Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46822 * 2 1 4 4 H 1.08999 * 109.46868 * 57.97200 * 3 2 1 5 5 C 1.52997 * 109.47200 * 177.96960 * 3 2 1 6 6 N 1.46894 * 109.46949 * 297.97500 * 3 2 1 7 7 C 1.40086 * 110.99891 * 310.01227 * 6 3 2 8 8 C 1.54511 * 111.51516 * 188.14648 * 7 6 3 9 9 C 1.50740 * 108.94018 * 283.98236 * 8 7 6 10 10 N 1.48068 * 112.93569 * 92.65526 * 9 8 7 11 11 C 1.46904 * 110.99669 * 192.22309 * 10 9 8 12 12 C 1.47747 * 113.78617 * 318.28316 * 10 9 8 13 13 C 1.47686 * 111.00424 * 78.64983 * 6 3 2 14 14 H 1.09000 * 109.73965 * 271.65275 * 13 6 3 15 15 C 1.50697 * 109.73559 * 32.30547 * 13 6 3 16 16 H 1.08005 * 119.99901 * 6.33054 * 15 13 6 17 17 C 1.37881 * 120.00073 * 186.32379 * 15 13 6 18 18 N 1.31512 * 119.99843 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99870 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47111 * 90.00701 * 19 17 15 21 21 H 1.48508 * 109.46844 * 210.00350 * 19 17 15 22 22 H 1.48505 * 109.47274 * 330.00015 * 19 17 15 23 23 H 1.09004 * 109.47425 * 314.31497 * 1 2 3 24 24 H 1.09000 * 109.47479 * 74.31518 * 1 2 3 25 25 H 1.09001 * 109.47171 * 194.31087 * 1 2 3 26 26 H 1.08990 * 109.47271 * 240.00117 * 2 1 3 27 27 H 1.09004 * 109.47021 * 119.99552 * 2 1 3 28 28 H 1.08992 * 109.47267 * 172.60935 * 5 3 2 29 29 H 1.08997 * 109.47461 * 292.62043 * 5 3 2 30 30 H 1.09012 * 109.46660 * 52.61118 * 5 3 2 31 31 H 1.09004 * 109.06959 * 308.67040 * 7 6 3 32 32 H 1.08994 * 109.07044 * 67.68931 * 7 6 3 33 33 H 1.09002 * 109.56016 * 43.81848 * 8 7 6 34 34 H 1.09002 * 109.56277 * 164.03423 * 8 7 6 35 35 H 1.09005 * 108.79020 * 213.54781 * 9 8 7 36 36 H 1.09005 * 108.78954 * 331.87246 * 9 8 7 37 37 H 1.08990 * 109.47501 * 63.95223 * 11 10 9 38 38 H 1.09004 * 109.46515 * 183.95253 * 11 10 9 39 39 H 1.09000 * 109.47165 * 303.95121 * 11 10 9 40 40 H 1.09001 * 108.98736 * 198.24243 * 12 10 9 41 41 H 1.09001 * 108.98984 * 79.50460 * 12 10 9 42 42 H 0.96998 * 119.99984 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6472 1.9668 0.8712 5 6 3.5691 1.4430 0.0511 6 7 1.5906 2.1207 -1.2231 7 6 1.8829 1.3540 -2.3585 8 6 1.6020 2.1384 -3.6597 9 6 0.1137 2.1780 -3.8956 10 7 -0.5293 3.3829 -3.3237 11 6 -1.9920 3.2463 -3.3175 12 6 -0.0259 3.7477 -1.9834 13 6 0.1778 2.5359 -1.1097 14 1 -0.4716 1.7272 -1.4448 15 6 -0.1375 2.8814 0.3229 16 1 0.6518 2.9019 1.0598 17 6 -1.4337 3.1715 0.6928 18 7 -2.3949 3.1462 -0.2045 19 14 -1.8245 3.6005 2.4684 20 1 -1.7045 5.0680 2.6610 21 1 -3.2097 3.1709 2.7880 22 1 -0.8702 2.9033 3.3676 23 1 -0.3634 0.7179 0.7353 24 1 -0.3634 0.2778 -0.9894 25 1 -0.3633 -0.9958 0.2540 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9367 2.4605 -0.0809 29 1 3.9005 1.0591 1.0159 30 1 3.9593 0.8094 -0.7455 31 1 2.9347 1.0688 -2.3345 32 1 1.2695 0.4531 -2.3474 33 1 1.9832 3.1550 -3.5625 34 1 2.0929 1.6432 -4.4976 35 1 -0.0723 2.1569 -4.9694 36 1 -0.3369 1.2939 -3.4444 37 1 -2.2773 2.4246 -2.6607 38 1 -2.4417 4.1718 -2.9580 39 1 -2.3420 3.0411 -4.3291 40 1 -0.7433 4.4140 -1.5044 41 1 0.9243 4.2708 -2.0917 42 1 -3.3068 3.3499 0.0558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220420779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = 14.384496 kcal Electronic energy + Delta-G solvation = -19844.520561 eV Core-core repulsion = 17245.756156 eV Total energy + Delta-G solvation = -2598.764405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12427 -37.67452 -35.19278 -33.69447 -32.25736 -31.16777 -29.12965 -27.36483 -26.34744 -24.56407 -24.13978 -22.36004 -20.55550 -20.14206 -18.16041 -17.47203 -16.67254 -16.30239 -16.04808 -15.66251 -15.33571 -14.52666 -14.41061 -14.17247 -13.87152 -13.53690 -13.44334 -13.22316 -12.86795 -12.71905 -12.65545 -12.56051 -12.43156 -12.16988 -12.16049 -11.89798 -11.68533 -11.54341 -11.48005 -11.19260 -10.94870 -10.47808 -10.35967 -9.00292 -8.46123 -8.00723 -6.06597 1.41730 1.45847 1.51402 2.45796 3.24935 3.33391 3.52099 4.08966 4.11978 4.17863 4.37193 4.38454 4.48834 4.65451 4.76964 4.81042 4.86649 4.86938 4.94863 4.95473 4.99980 5.06870 5.11183 5.13952 5.19752 5.21860 5.27981 5.34187 5.38872 5.47060 5.57976 5.71410 5.81427 5.85918 5.96528 6.12190 6.44049 6.55206 6.63983 7.08510 7.18969 7.56464 9.01586 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.013521 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.978173 B = 2070.355690 C = 3041.324086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.131 4.131 6 N -0.552 5.552 7 C 0.073 3.927 8 C -0.113 4.113 9 C 0.064 3.936 10 N -0.560 5.560 11 C 0.059 3.941 12 C 0.090 3.910 13 C 0.208 3.792 14 H 0.004 0.996 15 C -0.511 4.511 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.901 5.901 19 Si 0.937 3.063 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.270 1.270 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.001 0.999 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.003 0.997 37 H 0.016 0.984 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -4.297 -3.316 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.038 4.038 4 H 0.105 0.895 5 C -0.189 4.189 6 N -0.275 5.275 7 C -0.057 4.057 8 C -0.151 4.151 9 C -0.063 4.063 10 N -0.285 5.285 11 C -0.089 4.089 12 C -0.038 4.038 13 C 0.101 3.899 14 H 0.021 0.979 15 C -0.549 4.549 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.540 5.540 19 Si 0.765 3.235 20 H -0.209 1.209 21 H -0.219 1.219 22 H -0.194 1.194 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.019 0.981 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.290 -3.496 -3.709 8.895 hybrid contribution -1.569 -1.002 1.585 2.445 sum 5.721 -4.498 -2.124 7.581 Atomic orbital electron populations 1.22002 0.96749 0.99707 1.02005 1.22000 0.95445 0.98520 1.01240 1.21971 0.95103 0.92048 0.94725 0.89497 1.21778 0.94125 1.01592 1.01396 1.59304 1.21926 1.44290 1.02026 1.21090 1.00000 0.93642 0.90938 1.21551 0.94578 1.01531 0.97413 1.21816 0.95333 0.90237 0.98919 1.62268 1.05389 1.35717 1.25082 1.21950 0.87828 1.00325 0.98813 1.21821 0.97420 0.98659 0.85903 1.19379 0.83043 0.92842 0.94589 0.97890 1.21507 0.92995 1.45989 0.94448 0.91427 1.25439 0.96551 0.95847 0.99631 1.70065 1.00481 1.49462 1.33992 0.85881 0.77005 0.78218 0.82420 1.20920 1.21873 1.19440 0.91704 0.94975 0.94647 0.92549 0.91561 0.92841 0.91777 0.92644 0.90489 0.98122 0.91443 0.88670 0.90616 0.97848 0.96568 0.93569 0.92200 0.93525 0.93756 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 8.33 71.98 0.60 -5.46 16 2 C -0.13 -4.62 4.90 30.60 0.15 -4.47 16 3 C 0.07 2.54 2.37 44.92 0.11 2.65 16 4 H 0.09 3.68 4.59 -2.39 -0.01 3.67 16 5 C -0.13 -3.82 9.01 71.98 0.65 -3.18 16 6 N -0.55 -22.01 3.85 -866.13 -3.33 -25.35 16 7 C 0.07 2.54 3.92 88.05 0.35 2.88 16 8 C -0.11 -3.67 5.68 30.37 0.17 -3.49 16 9 C 0.06 2.37 5.01 85.34 0.43 2.80 16 10 N -0.56 -23.75 4.99 -925.80 -4.62 -28.37 16 11 C 0.06 2.53 8.96 127.69 1.14 3.68 16 12 C 0.09 4.26 4.51 85.42 0.39 4.64 16 13 C 0.21 9.71 0.69 43.30 0.03 9.74 16 14 H 0.00 0.20 3.50 -2.39 -0.01 0.19 16 15 C -0.51 -25.63 5.13 25.60 0.13 -25.50 16 16 H 0.07 3.41 5.17 -2.91 -0.02 3.40 16 17 C 0.03 1.32 4.89 84.66 0.41 1.73 16 18 N -0.90 -48.33 11.16 21.45 0.24 -48.09 16 19 Si 0.94 42.10 29.54 68.60 2.03 44.12 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H 0.06 3.02 5.54 -2.38 -0.01 3.01 16 24 H 0.03 1.46 4.62 -2.39 -0.01 1.45 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.84 6.39 -2.39 -0.02 1.82 16 27 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.45 6.80 -2.38 -0.02 1.44 16 31 H 0.08 2.34 6.28 -2.38 -0.01 2.33 16 32 H 0.00 0.04 5.10 -2.39 -0.01 0.02 16 33 H 0.07 2.37 7.19 -2.39 -0.02 2.36 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.00 0.13 6.40 -2.38 -0.02 0.12 16 37 H 0.02 0.77 7.02 -2.39 -0.02 0.75 16 38 H 0.05 2.06 7.97 -2.39 -0.02 2.04 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.50 6.22 -2.39 -0.01 2.48 16 41 H 0.04 2.10 7.20 -2.39 -0.02 2.09 16 42 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -53.86 289.55 -0.14 -54.00 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.00 Total: 17.67 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.55 Total: -13.98 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -7.72 Total: -101.81 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -53.86 -0.14 -54.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.384 kcal (2) G-P(sol) polarization free energy of solvation -53.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds