Wall clock time and date at job start Mon Mar 30 2020 03:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46792 * 2 1 4 4 N 1.46899 * 109.47037 * 180.02562 * 3 2 1 5 5 C 1.40011 * 110.99991 * 62.02313 * 4 3 2 6 6 C 1.54207 * 112.07991 * 188.10254 * 5 4 3 7 7 H 1.08993 * 109.67715 * 41.06619 * 6 5 4 8 8 C 1.50700 * 109.57135 * 161.38455 * 6 5 4 9 9 H 1.07994 * 120.00571 * 34.80539 * 8 6 5 10 10 C 1.37882 * 119.99538 * 214.80371 * 8 6 5 11 11 N 1.31509 * 120.00326 * 354.33310 * 10 8 6 12 12 Si 1.86802 * 119.99694 * 174.32886 * 10 8 6 13 13 H 1.48494 * 109.47336 * 270.00099 * 12 10 8 14 14 H 1.48498 * 109.47205 * 30.00673 * 12 10 8 15 15 H 1.48501 * 109.47019 * 150.00143 * 12 10 8 16 16 N 1.44580 * 108.85486 * 281.19113 * 6 5 4 17 17 C 1.46899 * 110.99989 * 220.34871 * 16 6 5 18 18 C 1.48063 * 113.85537 * 94.22327 * 16 6 5 19 19 C 1.53700 * 112.47218 * 318.31904 * 18 16 6 20 20 C 1.47902 * 111.00206 * 189.99999 * 4 3 2 21 21 H 1.08997 * 109.63271 * 273.47469 * 20 4 3 22 22 C 1.52997 * 109.79863 * 33.97428 * 20 4 3 23 23 H 1.08992 * 109.47249 * 60.00397 * 1 2 3 24 24 H 1.09007 * 109.47186 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47259 * 299.99624 * 1 2 3 26 26 H 1.09002 * 109.47097 * 239.99854 * 2 1 3 27 27 H 1.08999 * 109.46928 * 119.99833 * 2 1 3 28 28 H 1.09002 * 109.47418 * 60.00051 * 3 2 1 29 29 H 1.08999 * 109.47247 * 299.99637 * 3 2 1 30 30 H 1.09000 * 108.95862 * 67.43333 * 5 4 3 31 31 H 1.09004 * 108.96446 * 308.77434 * 5 4 3 32 32 H 0.97002 * 119.99884 * 354.54757 * 11 10 8 33 33 H 1.08995 * 109.47016 * 64.65667 * 17 16 6 34 34 H 1.09006 * 109.46643 * 184.65796 * 17 16 6 35 35 H 1.09000 * 109.46829 * 304.65592 * 17 16 6 36 36 H 1.09004 * 108.88181 * 79.08895 * 18 16 6 37 37 H 1.09000 * 108.88548 * 197.64732 * 18 16 6 38 38 H 1.09001 * 108.95113 * 79.23056 * 19 18 16 39 39 H 1.09001 * 108.95460 * 197.87652 * 19 18 16 40 40 H 1.09005 * 109.47508 * 179.10154 * 22 20 4 41 41 H 1.09005 * 109.47128 * 299.10579 * 22 20 4 42 42 H 1.09000 * 109.47263 * 59.10628 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0102 0.8296 -1.1553 6 6 5.5387 0.6357 -1.0917 7 1 5.8261 0.3102 -0.0919 8 6 5.9584 -0.4019 -2.1007 9 1 5.4408 -0.4769 -3.0455 10 6 7.0034 -1.2558 -1.8175 11 7 7.7053 -1.0937 -0.7172 12 14 7.4219 -2.6428 -2.9966 13 1 6.6544 -3.8581 -2.6237 14 1 7.0680 -2.2392 -4.3812 15 1 8.8763 -2.9337 -2.9224 16 7 6.1824 1.8943 -1.3950 17 6 7.3615 1.6907 -2.2471 18 6 6.5246 2.6957 -0.1979 19 6 5.4084 2.6796 0.8586 20 6 4.0390 2.8024 0.2391 21 1 4.1118 3.3391 -0.7067 22 6 3.1107 3.5603 1.1902 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.7674 1.4488 -2.0188 31 1 3.5344 -0.1439 -1.2746 32 1 7.5402 -0.3281 -0.1449 33 1 7.0477 1.2961 -3.2134 34 1 7.8737 2.6420 -2.3919 35 1 8.0381 0.9830 -1.7680 36 1 7.4362 2.2953 0.2458 37 1 6.7047 3.7265 -0.5031 38 1 5.4623 1.7446 1.4163 39 1 5.5612 3.5103 1.5476 40 1 3.5145 4.5556 1.3757 41 1 2.1218 3.6475 0.7399 42 1 3.0343 3.0178 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220421844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:20 Heat of formation + Delta-G solvation = 9.816487 kcal Electronic energy + Delta-G solvation = -19074.391063 eV Core-core repulsion = 16475.428574 eV Total energy + Delta-G solvation = -2598.962489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.24899 -36.25353 -34.05459 -32.44153 -31.60367 -28.86391 -27.89631 -25.30516 -24.42194 -23.16132 -22.55841 -20.91888 -19.29047 -19.00308 -16.69880 -15.38805 -15.08283 -14.99855 -14.63321 -14.00618 -13.78691 -13.66861 -13.20698 -12.80988 -12.44455 -12.25203 -12.09174 -11.79322 -11.65701 -11.37749 -11.33239 -10.95410 -10.76309 -10.69097 -10.42984 -10.35450 -10.20510 -10.13937 -9.96748 -9.75747 -9.56697 -8.48458 -8.40975 -7.46254 -6.89859 -6.40022 -4.10861 3.41508 3.43557 3.59809 4.41811 4.53738 5.04185 5.24379 5.28852 5.32895 5.39212 5.45966 5.58136 5.70676 5.79119 5.86298 5.91041 6.00570 6.03313 6.10167 6.16736 6.19059 6.35438 6.43912 6.46436 6.52293 6.57384 6.59353 6.60328 6.67257 6.88883 6.91246 7.11271 7.36797 7.42027 7.82318 7.86756 8.17437 8.39315 8.60029 8.71070 8.88924 9.59249 10.95748 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.009081 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.381989 B = 3082.722909 C = 4058.716760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.056 3.944 4 N -0.546 5.546 5 C 0.087 3.913 6 C 0.201 3.799 7 H 0.027 0.973 8 C -0.589 4.589 9 H 0.051 0.949 10 C 0.025 3.975 11 N -0.905 5.905 12 Si 1.067 2.933 13 H -0.287 1.287 14 H -0.288 1.288 15 H -0.286 1.286 16 N -0.560 5.560 17 C 0.060 3.940 18 C 0.061 3.939 19 C -0.110 4.110 20 C 0.099 3.901 21 H 0.051 0.949 22 C -0.151 4.151 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.270 0.730 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.021 0.979 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 6.212 2.356 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.071 4.071 4 N -0.271 5.271 5 C -0.043 4.043 6 C 0.095 3.905 7 H 0.045 0.955 8 C -0.628 4.628 9 H 0.069 0.931 10 C -0.180 4.180 11 N -0.542 5.542 12 Si 0.895 3.105 13 H -0.213 1.213 14 H -0.214 1.214 15 H -0.211 1.211 16 N -0.286 5.286 17 C -0.088 4.088 18 C -0.067 4.067 19 C -0.148 4.148 20 C -0.008 4.008 21 H 0.069 0.931 22 C -0.208 4.208 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.895 4.895 2.271 9.563 hybrid contribution -0.654 1.358 -0.047 1.508 sum -8.549 6.253 2.224 10.823 Atomic orbital electron populations 1.21725 0.96312 1.01287 1.01199 1.21629 0.94574 0.97175 1.03080 1.22193 0.88578 0.96535 0.99840 1.59404 1.05698 1.19911 1.42062 1.21136 0.98030 0.97029 0.88058 1.19211 0.88696 0.85662 0.96968 0.95546 1.21921 1.19000 1.18197 1.03724 0.93056 1.25814 0.93057 1.00416 0.98702 1.70783 1.40065 1.30846 1.12495 0.83574 0.76420 0.75587 0.74895 1.21340 1.21375 1.21133 1.61313 1.27257 1.23106 1.16913 1.21931 0.91492 0.96788 0.98593 1.22265 0.95756 0.97275 0.91453 1.21427 0.93936 1.01885 0.97591 1.21137 0.93807 0.88272 0.97633 0.93097 1.22098 0.99271 0.99486 0.99967 0.93168 0.92872 0.93119 0.91454 0.91374 0.90900 0.96020 0.97448 0.91368 0.91856 0.91677 0.96194 0.94277 0.96079 0.93312 0.91206 0.92366 0.92672 0.92765 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.13 -1.91 5.73 -26.73 -0.15 -2.06 16 3 C 0.06 0.89 4.11 -3.83 -0.02 0.87 16 4 N -0.55 -10.40 4.08 -231.76 -0.94 -11.35 16 5 C 0.09 1.93 4.30 -6.75 -0.03 1.91 16 6 C 0.20 5.03 1.76 -69.48 -0.12 4.91 16 7 H 0.03 0.75 5.38 -51.93 -0.28 0.47 16 8 C -0.59 -16.00 6.00 -34.44 -0.21 -16.20 16 9 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 10 C 0.03 0.70 4.49 -17.82 -0.08 0.62 16 11 N -0.91 -26.54 12.69 55.43 0.70 -25.83 16 12 Si 1.07 24.77 29.91 -169.99 -5.08 19.69 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 N -0.56 -13.00 4.19 -235.88 -0.99 -13.99 16 17 C 0.06 1.41 8.40 60.06 0.50 1.91 16 18 C 0.06 1.23 5.43 -2.82 -0.02 1.22 16 19 C -0.11 -2.00 4.92 -27.47 -0.14 -2.14 16 20 C 0.10 1.73 2.43 -68.27 -0.17 1.56 16 21 H 0.05 0.98 7.57 -51.93 -0.39 0.59 16 22 C -0.15 -2.06 7.75 37.16 0.29 -1.77 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.12 6.26 -51.93 -0.33 0.79 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.03 5.66 -51.93 -0.29 0.74 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 16 31 H 0.07 1.55 5.59 -51.93 -0.29 1.26 16 32 H 0.27 8.01 6.26 -40.82 -0.26 7.76 16 33 H 0.06 1.59 7.06 -51.93 -0.37 1.22 16 34 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 35 H 0.04 1.02 5.65 -51.93 -0.29 0.72 16 36 H 0.02 0.45 8.03 -51.93 -0.42 0.04 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.42 7.23 -51.93 -0.38 1.05 16 39 H 0.06 0.89 7.70 -51.93 -0.40 0.49 16 40 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.05 0.69 6.46 -51.93 -0.34 0.35 16 42 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -28.48 305.18 -8.92 -37.40 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.44 Total: 0.05 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 0.24 Total: -10.56 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -1.23 Total: -51.18 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.48 -8.92 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220421844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.215 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds