Wall clock time and date at job start Mon Mar 30 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 N 1.46901 * 109.47300 * 175.81447 * 3 2 1 5 5 C 1.40086 * 110.99966 * 293.65257 * 4 3 2 6 6 H 1.09003 * 109.06856 * 67.69166 * 5 4 3 7 7 C 1.53000 * 109.07190 * 308.67037 * 5 4 3 8 8 C 1.54507 * 111.50998 * 188.14754 * 5 4 3 9 9 C 1.50741 * 108.94566 * 283.99196 * 8 5 4 10 10 N 1.48068 * 112.94226 * 92.65048 * 9 8 5 11 11 C 1.46896 * 111.00200 * 192.22185 * 10 9 8 12 12 C 1.47749 * 113.78317 * 318.28541 * 10 9 8 13 13 C 1.47694 * 110.99742 * 62.29393 * 4 3 2 14 14 H 1.09002 * 109.73429 * 271.64046 * 13 4 3 15 15 C 1.50692 * 109.73911 * 32.33985 * 13 4 3 16 16 H 1.08000 * 120.00437 * 5.62012 * 15 13 4 17 17 C 1.37881 * 119.99834 * 185.61109 * 15 13 4 18 18 N 1.31517 * 120.00144 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99916 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46815 * 60.00422 * 19 17 15 21 21 H 1.48495 * 109.47248 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47454 * 300.00578 * 19 17 15 23 23 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46924 * 300.00566 * 1 2 3 25 25 H 1.09001 * 109.46618 * 59.99925 * 1 2 3 26 26 H 1.09003 * 109.46943 * 239.99522 * 2 1 3 27 27 H 1.09001 * 109.46618 * 120.00075 * 2 1 3 28 28 H 1.09004 * 109.47296 * 295.81248 * 3 2 1 29 29 H 1.08998 * 109.47677 * 55.80946 * 3 2 1 30 30 H 1.09005 * 109.46836 * 67.46915 * 7 5 4 31 31 H 1.09000 * 109.46955 * 187.46490 * 7 5 4 32 32 H 1.08997 * 109.47013 * 307.47509 * 7 5 4 33 33 H 1.09006 * 109.56302 * 43.82949 * 8 5 4 34 34 H 1.08999 * 109.55748 * 164.04311 * 8 5 4 35 35 H 1.08998 * 108.79346 * 213.54297 * 9 8 5 36 36 H 1.09006 * 108.79066 * 331.86710 * 9 8 5 37 37 H 1.09004 * 109.47476 * 63.95435 * 11 10 9 38 38 H 1.09005 * 109.47033 * 183.95016 * 11 10 9 39 39 H 1.08997 * 109.47091 * 303.95032 * 11 10 9 40 40 H 1.09002 * 108.99047 * 79.50394 * 12 10 9 41 41 H 1.09007 * 108.99169 * 198.32618 * 12 10 9 42 42 H 0.96995 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5056 1.4436 0.1011 5 6 3.9236 0.9487 1.3432 6 1 3.6823 -0.1126 1.4031 7 6 3.1804 1.6935 2.4539 8 6 5.4447 1.1313 1.5430 9 6 6.1736 0.0955 0.7257 10 7 6.5435 0.5805 -0.6235 11 6 6.9837 -0.5292 -1.4795 12 6 5.4840 1.3706 -1.2839 13 6 4.1170 0.7735 -1.0644 14 1 4.2091 -0.2948 -0.8683 15 6 3.2624 0.9958 -2.2855 16 1 2.4045 1.6496 -2.2325 17 6 3.5759 0.3645 -3.4706 18 7 4.6205 -0.4319 -3.5351 19 14 2.5161 0.6395 -4.9841 20 1 2.5188 2.0825 -5.3346 21 1 3.0611 -0.1472 -6.1195 22 1 1.1258 0.2014 -4.7011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7393 1.9342 -0.9251 29 1 1.6168 1.9776 0.8500 30 1 2.1223 1.4338 2.4206 31 1 3.5939 1.4094 3.4216 32 1 3.2954 2.7679 2.3108 33 1 5.7389 2.1283 1.2148 34 1 5.6918 1.0066 2.5973 35 1 7.0809 -0.1950 1.2552 36 1 5.5344 -0.7810 0.6189 37 1 6.1541 -1.2189 -1.6356 38 1 7.3157 -0.1369 -2.4409 39 1 7.8078 -1.0551 -0.9975 40 1 5.4966 2.3847 -0.8844 41 1 5.6853 1.4090 -2.3546 42 1 4.8409 -0.8763 -4.3687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220422797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:29 Heat of formation + Delta-G solvation = 2.137105 kcal Electronic energy + Delta-G solvation = -19527.180343 eV Core-core repulsion = 16927.884852 eV Total energy + Delta-G solvation = -2599.295492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04059 -37.45574 -35.53098 -34.10159 -32.66198 -30.49884 -29.02555 -27.41776 -26.46291 -24.60928 -23.69720 -22.95466 -20.74953 -20.01034 -18.25434 -17.19683 -17.03088 -16.22864 -15.99144 -15.76274 -15.30996 -15.10903 -14.28626 -14.11682 -13.84576 -13.61809 -13.25580 -13.14525 -13.07023 -12.78302 -12.63997 -12.58198 -12.47982 -12.33010 -12.09139 -12.00328 -11.90651 -11.76606 -11.56976 -11.20733 -10.88454 -10.72158 -10.51204 -9.04641 -8.59701 -8.05025 -6.15225 1.41713 1.42881 1.48841 2.43116 3.20340 3.29060 3.47713 3.95037 4.10218 4.19062 4.28476 4.38238 4.55023 4.56310 4.61667 4.70628 4.73851 4.87097 4.90001 4.92052 4.94822 5.03225 5.06888 5.08500 5.12266 5.21940 5.25620 5.29003 5.31628 5.39153 5.50596 5.60855 5.65811 5.81600 5.86560 6.04598 6.38325 6.50893 6.57569 7.01152 7.11828 7.51574 8.97428 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.012797 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.671527 B = 2187.408912 C = 3378.168162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.070 3.930 4 N -0.555 5.555 5 C 0.094 3.906 6 H -0.003 1.003 7 C -0.137 4.137 8 C -0.106 4.106 9 C 0.063 3.937 10 N -0.559 5.559 11 C 0.060 3.940 12 C 0.093 3.907 13 C 0.223 3.777 14 H -0.031 1.031 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.019 3.981 18 N -0.905 5.905 19 Si 0.946 3.054 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.276 1.276 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.000 1.000 37 H 0.012 0.988 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 1.730 9.519 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.187 4.187 3 C -0.058 4.058 4 N -0.278 5.278 5 C -0.017 4.017 6 H 0.014 0.986 7 C -0.194 4.194 8 C -0.144 4.144 9 C -0.065 4.065 10 N -0.283 5.283 11 C -0.089 4.089 12 C -0.035 4.035 13 C 0.116 3.884 14 H -0.014 1.014 15 C -0.560 4.560 16 H 0.086 0.914 17 C -0.181 4.181 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.201 1.201 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.018 0.982 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.552 2.372 9.460 9.875 hybrid contribution -1.227 -1.722 -1.514 2.600 sum -2.779 0.650 7.946 8.443 Atomic orbital electron populations 1.21603 0.94419 1.01393 1.01901 1.21974 0.97117 0.99510 1.00068 1.22154 0.87085 0.94941 1.01582 1.59382 1.07604 1.58627 1.02215 1.20601 0.95506 0.95041 0.90526 0.98579 1.21955 0.99723 1.00744 0.96992 1.21589 0.93377 0.99517 0.99945 1.21837 0.98636 0.96167 0.89842 1.62279 1.39065 1.24028 1.02957 1.21952 0.98151 0.92816 0.95973 1.21769 0.89466 0.95259 0.96988 1.19009 0.92502 0.89671 0.87263 1.01403 1.21575 1.12154 1.27468 0.94808 0.91351 1.25579 0.96268 0.95185 1.01036 1.70083 1.27236 1.30260 1.26829 0.85793 0.79217 0.78102 0.79576 1.19843 1.21626 1.20109 0.93030 0.91274 0.93275 0.94294 0.93818 0.91651 0.90220 0.92467 0.90821 0.91875 0.91261 0.88420 0.90272 0.98179 0.96904 0.93443 0.91969 0.93329 0.93315 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.91 71.98 0.71 -3.35 16 2 C -0.15 -5.57 5.34 30.59 0.16 -5.40 16 3 C 0.07 2.63 4.31 86.30 0.37 3.01 16 4 N -0.55 -22.91 3.96 -865.17 -3.43 -26.33 16 5 C 0.09 3.30 1.69 46.66 0.08 3.38 16 6 H 0.00 -0.13 6.06 -2.39 -0.01 -0.15 16 7 C -0.14 -3.69 8.29 71.98 0.60 -3.09 16 8 C -0.11 -3.51 5.02 30.37 0.15 -3.35 16 9 C 0.06 2.35 5.01 85.34 0.43 2.78 16 10 N -0.56 -24.20 4.99 -925.80 -4.62 -28.82 16 11 C 0.06 2.60 8.93 127.69 1.14 3.74 16 12 C 0.09 4.52 4.51 85.42 0.38 4.90 16 13 C 0.22 10.92 0.88 43.29 0.04 10.96 16 14 H -0.03 -1.79 6.21 -2.39 -0.01 -1.81 16 15 C -0.52 -27.37 6.46 25.60 0.17 -27.20 16 16 H 0.07 3.55 5.19 -2.91 -0.02 3.54 16 17 C 0.02 1.03 5.06 84.66 0.43 1.46 16 18 N -0.91 -50.22 11.08 21.45 0.24 -49.98 16 19 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.81 6.40 -2.39 -0.02 1.80 16 27 H 0.04 1.61 6.52 -2.39 -0.02 1.60 16 28 H 0.07 2.74 5.44 -2.38 -0.01 2.73 16 29 H 0.08 2.56 5.76 -2.39 -0.01 2.54 16 30 H 0.06 1.49 6.46 -2.38 -0.02 1.47 16 31 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 2.45 7.19 -2.38 -0.02 2.44 16 34 H 0.10 2.51 7.91 -2.39 -0.02 2.49 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.00 0.00 6.40 -2.38 -0.02 -0.02 16 37 H 0.01 0.62 7.04 -2.38 -0.02 0.60 16 38 H 0.05 2.15 7.97 -2.38 -0.02 2.13 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 2.34 7.20 -2.39 -0.02 2.32 16 41 H 0.05 2.67 6.15 -2.38 -0.01 2.65 16 42 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -57.50 299.31 -0.15 -57.65 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.98 Total: 14.50 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 4.66 Total: -12.16 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -7.81 Total: -105.13 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -57.50 -0.15 -57.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220422797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.785 kcal (2) G-P(sol) polarization free energy of solvation -57.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds