Wall clock time and date at job start Mon Mar 30 2020 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 N 1.46893 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.47756 * 110.99878 * 62.40380 * 4 3 2 6 6 C 1.50774 * 111.91150 * 84.93878 * 5 4 3 7 7 H 1.08998 * 109.74523 * 334.96214 * 6 5 4 8 8 C 1.50703 * 109.73249 * 214.26038 * 6 5 4 9 9 H 1.07998 * 120.00172 * 295.72150 * 8 6 5 10 10 C 1.37879 * 120.00035 * 115.72437 * 8 6 5 11 11 N 1.31519 * 119.99781 * 5.71653 * 10 8 6 12 12 Si 1.86793 * 120.00429 * 185.72104 * 10 8 6 13 13 H 1.48505 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47552 * 119.99552 * 12 10 8 15 15 H 1.48499 * 109.47491 * 240.00123 * 12 10 8 16 16 N 1.47688 * 108.09381 * 94.61463 * 6 5 4 17 17 C 1.46904 * 110.99980 * 151.98270 * 16 6 5 18 18 C 1.40081 * 114.57247 * 278.68657 * 16 6 5 19 19 C 1.54513 * 111.51189 * 61.44677 * 18 16 6 20 20 C 1.48073 * 111.00152 * 190.00115 * 4 3 2 21 21 H 1.09002 * 108.78997 * 313.11303 * 20 4 3 22 22 C 1.53002 * 108.78793 * 71.32924 * 20 4 3 23 23 H 1.09000 * 109.46739 * 299.99320 * 1 2 3 24 24 H 1.09003 * 109.47383 * 59.99393 * 1 2 3 25 25 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47171 * 240.00648 * 2 1 3 27 27 H 1.08991 * 109.47628 * 120.00304 * 2 1 3 28 28 H 1.09006 * 109.46537 * 60.00260 * 3 2 1 29 29 H 1.09003 * 109.47456 * 300.00563 * 3 2 1 30 30 H 1.08993 * 108.98968 * 205.56399 * 5 4 3 31 31 H 1.08994 * 108.98984 * 324.39421 * 5 4 3 32 32 H 0.96997 * 120.00067 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.46720 * 53.79946 * 17 16 6 34 34 H 1.08998 * 109.46905 * 173.79296 * 17 16 6 35 35 H 1.08997 * 109.47042 * 293.79560 * 17 16 6 36 36 H 1.08998 * 109.07611 * 181.97769 * 18 16 6 37 37 H 1.09008 * 109.06672 * 300.92997 * 18 16 6 38 38 H 1.08998 * 109.55422 * 164.15436 * 19 18 16 39 39 H 1.08997 * 109.55745 * 43.83407 * 19 18 16 40 40 H 1.09004 * 109.47021 * 60.00036 * 22 20 4 41 41 H 1.08996 * 109.47014 * 180.02562 * 22 20 4 42 42 H 1.08999 * 109.46964 * 300.00148 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0389 0.8034 -1.2216 6 6 4.1258 1.7742 -2.3718 7 1 3.4055 2.5797 -2.2291 8 6 3.8387 1.0570 -3.6658 9 1 4.5032 0.2787 -4.0108 10 6 2.7277 1.3946 -4.4093 11 7 1.9811 2.4158 -4.0495 12 14 2.2829 0.4016 -5.9276 13 1 3.2755 -0.6868 -6.1156 14 1 0.9300 -0.1860 -5.7560 15 1 2.2899 1.2884 -7.1188 16 7 5.4944 2.3285 -2.4019 17 6 5.8743 2.7195 -3.7660 18 6 5.7188 3.3755 -1.4987 19 6 5.5168 2.9162 -0.0373 20 6 4.0395 2.8040 0.2407 21 1 3.5072 3.5064 -0.4007 22 6 3.7826 3.1826 1.7007 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8898 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9565 -0.8899 30 1 5.0339 0.4102 -1.0132 31 1 3.3839 -0.0209 -1.5033 32 1 1.1993 2.6531 -4.5723 33 1 5.1212 3.3939 -4.1736 34 1 6.8400 3.2243 -3.7436 35 1 5.9434 1.8304 -4.3928 36 1 6.7394 3.7383 -1.6202 37 1 5.0251 4.1879 -1.7157 38 1 5.9610 3.6462 0.6393 39 1 5.9904 1.9454 0.1088 40 1 4.2848 2.4697 2.3547 41 1 4.1688 4.1841 1.8897 42 1 2.7107 3.1637 1.8977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220421781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:17 Heat of formation + Delta-G solvation = -11.951346 kcal Electronic energy + Delta-G solvation = -19225.371373 eV Core-core repulsion = 16625.464960 eV Total energy + Delta-G solvation = -2599.906413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74283 -37.48186 -35.54266 -34.42812 -32.90629 -30.20718 -29.76296 -26.87122 -26.37232 -24.97355 -24.05020 -22.18926 -21.17186 -19.93350 -18.54240 -17.33407 -16.83165 -16.32968 -16.18753 -15.68212 -15.50083 -15.08044 -14.48570 -14.28566 -13.93635 -13.57724 -13.32154 -13.22211 -12.95628 -12.86995 -12.69714 -12.61559 -12.52941 -12.46237 -12.19192 -12.14237 -11.86270 -11.61295 -11.43237 -11.25847 -11.11843 -10.93819 -10.71735 -9.17244 -8.63280 -8.19190 -6.27857 1.34128 1.37544 1.48860 2.36383 3.01616 3.11112 3.56460 3.97200 3.99975 4.10526 4.26306 4.34754 4.47523 4.61731 4.63407 4.67092 4.73049 4.78955 4.84095 4.87575 4.92765 4.95201 4.99851 5.01289 5.08356 5.14887 5.19403 5.25511 5.33501 5.35965 5.41941 5.47224 5.58051 5.62656 5.78235 5.96407 6.35645 6.45171 6.49377 6.94863 7.06535 7.40020 8.87698 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.011595 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.695098 B = 2414.271088 C = 3602.373106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.064 3.936 4 N -0.538 5.538 5 C 0.079 3.921 6 C 0.185 3.815 7 H 0.011 0.989 8 C -0.512 4.512 9 H 0.054 0.946 10 C 0.022 3.978 11 N -0.924 5.924 12 Si 0.950 3.050 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.283 1.283 16 N -0.567 5.567 17 C 0.071 3.929 18 C 0.073 3.927 19 C -0.103 4.103 20 C 0.082 3.918 21 H -0.002 1.002 22 C -0.130 4.130 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.078 0.922 29 H -0.003 1.003 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.260 0.740 33 H -0.013 1.013 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.077 0.923 37 H -0.021 1.021 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -0.381 9.106 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.064 4.064 4 N -0.263 5.263 5 C -0.049 4.049 6 C 0.078 3.922 7 H 0.029 0.971 8 C -0.552 4.552 9 H 0.072 0.928 10 C -0.178 4.178 11 N -0.563 5.563 12 Si 0.776 3.224 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.210 1.210 16 N -0.292 5.292 17 C -0.077 4.077 18 C -0.057 4.057 19 C -0.141 4.141 20 C -0.026 4.026 21 H 0.016 0.984 22 C -0.187 4.187 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.015 0.985 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.006 0.994 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.095 0.905 37 H -0.003 1.003 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.607 -0.896 9.601 9.989 hybrid contribution -1.390 0.992 -2.312 2.875 sum 1.217 0.096 7.288 7.390 Atomic orbital electron populations 1.21666 0.94811 1.02173 1.01309 1.21488 0.96111 0.95680 1.01796 1.22009 0.87930 0.97582 0.98879 1.62361 1.06767 1.20244 1.36887 1.22045 0.98826 0.96803 0.87274 1.19564 0.84131 0.93841 0.94622 0.97141 1.21222 1.08628 1.18879 1.06447 0.92818 1.25670 0.96462 0.95429 1.00213 1.70061 1.17263 1.27883 1.41123 0.85622 0.78312 0.79077 0.79412 1.18662 1.20573 1.20953 1.59520 1.28286 1.35090 1.06305 1.21792 0.96887 0.98769 0.90286 1.21103 0.99381 0.91376 0.93880 1.21572 0.94754 1.02875 0.94850 1.21389 0.95586 0.88475 0.97173 0.98431 1.21834 1.01513 1.01537 0.93849 0.91389 0.94903 0.91275 0.93750 0.90338 0.90339 0.98466 0.92117 0.92415 0.93108 0.99390 0.91877 0.92455 0.90477 1.00283 0.88290 0.90705 0.91060 0.90977 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.91 71.98 0.71 -3.45 16 2 C -0.11 -3.86 5.85 30.59 0.18 -3.68 16 3 C 0.06 2.47 4.75 86.31 0.41 2.88 16 4 N -0.54 -21.08 4.45 -874.34 -3.89 -24.97 16 5 C 0.08 3.54 4.66 85.42 0.40 3.93 16 6 C 0.18 9.35 2.09 43.30 0.09 9.44 16 7 H 0.01 0.63 5.08 -2.39 -0.01 0.62 16 8 C -0.51 -27.90 6.03 25.60 0.15 -27.74 16 9 H 0.05 2.94 7.56 -2.91 -0.02 2.92 16 10 C 0.02 1.20 5.45 84.65 0.46 1.67 16 11 N -0.92 -54.22 12.63 21.45 0.27 -53.95 16 12 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 N -0.57 -25.55 4.20 -917.52 -3.85 -29.40 16 17 C 0.07 3.12 8.65 127.69 1.10 4.22 16 18 C 0.07 2.82 4.95 88.05 0.44 3.26 16 19 C -0.10 -3.40 5.19 30.38 0.16 -3.24 16 20 C 0.08 2.96 1.81 43.96 0.08 3.04 16 21 H 0.00 -0.11 6.41 -2.39 -0.02 -0.12 16 22 C -0.13 -3.54 8.99 71.98 0.65 -2.89 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.74 6.07 -2.38 -0.01 1.72 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.65 6.34 -2.38 -0.02 2.64 16 29 H 0.00 -0.15 7.66 -2.39 -0.02 -0.17 16 30 H 0.06 2.70 7.20 -2.39 -0.02 2.68 16 31 H 0.06 2.75 5.15 -2.39 -0.01 2.73 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 34 H 0.06 2.30 7.76 -2.39 -0.02 2.28 16 35 H 0.06 2.61 6.89 -2.39 -0.02 2.59 16 36 H 0.08 2.58 7.78 -2.39 -0.02 2.56 16 37 H -0.02 -0.92 7.60 -2.38 -0.02 -0.94 16 38 H 0.10 2.57 7.63 -2.39 -0.02 2.56 16 39 H 0.07 2.57 7.19 -2.39 -0.02 2.56 16 40 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 1.66 7.99 -2.39 -0.02 1.64 16 42 H 0.05 1.34 6.54 -2.39 -0.02 1.32 16 Total: -1.00 -61.25 308.40 0.35 -60.90 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.97 Total: 14.23 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.83 Total: -12.58 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -7.47 Total: -108.32 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -61.25 0.35 -60.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220421781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.946 kcal (2) G-P(sol) polarization free energy of solvation -61.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds