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.978173 B = 2070.355690 C = 3041.324086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C 0.074 3.926 4 H 0.114 0.886 5 C -0.142 4.142 6 N -0.547 5.547 7 C 0.075 3.925 8 C -0.119 4.119 9 C 0.064 3.936 10 N -0.558 5.558 11 C 0.047 3.953 12 C 0.078 3.922 13 C 0.195 3.805 14 H 0.029 0.971 15 C -0.510 4.510 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.881 5.881 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.021 0.979 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -3.377 -2.784 6.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C -0.034 4.034 4 H 0.132 0.868 5 C -0.199 4.199 6 N -0.271 5.271 7 C -0.056 4.056 8 C -0.157 4.157 9 C -0.064 4.064 10 N -0.283 5.283 11 C -0.102 4.102 12 C -0.050 4.050 13 C 0.089 3.911 14 H 0.046 0.954 15 C -0.549 4.549 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.519 5.519 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.437 -2.569 -3.180 6.802 hybrid contribution -1.003 -1.261 1.444 2.163 sum 4.434 -3.830 -1.736 6.111 Atomic orbital electron populations 1.22173 0.94792 0.99939 1.04535 1.22068 0.97458 0.98678 0.99800 1.21963 0.92911 0.92160 0.96378 0.86820 1.21886 0.97003 1.01328 0.99723 1.59290 1.23918 1.43263 1.00613 1.21001 0.99007 0.94237 0.91318 1.21536 0.95747 1.01843 0.96548 1.21698 0.94408 0.92287 0.98005 1.62241 1.05299 1.34319 1.26442 1.22107 0.87803 1.02275 0.97999 1.22081 0.98839 0.99132 0.84906 1.19702 0.81775 0.93904 0.95750 0.95351 1.21286 0.93129 1.46930 0.93514 0.91123 1.24893 0.96380 0.95478 0.97051 1.69945 1.00601 1.48451 1.32924 0.86665 0.77557 0.78803 0.85419 1.20694 1.21433 1.19965 0.88876 0.92471 0.96037 0.93735 0.93502 0.92428 0.93639 0.94100 0.92790 0.97068 0.90410 0.92317 0.93063 0.95909 0.93654 0.92127 0.95020 0.90155 0.93224 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.33 37.16 0.31 -2.93 16 2 C -0.14 -2.58 4.90 -26.73 -0.13 -2.71 16 3 C 0.07 1.41 2.37 -67.71 -0.16 1.25 16 4 H 0.11 2.43 4.59 -51.93 -0.24 2.19 16 5 C -0.14 -2.28 9.01 37.16 0.33 -1.95 16 6 N -0.55 -11.15 3.85 -225.12 -0.87 -12.02 16 7 C 0.07 1.38 3.92 -6.55 -0.03 1.35 16 8 C -0.12 -2.08 5.68 -27.07 -0.15 -2.23 16 9 C 0.06 1.22 5.01 -4.31 -0.02 1.20 16 10 N -0.56 -11.86 4.99 -243.98 -1.22 -13.08 16 11 C 0.05 0.98 8.96 60.07 0.54 1.52 16 12 C 0.08 1.80 4.51 -4.47 -0.02 1.78 16 13 C 0.19 4.46 0.69 -69.55 -0.05 4.41 16 14 H 0.03 0.74 3.50 -51.93 -0.18 0.56 16 15 C -0.51 -12.52 5.13 -34.44 -0.18 -12.70 16 16 H 0.07 1.75 5.17 -52.48 -0.27 1.48 16 17 C 0.06 1.63 4.89 -17.82 -0.09 1.54 16 18 N -0.88 -22.79 11.16 55.43 0.62 -22.17 16 19 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H 0.09 2.14 5.54 -51.93 -0.29 1.85 16 24 H 0.06 1.29 4.62 -51.93 -0.24 1.05 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.79 6.39 -51.93 -0.33 0.46 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.62 6.80 -51.92 -0.35 0.27 16 31 H 0.05 0.92 6.28 -51.93 -0.33 0.60 16 32 H 0.01 0.23 5.10 -51.93 -0.26 -0.04 16 33 H 0.08 1.46 7.19 -51.93 -0.37 1.09 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.47 6.40 -51.93 -0.33 0.14 16 37 H 0.04 1.06 7.02 -51.93 -0.36 0.70 16 38 H 0.06 1.31 7.97 -51.93 -0.41 0.90 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 2.08 6.22 -51.93 -0.32 1.76 16 41 H 0.05 1.17 7.20 -51.93 -0.37 0.79 16 42 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -24.60 289.55 -8.54 -33.13 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.77 Total: 4.17 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.36 Total: -9.47 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -1.47 Total: -47.27 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -24.60 -8.54 -33.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.067 kcal (2) G-P(sol) polarization free energy of solvation -24.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds