Wall clock time and date at job start Mon Mar 30 2020 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 N 1.46893 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.47756 * 110.99878 * 62.40380 * 4 3 2 6 6 C 1.50774 * 111.91150 * 84.93878 * 5 4 3 7 7 H 1.08998 * 109.74523 * 334.96214 * 6 5 4 8 8 C 1.50703 * 109.73249 * 214.26038 * 6 5 4 9 9 H 1.07998 * 120.00172 * 295.72150 * 8 6 5 10 10 C 1.37879 * 120.00035 * 115.72437 * 8 6 5 11 11 N 1.31519 * 119.99781 * 5.71653 * 10 8 6 12 12 Si 1.86793 * 120.00429 * 185.72104 * 10 8 6 13 13 H 1.48505 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47552 * 119.99552 * 12 10 8 15 15 H 1.48499 * 109.47491 * 240.00123 * 12 10 8 16 16 N 1.47688 * 108.09381 * 94.61463 * 6 5 4 17 17 C 1.46904 * 110.99980 * 151.98270 * 16 6 5 18 18 C 1.40081 * 114.57247 * 278.68657 * 16 6 5 19 19 C 1.54513 * 111.51189 * 61.44677 * 18 16 6 20 20 C 1.48073 * 111.00152 * 190.00115 * 4 3 2 21 21 H 1.09002 * 108.78997 * 313.11303 * 20 4 3 22 22 C 1.53002 * 108.78793 * 71.32924 * 20 4 3 23 23 H 1.09000 * 109.46739 * 299.99320 * 1 2 3 24 24 H 1.09003 * 109.47383 * 59.99393 * 1 2 3 25 25 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47171 * 240.00648 * 2 1 3 27 27 H 1.08991 * 109.47628 * 120.00304 * 2 1 3 28 28 H 1.09006 * 109.46537 * 60.00260 * 3 2 1 29 29 H 1.09003 * 109.47456 * 300.00563 * 3 2 1 30 30 H 1.08993 * 108.98968 * 205.56399 * 5 4 3 31 31 H 1.08994 * 108.98984 * 324.39421 * 5 4 3 32 32 H 0.96997 * 120.00067 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.46720 * 53.79946 * 17 16 6 34 34 H 1.08998 * 109.46905 * 173.79296 * 17 16 6 35 35 H 1.08997 * 109.47042 * 293.79560 * 17 16 6 36 36 H 1.08998 * 109.07611 * 181.97769 * 18 16 6 37 37 H 1.09008 * 109.06672 * 300.92997 * 18 16 6 38 38 H 1.08998 * 109.55422 * 164.15436 * 19 18 16 39 39 H 1.08997 * 109.55745 * 43.83407 * 19 18 16 40 40 H 1.09004 * 109.47021 * 60.00036 * 22 20 4 41 41 H 1.08996 * 109.47014 * 180.02562 * 22 20 4 42 42 H 1.08999 * 109.46964 * 300.00148 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0389 0.8034 -1.2216 6 6 4.1258 1.7742 -2.3718 7 1 3.4055 2.5797 -2.2291 8 6 3.8387 1.0570 -3.6658 9 1 4.5032 0.2787 -4.0108 10 6 2.7277 1.3946 -4.4093 11 7 1.9811 2.4158 -4.0495 12 14 2.2829 0.4016 -5.9276 13 1 3.2755 -0.6868 -6.1156 14 1 0.9300 -0.1860 -5.7560 15 1 2.2899 1.2884 -7.1188 16 7 5.4944 2.3285 -2.4019 17 6 5.8743 2.7195 -3.7660 18 6 5.7188 3.3755 -1.4987 19 6 5.5168 2.9162 -0.0373 20 6 4.0395 2.8040 0.2407 21 1 3.5072 3.5064 -0.4007 22 6 3.7826 3.1826 1.7007 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8898 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9565 -0.8899 30 1 5.0339 0.4102 -1.0132 31 1 3.3839 -0.0209 -1.5033 32 1 1.1993 2.6531 -4.5723 33 1 5.1212 3.3939 -4.1736 34 1 6.8400 3.2243 -3.7436 35 1 5.9434 1.8304 -4.3928 36 1 6.7394 3.7383 -1.6202 37 1 5.0251 4.1879 -1.7157 38 1 5.9610 3.6462 0.6393 39 1 5.9904 1.9454 0.1088 40 1 4.2848 2.4697 2.3547 41 1 4.1688 4.1841 1.8897 42 1 2.7107 3.1637 1.8977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220421781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:17 Heat of formation + Delta-G solvation = 5.630201 kcal Electronic energy + Delta-G solvation = -19224.608980 eV Core-core repulsion = 16625.464960 eV Total energy + Delta-G solvation = -2599.144020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06793 -35.82131 -33.90309 -32.63565 -31.23067 -28.63020 -28.05616 -25.10065 -24.69443 -23.35374 -22.38012 -20.61678 -19.56066 -18.22105 -16.51218 -15.74506 -14.95673 -14.66997 -14.49896 -14.02110 -13.84856 -13.48689 -12.92726 -12.61294 -12.36471 -12.08168 -11.79443 -11.59412 -11.46873 -11.08460 -11.03201 -10.97338 -10.89149 -10.74245 -10.66085 -10.52423 -10.15928 -10.06480 -9.83515 -9.59667 -9.42563 -9.03554 -8.65036 -7.41977 -6.78960 -6.11892 -4.14355 3.22980 3.32236 3.36664 4.34363 4.61767 5.06071 5.34966 5.43906 5.45993 5.56788 5.65198 5.81131 5.85075 5.98801 6.06427 6.11719 6.24956 6.25564 6.34093 6.36834 6.42108 6.48419 6.51633 6.55153 6.65328 6.69363 6.78016 6.82413 6.85262 6.89130 7.03858 7.13212 7.37162 7.65883 7.77134 7.88542 7.99135 8.20195 8.42926 8.89477 9.01597 9.50078 10.95663 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.011595 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.695098 B = 2414.271088 C = 3602.373106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.058 3.942 4 N -0.547 5.547 5 C 0.067 3.933 6 C 0.178 3.822 7 H 0.050 0.950 8 C -0.505 4.505 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.285 1.285 16 N -0.566 5.566 17 C 0.064 3.936 18 C 0.078 3.922 19 C -0.111 4.111 20 C 0.086 3.914 21 H 0.036 0.964 22 C -0.140 4.140 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.261 0.739 33 H 0.020 0.980 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.004 0.996 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 0.141 7.474 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.070 4.070 4 N -0.272 5.272 5 C -0.060 4.060 6 C 0.072 3.928 7 H 0.068 0.932 8 C -0.545 4.545 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.530 5.530 12 Si 0.718 3.282 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.211 1.211 16 N -0.292 5.292 17 C -0.084 4.084 18 C -0.053 4.053 19 C -0.149 4.149 20 C -0.022 4.022 21 H 0.054 0.946 22 C -0.198 4.198 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.723 -0.372 7.960 8.152 hybrid contribution -1.163 0.774 -1.821 2.295 sum 0.560 0.401 6.138 6.177 Atomic orbital electron populations 1.21707 0.96529 1.00878 1.01413 1.21529 0.94596 0.97242 1.02212 1.22012 0.88291 0.96524 1.00186 1.62237 1.06505 1.19466 1.39004 1.22312 0.99082 0.97633 0.86982 1.19751 0.83937 0.94697 0.94400 0.93194 1.21021 1.08717 1.19123 1.05620 0.92181 1.24975 0.96475 0.94592 0.97477 1.69918 1.16806 1.26355 1.39895 0.86557 0.78506 0.80331 0.82781 1.19499 1.20898 1.21118 1.59468 1.29968 1.34066 1.05671 1.21841 0.96181 0.99720 0.90623 1.20940 0.98629 0.92816 0.92894 1.21571 0.95402 1.02057 0.95914 1.21230 0.95334 0.90279 0.95333 0.94606 1.21913 1.01070 0.99976 0.96796 0.93467 0.92653 0.93261 0.91176 0.92304 0.92547 0.93720 0.92221 0.90974 0.92914 0.96102 0.95452 0.91436 0.93189 0.97823 0.91961 0.90450 0.92386 0.93202 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.12 -2.04 5.85 -26.73 -0.16 -2.19 16 3 C 0.06 1.11 4.75 -3.83 -0.02 1.09 16 4 N -0.55 -10.76 4.45 -227.71 -1.01 -11.77 16 5 C 0.07 1.49 4.66 -4.47 -0.02 1.46 16 6 C 0.18 4.34 2.09 -69.55 -0.15 4.20 16 7 H 0.05 1.40 5.08 -51.93 -0.26 1.13 16 8 C -0.51 -13.33 6.03 -34.44 -0.21 -13.54 16 9 H 0.06 1.61 7.56 -52.49 -0.40 1.21 16 10 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 11 N -0.89 -25.02 12.63 55.43 0.70 -24.32 16 12 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 N -0.57 -12.69 4.20 -241.36 -1.01 -13.70 16 17 C 0.06 1.41 8.65 60.07 0.52 1.92 16 18 C 0.08 1.54 4.95 -6.55 -0.03 1.51 16 19 C -0.11 -1.96 5.19 -27.07 -0.14 -2.10 16 20 C 0.09 1.59 1.81 -68.20 -0.12 1.47 16 21 H 0.04 0.77 6.41 -51.93 -0.33 0.43 16 22 C -0.14 -2.11 8.99 37.16 0.33 -1.77 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.34 6.07 -51.93 -0.32 1.03 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.98 6.34 -51.93 -0.33 0.65 16 29 H 0.04 1.02 7.66 -51.93 -0.40 0.62 16 30 H 0.06 1.33 7.20 -51.93 -0.37 0.96 16 31 H 0.07 1.66 5.15 -51.93 -0.27 1.39 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.02 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.03 0.51 7.76 -51.93 -0.40 0.11 16 35 H 0.07 1.52 6.89 -51.93 -0.36 1.16 16 36 H 0.05 0.90 7.78 -51.93 -0.40 0.49 16 37 H 0.00 0.08 7.60 -51.92 -0.39 -0.31 16 38 H 0.06 0.93 7.63 -51.93 -0.40 0.53 16 39 H 0.08 1.43 7.19 -51.93 -0.37 1.06 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.66 7.99 -51.93 -0.42 0.25 16 42 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -27.16 308.40 -8.85 -36.01 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.43 Total: 1.40 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.28 Total: -8.11 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -1.33 Total: -49.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.16 -8.85 -36.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220421781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.638 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds