Wall clock time and date at job start Mon Mar 30 2020 03:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46792 * 2 1 4 4 N 1.46899 * 109.47037 * 180.02562 * 3 2 1 5 5 C 1.40011 * 110.99991 * 62.02313 * 4 3 2 6 6 C 1.54207 * 112.07991 * 188.10254 * 5 4 3 7 7 H 1.08993 * 109.67715 * 41.06619 * 6 5 4 8 8 C 1.50700 * 109.57135 * 161.38455 * 6 5 4 9 9 H 1.07994 * 120.00571 * 34.80539 * 8 6 5 10 10 C 1.37882 * 119.99538 * 214.80371 * 8 6 5 11 11 N 1.31509 * 120.00326 * 354.33310 * 10 8 6 12 12 Si 1.86802 * 119.99694 * 174.32886 * 10 8 6 13 13 H 1.48494 * 109.47336 * 270.00099 * 12 10 8 14 14 H 1.48498 * 109.47205 * 30.00673 * 12 10 8 15 15 H 1.48501 * 109.47019 * 150.00143 * 12 10 8 16 16 N 1.44580 * 108.85486 * 281.19113 * 6 5 4 17 17 C 1.46899 * 110.99989 * 220.34871 * 16 6 5 18 18 C 1.48063 * 113.85537 * 94.22327 * 16 6 5 19 19 C 1.53700 * 112.47218 * 318.31904 * 18 16 6 20 20 C 1.47902 * 111.00206 * 189.99999 * 4 3 2 21 21 H 1.08997 * 109.63271 * 273.47469 * 20 4 3 22 22 C 1.52997 * 109.79863 * 33.97428 * 20 4 3 23 23 H 1.08992 * 109.47249 * 60.00397 * 1 2 3 24 24 H 1.09007 * 109.47186 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47259 * 299.99624 * 1 2 3 26 26 H 1.09002 * 109.47097 * 239.99854 * 2 1 3 27 27 H 1.08999 * 109.46928 * 119.99833 * 2 1 3 28 28 H 1.09002 * 109.47418 * 60.00051 * 3 2 1 29 29 H 1.08999 * 109.47247 * 299.99637 * 3 2 1 30 30 H 1.09000 * 108.95862 * 67.43333 * 5 4 3 31 31 H 1.09004 * 108.96446 * 308.77434 * 5 4 3 32 32 H 0.97002 * 119.99884 * 354.54757 * 11 10 8 33 33 H 1.08995 * 109.47016 * 64.65667 * 17 16 6 34 34 H 1.09006 * 109.46643 * 184.65796 * 17 16 6 35 35 H 1.09000 * 109.46829 * 304.65592 * 17 16 6 36 36 H 1.09004 * 108.88181 * 79.08895 * 18 16 6 37 37 H 1.09000 * 108.88548 * 197.64732 * 18 16 6 38 38 H 1.09001 * 108.95113 * 79.23056 * 19 18 16 39 39 H 1.09001 * 108.95460 * 197.87652 * 19 18 16 40 40 H 1.09005 * 109.47508 * 179.10154 * 22 20 4 41 41 H 1.09005 * 109.47128 * 299.10579 * 22 20 4 42 42 H 1.09000 * 109.47263 * 59.10628 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0102 0.8296 -1.1553 6 6 5.5387 0.6357 -1.0917 7 1 5.8261 0.3102 -0.0919 8 6 5.9584 -0.4019 -2.1007 9 1 5.4408 -0.4769 -3.0455 10 6 7.0034 -1.2558 -1.8175 11 7 7.7053 -1.0937 -0.7172 12 14 7.4219 -2.6428 -2.9966 13 1 6.6544 -3.8581 -2.6237 14 1 7.0680 -2.2392 -4.3812 15 1 8.8763 -2.9337 -2.9224 16 7 6.1824 1.8943 -1.3950 17 6 7.3615 1.6907 -2.2471 18 6 6.5246 2.6957 -0.1979 19 6 5.4084 2.6796 0.8586 20 6 4.0390 2.8024 0.2391 21 1 4.1118 3.3391 -0.7067 22 6 3.1107 3.5603 1.1902 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.7674 1.4488 -2.0188 31 1 3.5344 -0.1439 -1.2746 32 1 7.5402 -0.3281 -0.1449 33 1 7.0477 1.2961 -3.2134 34 1 7.8737 2.6420 -2.3919 35 1 8.0381 0.9830 -1.7680 36 1 7.4362 2.2953 0.2458 37 1 6.7047 3.7265 -0.5031 38 1 5.4623 1.7446 1.4163 39 1 5.5612 3.5103 1.5476 40 1 3.5145 4.5556 1.3757 41 1 2.1218 3.6475 0.7399 42 1 3.0343 3.0178 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220421844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:19 Heat of formation + Delta-G solvation = -8.660417 kcal Electronic energy + Delta-G solvation = -19075.192282 eV Core-core repulsion = 16475.428574 eV Total energy + Delta-G solvation = -2599.763707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85448 -37.96826 -35.57397 -34.11914 -33.26463 -30.42595 -29.54874 -26.75914 -26.32350 -24.83054 -24.17161 -22.35983 -20.89777 -20.63245 -18.68447 -16.90543 -16.83609 -16.62153 -16.08146 -15.69009 -15.51086 -15.26745 -14.72827 -14.28283 -13.98091 -13.80604 -13.65764 -13.42178 -12.98881 -12.76293 -12.68450 -12.61229 -12.44016 -12.18722 -12.04163 -11.97378 -11.86454 -11.67257 -11.54018 -11.35450 -11.15312 -10.55412 -10.54236 -9.00832 -8.84793 -8.61664 -6.33207 1.50880 1.57857 1.75900 2.52852 3.04501 3.08426 3.52704 3.93021 4.02446 4.05739 4.17638 4.27584 4.40073 4.47705 4.53602 4.59854 4.63265 4.68133 4.73868 4.78531 4.81671 4.90038 4.93110 4.96148 5.00634 5.11723 5.15999 5.20721 5.24177 5.30520 5.37464 5.41361 5.44179 5.48492 5.80248 6.16993 6.41070 6.45657 6.56700 6.68731 6.91310 7.44148 8.72868 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.009081 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.381989 B = 3082.722909 C = 4058.716760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.058 3.942 4 N -0.561 5.561 5 C 0.108 3.892 6 C 0.205 3.795 7 H -0.009 1.009 8 C -0.596 4.596 9 H 0.041 0.959 10 C -0.017 4.017 11 N -0.928 5.928 12 Si 1.109 2.891 13 H -0.275 1.275 14 H -0.271 1.271 15 H -0.285 1.285 16 N -0.561 5.561 17 C 0.068 3.932 18 C 0.058 3.942 19 C -0.104 4.104 20 C 0.098 3.902 21 H 0.035 0.965 22 C -0.141 4.141 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.024 0.976 30 H -0.007 1.007 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.001 0.999 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 7.499 2.666 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.069 4.069 4 N -0.285 5.285 5 C -0.023 4.023 6 C 0.098 3.902 7 H 0.009 0.991 8 C -0.635 4.635 9 H 0.060 0.940 10 C -0.217 4.217 11 N -0.565 5.565 12 Si 0.932 3.068 13 H -0.201 1.201 14 H -0.196 1.196 15 H -0.211 1.211 16 N -0.286 5.286 17 C -0.080 4.080 18 C -0.070 4.070 19 C -0.142 4.142 20 C -0.009 4.009 21 H 0.053 0.947 22 C -0.198 4.198 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.020 0.980 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.486 6.203 2.587 11.626 hybrid contribution -0.163 1.015 -0.124 1.035 sum -9.650 7.218 2.463 12.300 Atomic orbital electron populations 1.21662 0.93425 1.02256 1.02358 1.21609 0.97072 0.96410 1.01305 1.22303 0.86275 0.97242 1.01055 1.59348 1.07890 1.21141 1.40143 1.20745 0.95990 0.96586 0.88932 1.19084 0.90688 0.86074 0.94320 0.99106 1.22138 1.18705 1.19011 1.03682 0.94035 1.27073 0.92846 1.02514 0.99226 1.70900 1.41276 1.30799 1.13558 0.83029 0.76301 0.73539 0.73944 1.20076 1.19608 1.21082 1.61322 1.26992 1.22050 1.18276 1.21811 0.91221 0.97422 0.97561 1.22403 0.96002 0.97620 0.90938 1.21429 0.93825 1.01889 0.97103 1.21211 0.94311 0.87489 0.97914 0.94676 1.22026 0.98963 0.99935 0.98914 0.92535 0.92100 0.91358 0.93919 0.92500 0.88313 0.95822 0.98923 0.92700 0.93425 0.93120 0.93328 0.97210 0.98016 0.90795 0.94010 0.88736 0.90388 0.91426 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.13 -3.69 5.73 30.59 0.18 -3.52 16 3 C 0.06 1.73 4.11 86.30 0.35 2.09 16 4 N -0.56 -21.14 4.08 -887.16 -3.62 -24.75 16 5 C 0.11 4.91 4.30 87.96 0.38 5.29 16 6 C 0.21 10.63 1.76 45.01 0.08 10.71 16 7 H -0.01 -0.52 5.38 -2.39 -0.01 -0.53 16 8 C -0.60 -33.41 6.00 25.60 0.15 -33.26 16 9 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 10 C -0.02 -0.96 4.49 84.66 0.38 -0.58 16 11 N -0.93 -56.26 12.69 21.45 0.27 -55.99 16 12 Si 1.11 50.44 29.91 68.60 2.05 52.49 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 16 N -0.56 -26.44 4.19 -900.18 -3.77 -30.22 16 17 C 0.07 3.26 8.40 127.69 1.07 4.33 16 18 C 0.06 2.35 5.43 86.31 0.47 2.82 16 19 C -0.10 -3.68 4.92 30.11 0.15 -3.53 16 20 C 0.10 3.25 2.43 44.01 0.11 3.36 16 21 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 22 C -0.14 -3.32 7.75 71.98 0.56 -2.76 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.44 6.26 -2.39 -0.01 1.43 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.10 2.47 5.66 -2.39 -0.01 2.45 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H -0.01 -0.34 8.07 -2.39 -0.02 -0.36 16 31 H 0.05 2.60 5.59 -2.39 -0.01 2.59 16 32 H 0.25 15.91 6.26 -92.71 -0.58 15.33 16 33 H 0.05 2.52 7.06 -2.39 -0.02 2.50 16 34 H 0.05 2.00 8.05 -2.38 -0.02 1.98 16 35 H 0.01 0.51 5.65 -2.39 -0.01 0.49 16 36 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.04 1.71 7.23 -2.39 -0.02 1.69 16 39 H 0.09 2.63 7.70 -2.39 -0.02 2.61 16 40 H 0.08 1.52 8.09 -2.38 -0.02 1.50 16 41 H 0.07 1.43 6.46 -2.38 -0.02 1.41 16 42 H 0.06 1.49 8.02 -2.39 -0.02 1.47 16 Total: -1.00 -63.85 305.18 0.67 -63.18 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.15 Total: 12.61 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.59 Total: -17.32 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -7.12 Total: -110.96 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -63.85 0.67 -63.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220421844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.518 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds