Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47283 * 2 1 4 4 H 1.09006 * 109.47030 * 303.70673 * 3 2 1 5 5 C 1.52999 * 109.47617 * 183.70658 * 3 2 1 6 6 N 1.46898 * 109.47244 * 63.70311 * 3 2 1 7 7 C 1.44179 * 110.99931 * 67.04178 * 6 3 2 8 8 C 1.54321 * 112.61474 * 217.51446 * 7 6 3 9 9 C 1.54310 * 111.73436 * 318.91191 * 8 7 6 10 10 N 1.44181 * 112.60434 * 318.92045 * 9 8 7 11 11 C 1.46900 * 110.99717 * 217.51483 * 10 9 8 12 12 C 1.48077 * 109.89766 * 94.34698 * 10 9 8 13 13 C 1.46097 * 112.16088 * 279.64190 * 12 10 9 14 14 H 1.09001 * 108.94288 * 299.99695 * 13 12 10 15 15 C 1.50701 * 108.87141 * 181.32987 * 13 12 10 16 16 H 1.07998 * 119.99633 * 272.64329 * 15 13 12 17 17 C 1.37874 * 120.00083 * 92.64275 * 15 13 12 18 18 N 1.31512 * 119.99805 * 184.83422 * 17 15 13 19 19 Si 1.86797 * 119.99983 * 4.83796 * 17 15 13 20 20 H 1.48500 * 109.47157 * 84.79699 * 19 17 15 21 21 H 1.48501 * 109.46974 * 204.79121 * 19 17 15 22 22 H 1.48492 * 109.47336 * 324.79434 * 19 17 15 23 23 H 1.09002 * 109.47684 * 299.99996 * 1 2 3 24 24 H 1.09005 * 109.47278 * 60.00042 * 1 2 3 25 25 H 1.09005 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47182 * 239.99517 * 2 1 3 27 27 H 1.09007 * 109.46851 * 119.99644 * 2 1 3 28 28 H 1.09006 * 109.46933 * 300.00075 * 5 3 2 29 29 H 1.09002 * 109.47030 * 59.99296 * 5 3 2 30 30 H 1.08996 * 109.47366 * 179.97438 * 5 3 2 31 31 H 1.08997 * 108.85039 * 338.32235 * 7 6 3 32 32 H 1.08995 * 108.85637 * 96.70908 * 7 6 3 33 33 H 1.09008 * 109.02750 * 198.33135 * 8 7 6 34 34 H 1.09003 * 108.97086 * 79.45850 * 8 7 6 35 35 H 1.08994 * 108.86059 * 198.11413 * 9 8 7 36 36 H 1.08998 * 108.85385 * 79.72323 * 9 8 7 37 37 H 1.08996 * 109.47805 * 297.46566 * 11 10 9 38 38 H 1.09001 * 109.47385 * 57.46584 * 11 10 9 39 39 H 1.09004 * 109.47242 * 177.46386 * 11 10 9 40 40 H 1.09000 * 108.94672 * 158.95113 * 12 10 9 41 41 H 1.09000 * 108.87283 * 40.28107 * 12 10 9 42 42 H 0.96999 * 120.00378 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6234 1.9751 -0.8550 5 6 3.5671 1.4435 -0.0932 6 7 1.6248 2.1086 1.2416 7 6 2.2882 1.5317 2.3843 8 6 1.3713 1.4472 3.6227 9 6 0.5092 2.7169 3.7832 10 7 1.2451 3.9251 3.5048 11 6 0.8469 5.0059 4.4166 12 6 1.0460 4.3223 2.0923 13 6 1.8985 3.5627 1.1808 14 1 2.9418 3.7378 1.4435 15 6 1.6608 4.0469 -0.2263 16 1 0.8694 3.6138 -0.8200 17 6 2.4537 5.0429 -0.7558 18 7 2.1873 5.5319 -1.9472 19 14 3.9063 5.6977 0.2191 20 1 5.0877 4.8270 -0.0079 21 1 4.2178 7.0801 -0.2250 22 1 3.5685 5.7065 1.6651 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9837 0.9108 0.7617 29 1 3.8752 0.9491 -1.0145 30 1 3.9304 2.4711 -0.0937 31 1 2.6250 0.5277 2.1262 32 1 3.1580 2.1404 2.6311 33 1 1.9873 1.3210 4.5131 34 1 0.7152 0.5828 3.5195 35 1 0.1336 2.7609 4.8054 36 1 -0.3385 2.6557 3.1008 37 1 -0.2068 5.2399 4.2646 38 1 1.0032 4.6878 5.4474 39 1 1.4487 5.8920 4.2146 40 1 1.2731 5.3833 1.9876 41 1 0.0031 4.1557 1.8228 42 1 2.7448 6.2328 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220420843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = 15.072780 kcal Electronic energy + Delta-G solvation = -19475.502765 eV Core-core repulsion = 16876.768206 eV Total energy + Delta-G solvation = -2598.734559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15671 -36.45268 -33.41041 -32.43343 -31.34326 -29.36071 -27.60800 -25.59841 -25.31822 -23.02867 -22.49385 -20.60552 -19.51905 -18.07275 -16.87991 -16.00964 -14.71037 -14.52101 -14.46128 -14.23900 -13.78502 -13.20548 -13.08171 -12.77786 -12.68914 -12.47116 -12.01144 -11.91587 -11.40360 -11.35873 -11.08038 -10.99493 -10.86871 -10.65950 -10.42009 -10.36448 -10.10407 -10.05431 -9.91943 -9.67592 -9.39295 -8.86921 -8.59767 -7.65546 -7.13949 -6.12906 -4.12399 3.25610 3.35054 3.41683 4.37637 4.60217 4.89145 5.30149 5.44226 5.49041 5.64660 5.69249 5.76437 5.79761 5.86988 6.00875 6.11871 6.16771 6.19821 6.24955 6.25681 6.31977 6.40334 6.43719 6.50550 6.51495 6.61700 6.64877 6.72009 6.73953 6.86973 6.94724 7.10920 7.27414 7.41849 7.55854 7.78151 7.86155 8.14332 8.32055 8.70288 8.94307 9.50531 10.99102 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.013545 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.038596 B = 2066.730765 C = 3071.786242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C 0.089 3.911 4 H 0.110 0.890 5 C -0.174 4.174 6 N -0.518 5.518 7 C 0.061 3.939 8 C -0.099 4.099 9 C 0.070 3.930 10 N -0.550 5.550 11 C 0.031 3.969 12 C 0.079 3.921 13 C 0.187 3.813 14 H 0.012 0.988 15 C -0.511 4.511 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.864 3.136 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.259 1.259 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -6.940 8.703 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.019 4.019 4 H 0.128 0.872 5 C -0.233 4.233 6 N -0.242 5.242 7 C -0.068 4.068 8 C -0.138 4.138 9 C -0.060 4.060 10 N -0.274 5.274 11 C -0.118 4.118 12 C -0.047 4.047 13 C 0.080 3.920 14 H 0.029 0.971 15 C -0.550 4.550 16 H 0.101 0.899 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.691 3.309 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.183 1.183 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.066 -6.953 8.701 11.189 hybrid contribution 0.957 0.793 0.265 1.271 sum -0.109 -6.160 8.966 10.878 Atomic orbital electron populations 1.21592 0.95863 0.99311 1.02681 1.21649 0.96393 0.97127 1.00144 1.21704 0.92232 0.92734 0.95240 0.87190 1.22390 0.98928 1.02098 0.99854 1.61652 1.57189 1.04528 1.00837 1.21716 0.95237 0.98269 0.91601 1.21965 0.98194 0.96401 0.97263 1.21656 0.95183 0.90597 0.98523 1.61690 1.57141 1.03397 1.05206 1.22352 0.98037 0.95135 0.96270 1.21494 0.99749 0.99119 0.84373 1.18627 0.93915 0.84328 0.95133 0.97062 1.20961 1.17928 1.19842 0.96239 0.89926 1.24961 0.97118 0.95819 0.94664 1.69884 1.39056 1.27598 1.16625 0.87063 0.83865 0.78233 0.81708 1.20238 1.21680 1.18336 0.91683 0.93184 0.94784 0.92981 0.93124 0.94259 0.93631 0.91981 0.93050 0.95045 0.93168 0.92731 0.93801 0.93910 0.96323 0.92482 0.92037 0.92103 0.94418 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.79 37.16 0.36 -1.79 16 2 C -0.12 -1.88 5.32 -26.74 -0.14 -2.02 16 3 C 0.09 1.74 1.87 -67.72 -0.13 1.62 16 4 H 0.11 2.52 5.61 -51.93 -0.29 2.23 16 5 C -0.17 -3.36 8.58 37.16 0.32 -3.04 16 6 N -0.52 -10.41 3.57 -224.45 -0.80 -11.21 16 7 C 0.06 1.11 3.79 -4.59 -0.02 1.09 16 8 C -0.10 -1.57 6.42 -25.35 -0.16 -1.73 16 9 C 0.07 1.16 5.28 -4.59 -0.02 1.14 16 10 N -0.55 -10.29 4.52 -247.41 -1.12 -11.41 16 11 C 0.03 0.48 9.24 60.06 0.55 1.04 16 12 C 0.08 1.72 4.31 -6.45 -0.03 1.69 16 13 C 0.19 4.28 0.81 -71.49 -0.06 4.22 16 14 H 0.01 0.29 4.13 -51.93 -0.21 0.07 16 15 C -0.51 -13.40 6.62 -34.44 -0.23 -13.62 16 16 H 0.08 2.38 7.03 -52.49 -0.37 2.02 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 19 Si 0.86 21.18 26.23 -169.99 -4.46 16.72 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.26 -6.24 6.65 56.52 0.38 -5.86 16 23 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.78 6.31 -51.93 -0.33 0.46 16 28 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.38 6.65 -51.93 -0.35 1.03 16 31 H 0.05 0.86 4.91 -51.93 -0.26 0.61 16 32 H 0.03 0.63 7.17 -51.93 -0.37 0.26 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.64 7.49 -51.93 -0.39 0.25 16 36 H 0.04 0.77 7.16 -51.93 -0.37 0.40 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.78 7.98 -51.93 -0.41 0.36 16 39 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.06 1.39 7.12 -51.93 -0.37 1.02 16 41 H 0.04 0.84 7.36 -51.93 -0.38 0.46 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -27.54 303.15 -8.06 -35.60 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.38 Total: 0.53 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 0.35 Total: -9.39 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.15 Total: -48.03 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.46 Total: 16.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.54 -8.06 -35.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.676 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds