Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47283 * 2 1 4 4 H 1.09006 * 109.47030 * 303.70673 * 3 2 1 5 5 C 1.52999 * 109.47617 * 183.70658 * 3 2 1 6 6 N 1.46898 * 109.47244 * 63.70311 * 3 2 1 7 7 C 1.44179 * 110.99931 * 67.04178 * 6 3 2 8 8 C 1.54321 * 112.61474 * 217.51446 * 7 6 3 9 9 C 1.54310 * 111.73436 * 318.91191 * 8 7 6 10 10 N 1.44181 * 112.60434 * 318.92045 * 9 8 7 11 11 C 1.46900 * 110.99717 * 217.51483 * 10 9 8 12 12 C 1.48077 * 109.89766 * 94.34698 * 10 9 8 13 13 C 1.46097 * 112.16088 * 279.64190 * 12 10 9 14 14 H 1.09001 * 108.94288 * 299.99695 * 13 12 10 15 15 C 1.50701 * 108.87141 * 181.32987 * 13 12 10 16 16 H 1.07998 * 119.99633 * 272.64329 * 15 13 12 17 17 C 1.37874 * 120.00083 * 92.64275 * 15 13 12 18 18 N 1.31512 * 119.99805 * 184.83422 * 17 15 13 19 19 Si 1.86797 * 119.99983 * 4.83796 * 17 15 13 20 20 H 1.48500 * 109.47157 * 84.79699 * 19 17 15 21 21 H 1.48501 * 109.46974 * 204.79121 * 19 17 15 22 22 H 1.48492 * 109.47336 * 324.79434 * 19 17 15 23 23 H 1.09002 * 109.47684 * 299.99996 * 1 2 3 24 24 H 1.09005 * 109.47278 * 60.00042 * 1 2 3 25 25 H 1.09005 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47182 * 239.99517 * 2 1 3 27 27 H 1.09007 * 109.46851 * 119.99644 * 2 1 3 28 28 H 1.09006 * 109.46933 * 300.00075 * 5 3 2 29 29 H 1.09002 * 109.47030 * 59.99296 * 5 3 2 30 30 H 1.08996 * 109.47366 * 179.97438 * 5 3 2 31 31 H 1.08997 * 108.85039 * 338.32235 * 7 6 3 32 32 H 1.08995 * 108.85637 * 96.70908 * 7 6 3 33 33 H 1.09008 * 109.02750 * 198.33135 * 8 7 6 34 34 H 1.09003 * 108.97086 * 79.45850 * 8 7 6 35 35 H 1.08994 * 108.86059 * 198.11413 * 9 8 7 36 36 H 1.08998 * 108.85385 * 79.72323 * 9 8 7 37 37 H 1.08996 * 109.47805 * 297.46566 * 11 10 9 38 38 H 1.09001 * 109.47385 * 57.46584 * 11 10 9 39 39 H 1.09004 * 109.47242 * 177.46386 * 11 10 9 40 40 H 1.09000 * 108.94672 * 158.95113 * 12 10 9 41 41 H 1.09000 * 108.87283 * 40.28107 * 12 10 9 42 42 H 0.96999 * 120.00378 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6234 1.9751 -0.8550 5 6 3.5671 1.4435 -0.0932 6 7 1.6248 2.1086 1.2416 7 6 2.2882 1.5317 2.3843 8 6 1.3713 1.4472 3.6227 9 6 0.5092 2.7169 3.7832 10 7 1.2451 3.9251 3.5048 11 6 0.8469 5.0059 4.4166 12 6 1.0460 4.3223 2.0923 13 6 1.8985 3.5627 1.1808 14 1 2.9418 3.7378 1.4435 15 6 1.6608 4.0469 -0.2263 16 1 0.8694 3.6138 -0.8200 17 6 2.4537 5.0429 -0.7558 18 7 2.1873 5.5319 -1.9472 19 14 3.9063 5.6977 0.2191 20 1 5.0877 4.8270 -0.0079 21 1 4.2178 7.0801 -0.2250 22 1 3.5685 5.7065 1.6651 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9837 0.9108 0.7617 29 1 3.8752 0.9491 -1.0145 30 1 3.9304 2.4711 -0.0937 31 1 2.6250 0.5277 2.1262 32 1 3.1580 2.1404 2.6311 33 1 1.9873 1.3210 4.5131 34 1 0.7152 0.5828 3.5195 35 1 0.1336 2.7609 4.8054 36 1 -0.3385 2.6557 3.1008 37 1 -0.2068 5.2399 4.2646 38 1 1.0032 4.6878 5.4474 39 1 1.4487 5.8920 4.2146 40 1 1.2731 5.3833 1.9876 41 1 0.0031 4.1557 1.8228 42 1 2.7448 6.2328 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220420843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = -3.515183 kcal Electronic energy + Delta-G solvation = -19476.308800 eV Core-core repulsion = 16876.768206 eV Total energy + Delta-G solvation = -2599.540593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75026 -37.92702 -35.29028 -33.86646 -33.14121 -30.84463 -29.15652 -27.37116 -26.77909 -24.47269 -24.13644 -22.09433 -21.13010 -19.69721 -18.84177 -17.60809 -16.30628 -16.23508 -16.03554 -15.78582 -15.28678 -14.84006 -14.57319 -14.30539 -14.27950 -14.05177 -13.49769 -13.43475 -13.02909 -12.92805 -12.66721 -12.52078 -12.41429 -12.21350 -12.01322 -11.86285 -11.78907 -11.67076 -11.52328 -11.22763 -10.99115 -10.74367 -10.68183 -9.13198 -8.78221 -8.29127 -6.30065 1.26998 1.31649 1.42173 2.30626 2.97674 3.21563 3.44279 4.06817 4.14179 4.28858 4.38681 4.40785 4.46868 4.51193 4.53856 4.65801 4.71601 4.74205 4.80948 4.87599 4.92134 4.98455 4.99827 5.02622 5.08721 5.20768 5.24860 5.27486 5.30876 5.35393 5.44115 5.55472 5.61110 5.68937 5.78917 6.08034 6.31018 6.44993 6.54509 6.78267 6.95646 7.35859 8.86671 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.013545 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.038596 B = 2066.730765 C = 3071.786242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.087 3.913 4 H 0.066 0.934 5 C -0.168 4.168 6 N -0.517 5.517 7 C 0.060 3.940 8 C -0.095 4.095 9 C 0.067 3.933 10 N -0.558 5.558 11 C 0.029 3.971 12 C 0.089 3.911 13 C 0.196 3.804 14 H -0.003 1.003 15 C -0.495 4.495 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.940 5.940 19 Si 0.920 3.080 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.251 1.251 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.012 0.988 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.022 0.978 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -8.804 11.352 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.021 4.021 4 H 0.085 0.915 5 C -0.227 4.227 6 N -0.240 5.240 7 C -0.069 4.069 8 C -0.133 4.133 9 C -0.062 4.062 10 N -0.282 5.282 11 C -0.119 4.119 12 C -0.039 4.039 13 C 0.088 3.912 14 H 0.015 0.985 15 C -0.534 4.534 16 H 0.063 0.937 17 C -0.170 4.170 18 N -0.581 5.581 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.175 1.175 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.676 -8.833 11.378 14.420 hybrid contribution 0.765 1.304 -0.562 1.613 sum 0.089 -7.530 10.816 13.179 Atomic orbital electron populations 1.21533 0.95487 1.00691 1.01222 1.21572 0.96630 0.94478 1.01699 1.21652 0.92390 0.94540 0.93551 0.91546 1.22324 0.98627 1.00249 1.01523 1.61664 1.57529 1.02862 1.01970 1.21812 0.95083 0.98493 0.91560 1.21972 0.98202 0.96551 0.96622 1.21742 0.94651 0.90068 0.99739 1.61639 1.58018 1.05033 1.03490 1.22441 0.98282 0.94184 0.96973 1.21161 0.98272 0.97741 0.86731 1.18436 0.93217 0.86433 0.93076 0.98512 1.21062 1.16004 1.18705 0.97667 0.93750 1.25583 0.99563 0.96404 0.95416 1.70010 1.40632 1.28929 1.18496 0.86165 0.80993 0.77522 0.80778 1.19963 1.21548 1.17469 0.92865 0.94976 0.91893 0.91604 0.91206 0.92069 0.92361 0.95551 0.91196 0.96943 0.91123 0.90873 0.90871 0.95607 0.95702 0.89555 0.92572 0.93907 0.95934 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.79 71.98 0.70 -3.23 16 2 C -0.11 -3.22 5.32 30.59 0.16 -3.06 16 3 C 0.09 3.40 1.87 44.91 0.08 3.49 16 4 H 0.07 3.19 5.61 -2.38 -0.01 3.17 16 5 C -0.17 -6.39 8.58 71.98 0.62 -5.78 16 6 N -0.52 -20.50 3.57 -864.02 -3.08 -23.58 16 7 C 0.06 2.01 3.79 87.26 0.33 2.34 16 8 C -0.09 -2.64 6.42 31.49 0.20 -2.43 16 9 C 0.07 2.03 5.28 87.26 0.46 2.49 16 10 N -0.56 -19.79 4.52 -936.65 -4.23 -24.02 16 11 C 0.03 0.84 9.24 127.69 1.18 2.02 16 12 C 0.09 3.85 4.31 83.95 0.36 4.21 16 13 C 0.20 9.10 0.81 41.82 0.03 9.14 16 14 H 0.00 -0.13 4.13 -2.39 -0.01 -0.14 16 15 C -0.50 -27.18 6.62 25.60 0.17 -27.01 16 16 H 0.04 2.74 7.03 -2.91 -0.02 2.72 16 17 C 0.03 1.63 5.47 84.65 0.46 2.10 16 18 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 19 Si 0.92 44.86 26.23 68.60 1.80 46.66 16 20 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.25 -11.79 6.65 99.48 0.66 -11.13 16 23 H 0.05 1.70 7.71 -2.39 -0.02 1.68 16 24 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.88 6.31 -2.38 -0.02 1.87 16 28 H 0.06 2.02 6.53 -2.38 -0.02 2.01 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.03 1.16 6.65 -2.39 -0.02 1.14 16 31 H 0.07 2.09 4.91 -2.39 -0.01 2.08 16 32 H 0.01 0.47 7.17 -2.39 -0.02 0.45 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.82 7.49 -2.39 -0.02 1.80 16 36 H 0.03 0.88 7.16 -2.39 -0.02 0.86 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 2.01 7.98 -2.39 -0.02 1.99 16 39 H 0.06 1.67 8.06 -2.38 -0.02 1.65 16 40 H 0.04 1.97 7.12 -2.39 -0.02 1.96 16 41 H 0.02 1.03 7.36 -2.39 -0.02 1.01 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -61.89 303.15 0.48 -61.42 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.92 Total: 12.46 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.77 Total: -15.72 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -7.02 Total: -104.82 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.80 Total: 46.66 kcal Total: -61.89 0.48 -61.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220420843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.901 kcal (2) G-P(sol) polarization free energy of solvation -61.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds