Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 N 1.46902 * 109.47158 * 185.76259 * 3 2 1 5 5 C 1.48062 * 111.00119 * 295.96673 * 4 3 2 6 6 H 1.09006 * 108.78919 * 205.13104 * 5 4 3 7 7 C 1.52996 * 108.78877 * 323.45762 * 5 4 3 8 8 C 1.50743 * 112.85269 * 84.29632 * 5 4 3 9 9 C 1.54506 * 108.94142 * 92.71209 * 8 5 4 10 10 N 1.40083 * 111.51311 * 283.97757 * 9 8 5 11 11 C 1.46897 * 111.00261 * 188.14679 * 10 9 8 12 12 C 1.47683 * 114.56662 * 61.45002 * 10 9 8 13 13 C 1.47680 * 111.05797 * 63.66794 * 4 3 2 14 14 H 1.09008 * 108.83028 * 313.46173 * 13 4 3 15 15 C 1.50700 * 109.03774 * 72.21682 * 13 4 3 16 16 H 1.07994 * 119.99845 * 2.50589 * 15 13 4 17 17 C 1.37879 * 120.00252 * 182.50098 * 15 13 4 18 18 N 1.31515 * 119.99789 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00215 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46983 * 59.99976 * 19 17 15 21 21 H 1.48500 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46893 * 300.00045 * 19 17 15 23 23 H 1.09001 * 109.47352 * 300.00033 * 1 2 3 24 24 H 1.09008 * 109.47092 * 60.00255 * 1 2 3 25 25 H 1.09004 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47352 * 239.99967 * 2 1 3 27 27 H 1.09008 * 109.47092 * 119.99745 * 2 1 3 28 28 H 1.08999 * 109.47477 * 65.76451 * 3 2 1 29 29 H 1.09003 * 109.47211 * 305.76438 * 3 2 1 30 30 H 1.09005 * 109.47259 * 181.64885 * 7 5 4 31 31 H 1.08996 * 109.47285 * 301.65392 * 7 5 4 32 32 H 1.09007 * 109.47301 * 61.65558 * 7 5 4 33 33 H 1.09004 * 109.55575 * 212.55009 * 8 5 4 34 34 H 1.09001 * 109.55987 * 332.87439 * 8 5 4 35 35 H 1.09000 * 109.07709 * 44.49766 * 9 8 5 36 36 H 1.09004 * 109.07771 * 163.45099 * 9 8 5 37 37 H 1.09004 * 109.47529 * 63.94884 * 11 10 9 38 38 H 1.09002 * 109.47604 * 183.95136 * 11 10 9 39 39 H 1.09006 * 109.47130 * 303.94957 * 11 10 9 40 40 H 1.08997 * 109.73803 * 38.34795 * 12 10 9 41 41 H 1.08998 * 109.73976 * 159.04823 * 12 10 9 42 42 H 0.97001 * 120.00088 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5024 1.4448 -0.1391 5 6 4.1473 0.7992 1.0269 6 1 5.1591 1.1914 1.1303 7 6 3.3526 1.1498 2.2864 8 6 4.2189 -0.7012 0.8999 9 6 5.5738 -1.0867 0.2652 10 7 5.5847 -0.8379 -1.1133 11 6 6.7977 -1.3831 -1.7371 12 6 5.3903 0.5786 -1.4831 13 6 3.9127 0.8760 -1.4387 14 1 3.3597 -0.0478 -1.6088 15 6 3.5767 1.8566 -2.5325 16 1 3.1466 2.8157 -2.2845 17 6 3.8184 1.5295 -3.8500 18 7 4.3427 0.3617 -4.1519 19 14 3.4026 2.7453 -5.2058 20 1 4.1726 3.9983 -5.0002 21 1 3.7552 2.1574 -6.5231 22 1 1.9489 3.0463 -5.1718 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.7634 1.9257 0.9371 29 1 1.5948 1.9853 -0.8339 30 1 3.8349 0.7038 3.1563 31 1 3.3189 2.2328 2.4050 32 1 2.3378 0.7625 2.1953 33 1 4.1361 -1.1553 1.8874 34 1 3.4055 -1.0529 0.2653 35 1 6.3665 -0.5068 0.7380 36 1 5.7590 -2.1470 0.4372 37 1 6.8013 -2.4686 -1.6372 38 1 6.8148 -1.1155 -2.7936 39 1 7.6774 -0.9699 -1.2435 40 1 5.9160 1.2194 -0.7752 41 1 5.7704 0.7518 -2.4898 42 1 4.5131 0.1317 -5.0787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220422859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = 24.070907 kcal Electronic energy + Delta-G solvation = -19459.217803 eV Core-core repulsion = 16860.873433 eV Total energy + Delta-G solvation = -2598.344371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42909 -36.16022 -33.57433 -32.54644 -30.93916 -28.85140 -27.61669 -25.29838 -24.90354 -23.81162 -21.68569 -20.85632 -19.73377 -18.22058 -16.15466 -15.80455 -15.04307 -14.45364 -14.37301 -14.10452 -13.98284 -13.37848 -12.90829 -12.55548 -12.33736 -12.30783 -11.79067 -11.63496 -11.31299 -11.22290 -11.09382 -10.97061 -10.88808 -10.68796 -10.59577 -10.38302 -10.04778 -10.01287 -9.81567 -9.51399 -9.40249 -8.96183 -8.31123 -7.20108 -6.90461 -5.89705 -3.96017 3.36589 3.40995 3.44252 4.46301 4.91560 5.01756 5.35961 5.42711 5.51488 5.59443 5.64964 5.72697 5.83162 5.91429 5.99828 6.07987 6.11400 6.18148 6.21036 6.29488 6.34326 6.40830 6.45122 6.53555 6.55994 6.59402 6.63107 6.75884 6.82154 6.96739 7.05852 7.10872 7.44160 7.69386 7.94118 8.16148 8.28414 8.33369 8.51482 8.76496 9.14408 9.67410 11.13339 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.011339 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.369568 B = 2468.732588 C = 3392.851797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.169 4.169 3 C 0.066 3.934 4 N -0.538 5.538 5 C 0.084 3.916 6 H 0.063 0.937 7 C -0.152 4.152 8 C -0.155 4.155 9 C 0.082 3.918 10 N -0.553 5.553 11 C 0.043 3.957 12 C 0.086 3.914 13 C 0.219 3.781 14 H 0.029 0.971 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.881 5.881 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.279 1.279 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.003 0.997 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.005 0.995 40 H 0.008 0.992 41 H 0.102 0.898 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -2.254 8.671 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C -0.062 4.062 4 N -0.262 5.262 5 C -0.025 4.025 6 H 0.081 0.919 7 C -0.210 4.210 8 C -0.194 4.194 9 C -0.048 4.048 10 N -0.277 5.277 11 C -0.106 4.106 12 C -0.040 4.040 13 C 0.113 3.887 14 H 0.046 0.954 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.520 5.520 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.205 1.205 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.120 0.880 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.943 -2.112 8.332 8.647 hybrid contribution 0.299 0.096 -0.455 0.553 sum -0.644 -2.016 7.878 8.157 Atomic orbital electron populations 1.21696 0.96893 1.00538 1.01126 1.22494 0.95221 1.00703 1.02340 1.22079 0.88939 0.94300 1.00906 1.62387 1.05577 1.55887 1.02388 1.21389 0.98282 0.91738 0.91094 0.91932 1.22189 1.00548 1.01482 0.96762 1.22480 0.99002 0.97945 1.00013 1.20917 0.95780 0.98830 0.89279 1.58959 1.37395 1.21354 1.09967 1.22188 0.89619 0.98441 1.00304 1.22120 0.98998 0.82216 1.00699 1.19076 0.91566 0.94718 0.83355 0.95354 1.21130 1.40910 1.02047 0.89935 0.92246 1.24935 0.95691 0.95269 0.98437 1.70021 1.43560 1.20227 1.18142 0.86695 0.78802 0.81471 0.81189 1.20451 1.21554 1.20472 0.93657 0.92778 0.93767 0.90528 0.92262 0.92512 0.90650 0.93527 0.92539 0.92135 0.92492 0.89341 0.97895 0.92959 0.93302 0.90854 0.97610 0.97360 0.87982 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.15 0.37 -1.81 16 2 C -0.17 -2.99 3.93 -26.73 -0.11 -3.10 16 3 C 0.07 1.27 4.65 -3.82 -0.02 1.25 16 4 N -0.54 -11.45 4.58 -221.22 -1.01 -12.46 16 5 C 0.08 1.53 2.24 -68.20 -0.15 1.38 16 6 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 7 C -0.15 -2.29 7.65 37.16 0.28 -2.01 16 8 C -0.16 -2.74 4.21 -27.07 -0.11 -2.85 16 9 C 0.08 1.52 4.94 -6.56 -0.03 1.49 16 10 N -0.55 -11.79 4.23 -248.02 -1.05 -12.84 16 11 C 0.04 0.81 9.52 60.06 0.57 1.38 16 12 C 0.09 2.05 4.46 -4.51 -0.02 2.03 16 13 C 0.22 5.34 1.20 -69.55 -0.08 5.26 16 14 H 0.03 0.78 4.96 -51.92 -0.26 0.52 16 15 C -0.50 -13.48 7.89 -34.44 -0.27 -13.75 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 17 C 0.06 1.57 5.02 -17.82 -0.09 1.48 16 18 N -0.88 -24.38 11.61 55.43 0.64 -23.74 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.62 5.60 -51.93 -0.29 1.33 16 27 H 0.06 0.99 4.67 -51.92 -0.24 0.75 16 28 H 0.06 0.97 5.98 -51.93 -0.31 0.66 16 29 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 30 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 31 H 0.06 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.06 0.88 5.01 -51.93 -0.26 0.63 16 33 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 34 H 0.09 1.73 4.12 -51.93 -0.21 1.51 16 35 H 0.00 0.06 7.59 -51.93 -0.39 -0.33 16 36 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 37 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.07 1.50 7.73 -51.93 -0.40 1.10 16 39 H 0.01 0.10 8.13 -51.93 -0.42 -0.32 16 40 H 0.01 0.20 6.77 -51.93 -0.35 -0.15 16 41 H 0.10 2.71 5.39 -51.93 -0.28 2.43 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -27.17 296.84 -8.64 -35.81 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.01 Total: 1.87 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 0.34 Total: -9.26 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -1.42 Total: -49.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.17 -8.64 -35.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220422859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.885 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds